RNA id: XM_036952039.1


Basic Information

Item Value
RNA id XM_036952039.1
length 5555
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC110495681
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16516667 ~ 16584000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTGAGTTGAGGCCTAATTAGTTTGAAGCGGCATGTGACTTGGCCATTGTGCTGGAGTTCGAGAACGCAGCAGAACGCATGTGAAGTTATACAGTGGAAATCCACGATATAGCAGGTGGTGATGAGGACGGGAGAGAGTGATGAGAATATGAAGGAAAAagaggagaagatgggagagagggatgagatggaggTGCGTTTGCAGTCCAGCGGACACGGACACggaggaggaggatgtgtccACATCTCTCTGGAGGAAGTGAAGAGCTTCTACCGGTTCTCACAGAGCTGTCAGCGCCTgcataATGACATCATGCAGCAGGAGAGTGATCGTCTGTTTGCTGCAGACATCGATCCTGACCTCAGGAAACGGTTTGCTTTCCTCTCAGGGGGCCGAGCTGAGAACGGCAGTCCCATCATCGTGTTCCCAGAATTCCCTGCTTTTGGCGAGCTCCAGGAGGAAGAGTTCCACAACGTGCTGACCTACCTGACCAGTGTGCCCAGTGTGACAGCGTCTGGAGTGGGCTTCATCCTGGTCATCGACCGCCGCCAGGACAGATGGACCGCCGTCAAGGGGACCCTGCTACGCATTGCAGGCTCATTCCCAGTACATTTACAGCTGGTTCTGGTCTTGCGGCCCTCCACCTTATTCCAGCGGACGCTCTCCGACATCTTCTTTAAGTTCAACAGGGATGAGTTCAAGATGAAGGTGCCgGTGGTGATGCTGAGCTCTGTGACTGAGCTCCATGCCTACATCGACCGGACTCAGCTGCCCCAGGAGCTGGGAGGAACCCAGGATTACTGCCATGATACCTGGATCTCACACCGCACCGTGAGtaccctactaccatacccttcTCACCAGACCCCTGACAGACTACATAGGGCCCAATCCCAACATGATACCTGGATCTCACACCGCACCGCTATCGAGGCCTTTGCTCTGATGGTGAAGACCACGGCACAGACCCTGCAGTCGTTTGGGACGGAGCTAGCCGAGACCGAGCTACCCAACGACGCCCAGGCCACGTCCAACCTGCTGGCCACACACTCCGAGAAGAAGGGACAGATGAAGGAGGACCTGTGTGTGGCCCTGGGCCAGGGGGGCCGGCTCCTGGAGAGCATCAACGAGCCCCTGCAGAGAGAACCCGACTATACAATGAACCAGGACGAGCTGGAAAACCTGGCCACCGTGCAGAGACTGCTGGGCCAGCTGGATGAGACAGAGACTGCGTTTGATGATTTCTGGGAGAGACACCAGACCAAGCTGGAACAGTGCCTGCAGCTCCGCCATTTTGAATACTACTTCCGTGAGGTGCGTGCCCAGCTGGATGTGGTGTCAGAGCGGGTAGAGGCGTTCTCGGAGGTTGGCATCAGTCCCGCCCATGCAGAACACATCCTACGAGAACTCAACAGCCAGGAGGAGAAAGCCTGcgatgtGTTGGACTGGGCTCTGTCCCTGGCCGCTGAGGGGGATGGGCTGATTGAGAGTGCTCACTACGCTGAGGACTCCATCCTGCCTAAGTGCAGTGAGCTGAGGGCCGTGTGTGATGAGGTCACCTCCTTCCTCAAGTCCAAGAAGGTCCTCCTCCTGAGGGCCATGGAGCTGCACCACTGTCTGGAGAAGgcATCGAGGTGGTGTGAGGAAGGGATCTACCTCCTTGCCTCCCAGCCGGTAGATAGATGTCAGTCTCAGGACGGGGCGGAGGCCGCGCTGCAGGAGCTGGAGAAGTACCTGGACACGGCCGCCCAACACCAGATCACCGACCTCAAGGCCATCTGGAGGGACTATGACTCCATCCTCAACCCAGAGCTCAGGGAGCAGGTAGAGAAGGTGTTTCAAAAGCAGGTGTCCATGCAGGAGATGTTTGAGAAGAGGAGGGTCAGTCTGAAGAAGCTGGCAGCCAAACAGACACGGCCCGTCCAACCAGTGGCTCCCAGGCCTGAAGCCATCATCAAGTTCCCCATGTCCCCTCCTGCTCACAGGAGTCAAGAGACGAGGAATGCAGAGGACAACATCTTGAACGTAGAAAACTGCAGAATAGTGGAGGTCCAGGTGCAGAACGGCGGTAGCAGACACGGctctctgtctgaggaggaggagaacctgGCTGTGCTCCGACGACATGTAATGAACGAGCTGTTGGAGACTGAGAGGGCGTATGTAGAGGAGCTACTCTGTGTACTGCAGGGTTATGCTGCAGAGATGGACAACCCAGCCATGGCTCACCTCCTCCCCAGTGCGCTGCTCAACAGGAAGGATGTCCTGTTTGGAAACATGCCAGAGATCTACCAGTTCCACAAGAGGACATTCCTCAGGGAGCTGGAGACCTACACAGACGTCCCTGAGCTGGTGGGACGCTGTTTCCTGGAGAGGATGGGCGACCTGCAGATCTATGAGAAGTACTGTCAGAACAAACCTCGCTCCGAGAGCTTGTGGAGACAGTGCTCCGACTGCGCCTTCTTCCAGGAGTGCCAGAGAAAGTTGGAACACAAACTGGGGTTGGACTCGTACCTCCTCAAGCCAGTCCAGAGGATAACCAAATACCAGCTGATACTGAAGGAGTTACTGAAGTACAGTAAGGGCTGTGAGGGTTCAGAGGACCTGCAGGAGGCGCTGTCCTCCATCCTGGGGATCCTGAAGGCCGTCAACGACTCCATGCACCTCATCGCCATCACAGGATATGAGGGGAGCCTGACGGAGTTGGGCAGGCTGCTGATGCAGGGGTCGTTCAGCGTGTGGACGGAACACAAGAAAGGTCACGCTAAGGTCAAGGACCTGGCCCGCTTCAAGCCCATGCAGAGACACCTGTTCCTGCATGAAAAAGCCTTGCTCTTCTGTAAGAGACGGGAGGAGAATGGGGAGGGTTACGAGAAAGCCCCGTCCTACAGCTTTAAACACTCCCTCAATATGAGTGCGGTGGGCATCACGGAGAGCGCCAAGGGTGACAACAAGAAGTTTGAGATCTGGTGTAATTCCAGAGAGGAGGTGTTTATCGTCCAGGCTGCGACACCTGAGATCAAAACATCTTGGTTGAATGAGATCAGGAAGGTTCTGACTGGCCAGCTGAAGGCCTGCAGGGAATCTAGTCAAAAGAAGGTGTCAGACACAATGTCTCCCAGTCCAACCAGCAACAGCCCACCTATCTGTCTCAGTCCATTTAGGAACTGTCAGAAGAGCGTGaagaagggagaagagaagaagacagacgctgtcatctctgaccccaactccccctcctccccaaaaCACAAAGGTTGGAACAAGGCCTCTTTCTCAATGGACGTGCCAGAAGTGCATGATGGGTACTCCAGCGCCGAGGACCCCATGAACTCTGACCTTGAGGATGAGGGAGGCAGGAAGCTGGCTGTCGGCGACAGGTTCACAGTGGTGGCGGACTATGAGAAGGAGAAAGGAGGGCCTCAGGACCTGTCAGTGAAGAGTGGAGACATGGTGCAGCTCATTAAAGAGGGAGGTGACGGACAGTGGTTTGTTAGAAACTTGGGGAGCAACAAAGATGGCTGGGTAGCAGCAGCCAACCTTCTCACCCTCATCACAGAGTCCAAGTCCTCGCAGTCCCTCTGCAGCTCAGaggGCAGTGTAACTGGCAACCTCAACACCTCCTCCAGCTGCAGTGAAACCTACACAAGTTTCTCTGACATCAAGCCCTAAAGTCCCGCCCCCTCTAAGCCCTGAGACACAGCTACAGCGCCACCCAGTGGTTGGCTGTTCAAACGACACGTGCACTTTTCCCCTCTActactgttcaaatcaaatcaaattgtatttatcacatgtgccgaatacaactggtgtagccttttacagtgaaattcttgcACACGTTAGTTTTCATTACAGTCCATAGATACTTCACTCTCATACTGAAGTGGAGGCTGCCTGGAATGTAGCAGAAAGCAGTCTAATAGCTGCTTATCTGTCAATGTGAAGGGAAGGTAATGAAGGACTGCTTTCCTCTGGACATACTCTACTCTCAGGGATAAGAGGTAGTGTCCTAGTCTTTTACTGTGATTGAGGGCTAGCACACATTGAGAACAGGAAGTTCAGGCCTCTcccctacctgtttgacagagaTGAACAAGGAAGGACACACCCactccattcacacacacaggcaggcttTGTTAGCCTAGCGCGGTACCGCTCCTCCCACTCCAACAAGGTGACAGTGATATGGAGCCAGGAGCTCCTCTACTGAACTCAACACTtcaacagacaaacaaacagacgCCTCAGTCTCTCTTCTGAGTACTCTGGTAACCAGTTGTGTCATAATGTTTCTCTGTGTCAGGCAGTCAACCTCCTCAGTAtgtcctcagtcctctcctgagTGACTTTAAAAATAAGATGAGGATGGATTTATATTTCATATGTTTCTGCTGGATCCCCCAAGACAAACTAAACTGTAAAAGTGTTGAGACAATCACATTCTAGCAAGAATGCAAATTAGAATGGAATTGTCATGAAATACTTTTTGAGTTTGGTCAACTGTGTATATCTATGGCTTTGTCCAGAGGCCCTCCAGTACATTTCcagtccctctccctccctgtttctCCTTCCTCCACCTGTGCTGTCTGGGCTATTAGTGAACTCTTGGCTTTGTTCCCAGTGATCTGAGAGAGCTGGGCTTTAAACTACCAGGTGTTCCTTTAGGCAGGGGCGATATTACAGGACGGTCAGATATCATAGATACTTCAACAATAACAGTGCTCAGGATGTTCTTCTGAATCATTTTCTCTTGGCTCAAAGTCCAATCCTATACACTACACAGAAATCCCCTGAAGATTGAGATTCCGGTAAAGAGATTCATGTCAGGTCGATTGATGTTGAAATAACTGTGTACTGTACCAGAGAGTATAAACTTAAAAGGAATTATTTGTATGCGTTAATCAATTTGTATAAGTTCATTTATTTGAGAAAGATGTGTACCGATATAATTATCCTATACCTCGTATTTTTCATTGAATATGTGTATGTTGTGTATGAAAACCATGGATATGTTTTCGTGGGCCTAAGTATATCAAAGATATTTTATTAATTGGTTGGCGGGGCATGTTTCCATGGTAATTTCTTAAAACTCCTGAGACGACATATATTAATAGAAATATCATTTTCCTCATTTGAGAATGCAGTCTGTACACTGAAAACCGAAGATGGAATATAACTATAACGTCGTGTGCTGAAAGTTCAACTCGGAATGATGGTTGTCTCAAATTTCAGCACGCACAATAAAAGGTTTTAAACTGTTCTGGTTATAACCGTTTTAGTTATAACTGTTTTTATAACTTATTGTTCTACTGTATATCTTTTTCGATTTGCACCCAGTGAGATTACAATGTTGTTACTGTGTGTCACATTGTTATGCAGCACATTGCCGCATTATTTTGTTCTTTATTTTCCTACGGTAACAAGTATTGATACAGATCTTATATAATTAATGATATGCATTCATATCTGTGTATATGTGTAAATATGTATCTCTGTGTATTATTAAAGCCGCTGAATAAAGACAAACATTCTTTGCTTTAA

Function

GO: NA

KEGG:

id description
K20685 MCF2, ARHGEF14_21_22; guanine nucleotide exchange factor MCF2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742296 lncRNA downstream 3073 16513315 ~ 16513594 (-) True G1521772
TU1742286 lncRNA downstream 30405 16484896 ~ 16486262 (-) True G1521763
TU1742279 lncRNA downstream 36882 16479143 ~ 16479785 (-) True G1521757
TU1742262 lncRNA downstream 67197 16449240 ~ 16449470 (-) True G1521740
TU1742260 lncRNA downstream 69092 16447372 ~ 16447575 (-) True G1521738
TU1742304 lncRNA upstream 154 16584154 ~ 16593522 (-) False LOC110495682
TU1742306 lncRNA upstream 154 16584154 ~ 16593522 (-) False LOC110495682
TU1742307 lncRNA upstream 154 16584154 ~ 16593522 (-) True LOC110495682
TU1742363 lncRNA upstream 27021 16611021 ~ 16611238 (-) True G1521827
TU1742398 lncRNA upstream 71121 16655121 ~ 16656216 (-) True G1521858
XM_021571047.2 mRNA downstream 658 16494961 ~ 16516009 (-) True LOC110495677
XM_021571048.2 mRNA downstream 40415 16473995 ~ 16476252 (-) True LOC110495679
XM_021571032.2 mRNA downstream 105158 16386046 ~ 16411509 (-) False LOC110495671
XM_036952041.1 mRNA upstream 1783 16585783 ~ 16610835 (-) False LOC110495682
XM_036952042.1 mRNA upstream 1783 16585783 ~ 16610837 (-) False LOC110495682
XM_021571062.2 mRNA upstream 148325 16732325 ~ 16735884 (-) True LOC110495684
XM_036952054.1 mRNA upstream 331423 16915423 ~ 16946519 (-) False LOC110495686
XM_036952053.1 mRNA upstream 331423 16915423 ~ 16946521 (-) False LOC110495686
TU1742232 other downstream 97749 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 431701 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 492285 16022606 ~ 16024382 (-) False LOC110495656
TU1742042 other downstream 492313 16022467 ~ 16024354 (-) False LOC110495656
TU1742516 other upstream 353652 16937652 ~ 16942594 (-) True LOC110495686
TU1742514 other upstream 425382 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 857659 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 1058418 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 1103930 17687930 ~ 17702753 (-) True LOC118941106

Expression Profile