RNA id: TU1742304


Basic Information

Item Value
RNA id TU1742304
length 2414
lncRNA type sense_over
GC content 0.45
exon number 4
gene id LOC110495682
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16584154 ~ 16610837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGTAGAAAAGGCCCAGGATCTAGACCACATCATCGCTGCCCACGAAAGATTCTTAGACTCTGTCATCTCCCGCTGCCTACTGGACACCAACAGCAGGTCCTTGTTGAACCAGCTGAGGGCGATCTTTGACCAGATCATAGAGTTCCAGAGTGCCCAGGACTCTCTGTACCGCTCTGCCCTGGAGGAACTCACCCTGCGGCTGCAGTACGAGGAGCGGAAGAAGCAGAGGGATTCTGAGggtGAGTGGGGCGTGACTGCTGAAAAGGAggcagaggagaacaggaggatcCAAGAGTTCCAGGAGACCATACCAAAAATGCGCTCTCAGCTACGGATACTAACACACTTCTACCAGGGCATAGTGCAGCAGTTCCTGGTGCTGATAATGACTAGTCCAGATGAGAGCCTGCGCTTCCTCAGCTTCAGACTGGACTTCAACGAGCACTACCGGGCAAGAGATCCCCGTCTGAGGGCCTCGCTGGGGACCACCAGGGGCCGACGGCCCTCCAACATCTGACCTGACGCACACCACCATGTCACAACATGGGGACAGAGAGCCACACAGAATCTGCCTTGATAGTATTTATATATGACATGAAGATGACATCAAATTAGGGCTAGATGGAATCTGTTGTGATGATATCACAATAGAACCAGACAGAACATTGACATCACAAAAGAGCCATAGAGCCAATAGAGCCAGGTGGAGATgatgccgcattcaaaacaactaggaactctgaaatctctgacttcagtgtgttcaaaacaactgggaactctgaaatctctgacttcagtgtgttcaaaacaactgggaactctgaaatctctgacttcagtgtgttcaaaacaactgggaactctgaaatctctgacttcagtgtgttcaaaacaactgggaactctgtaaaaaaaaaacaatctccAACTTGGAAAAcccgttttgaacggtcatccaactcggaattccaagtcgggaactcggggCCTCTTTCcagagctctgactttccgacctgatgacgtcatgatttgacctagtTTTTTTCtgaattcccagttgtcttgaacgcacaaTAAGAGGATGATGTAGTGGTGACTTCACAGATTCCATTTGGCCCTGCATTTTAACACCTCAAGACAAATAGGGCTAACTGGGATTCATTTCACTATGACATAAACAAACAGAACATTTTGAAACCCTGCCTCCTCCCCAATGTCATTGGCAAATtactcacacaaacaaacacacacgctcaATACACCATACACACATCCACGTTTCCCACTCTTTCACAGTCCCCTCTTGGGAGGTGTGGTTTTAGAAGCCTGTCATTTTAGTAGTCTGCCTCCAGCCTCCAGCTGTGTTCACCCTCACCTCTTTGAGGTGTCTGATAGGCTACCATCACCGTGTGAATTTCATATTGTACATTTGATAATGAACAGAATGTCTTGATTTGATTGGTTTGTTTTGATGTTCTGTGAATATTTTGTTTAGGTTTTCTTACTGACGTTTGTTTATTTTTCATACCAGTGTCTTAAAGTCTGCGGTGTGTTTTTTATAACTGTTAATAAACACTTATAGCTGTTTAACAACGGTATTATGGAACCAACACAGCAGGCTCCCACCCACCTCTCTAAAGAGATTCAAGAACAATGCCCACAGCCCCTAAGGCTAAAAGACGGACAGACGTTAGGATTTTATTGgtgttttgtattatttaacTGGGTTTCTCTTGATTCTCCTTGCAGACTATGGCCTCTGTTCTGCATGTCAAACTGTCATGTTGAACCAGCTCAATTCCTTAATTGTACAAGACAGATTTGTCAAACGTGTTGCACCCAACTTATGCCACTTTTCTCTCTGACCACTCAGACAACCCTGGGGAAATACTTTTGTCATACGACATTGTCATACGACATTAAACCTTGAAGAAGCTACAAGTGGAATGGTGACATAACTAGCCATTCAAAACCCCCCTATGATggagtatactgtagtattcggGTGTATCTCAATAGTCAGAGGTGGCTTCCTCATCTCCCTTCCCTTTTCACTGATCCGAAAGCGATATGGAAGATGCTTACcaggacttgctttcattcaccTGTCAGCAGagcagatgaaggaaaggaggcAATGAAGCTATTGgttgcgtcctaaatggcaccatacataatagggtgccattagagaTGCACCCAGAATTAGAGAGGCACCCTTTAGTGTTTTAACCTCTCCCAGCAGGCTCCCCTGTCTTTCTTTCCAATCACAAGTTCTCATCAGGGCGTGCCAAGAGAAGATGCTACTGCAAGACCTCTGTCTGTAAATCCTGTCCATTGTATAGCACAGATGTATAGAAATGACATGCCATGGACACAAACATCCTGTCATCTCTTTAATAATAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742345 lncRNA downstream 19358 16564298 ~ 16564796 (-) True G1521810
TU1742296 lncRNA downstream 70560 16513315 ~ 16513594 (-) True G1521772
TU1742286 lncRNA downstream 97892 16484896 ~ 16486262 (-) True G1521763
TU1742279 lncRNA downstream 104369 16479143 ~ 16479785 (-) True G1521757
TU1742262 lncRNA downstream 134684 16449240 ~ 16449470 (-) True G1521740
TU1742363 lncRNA upstream 17499 16611021 ~ 16611238 (-) True G1521827
TU1742398 lncRNA upstream 61599 16655121 ~ 16656216 (-) True G1521858
TU1742412 lncRNA upstream 87253 16680775 ~ 16683073 (-) True G1521871
TU1742418 lncRNA upstream 92052 16685574 ~ 16685809 (-) True G1521874
TU1742422 lncRNA upstream 100608 16694130 ~ 16694470 (-) True G1521878
XM_036952034.1 mRNA downstream 154 16516667 ~ 16584000 (-) False LOC110495681
XM_036952035.1 mRNA downstream 154 16516667 ~ 16584000 (-) False LOC110495681
XM_036952037.1 mRNA downstream 154 16516667 ~ 16584000 (-) False LOC110495681
XM_036952038.1 mRNA downstream 154 16516667 ~ 16584000 (-) False LOC110495681
XM_036952039.1 mRNA downstream 154 16516667 ~ 16584000 (-) True LOC110495681
XM_021571062.2 mRNA upstream 138803 16732325 ~ 16735884 (-) True LOC110495684
XM_036952054.1 mRNA upstream 321901 16915423 ~ 16946519 (-) False LOC110495686
XM_036952053.1 mRNA upstream 321901 16915423 ~ 16946521 (-) False LOC110495686
XM_036952050.1 mRNA upstream 354245 16947767 ~ 16969915 (-) False LOC110495685
XM_036952051.1 mRNA upstream 354245 16947767 ~ 16969915 (-) False LOC110495685
TU1742232 other downstream 165236 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 499188 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 559772 16022606 ~ 16024382 (-) False LOC110495656
TU1742042 other downstream 559800 16022467 ~ 16024354 (-) False LOC110495656
TU1742516 other upstream 344130 16937652 ~ 16942594 (-) True LOC110495686
TU1742514 other upstream 415860 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 848137 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 1048896 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 1094408 17687930 ~ 17702753 (-) True LOC118941106

Expression Profile