RNA id: TU1741463


Basic Information

Item Value
RNA id TU1741463
length 1895
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC110495683
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16613649 ~ 16685491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataacactggacattacaccacagtcagaactataacactggacattacaccacagtcagaactataaTACTGGACATTGCTATGACAAGGTTTACAAATAATGAATGAATTAGTGAATGATTGATTCATGAATGAATGATTACAATGGATGACTAAATTACGATTGGCCAGCTGTAAGGAAGTGGATGACTCCAAAAGTGGTGAGAACTAGTGTTTTTTTCAGCACTTCTGTGGTCATATGTTAATTAGTTAGAGGATGAATGAGACTGGTACTTAGACATTCGTTTAGGATTGTTTTTATAATGTTGACTGACTTGTTTGCATGCTCTGCCTCTGTCATACCACTGAATGTAATGAGCTTCTCTGTGAGTTTATGAATCAAACAAGCATAActtctctttctctgactctttctctgactctttctTCAACACTCTCCAAACTGAAATATCTCTCTTAATTGCTTTGAGGTCTAGTCCAGTCGAAACCTATTCCATAAAAGCTTGAAAACTTGAAGCAAACTACGCTATTATAAGTTGACTGTGTTGTCTAGAATTGATTGTATTGAGATTCTTTGTTTGATATTCTGTGTAGCATTTTGTCTCTGTTAGGTTTCCTGTTTGAAATGGCCTAGAGCTCAACTCAAATGTCAGTTGGTTTGGAGGAAAGTGTTGGTTTTGTGAGCGACAAACCCTCagaaagatggagaaagagagagtatgtGTTTTAGTCCTGTAGGTGTTGCTGGCTATGCTTCAGAATATTGAATGTAAATGAAGCCTACTCCTTAAAGCCTGTCATTATGACAGATATCTGTGTTTTAGGATCTTAGTAATATCAGCAAACAAGGATGGATGCTATTGAACAAAACTCCCACGTGTTCAACTGTGAGCTGGTTTGTTGCTGTTAGAATTATGTTGGACAAACCACTGCAGTACATCAGAACGTTTCCATGATCCAGAACGGAAACGATCACCAAATACTGACACGTAGTAAGAATGTAGTGTTTTCCAGGCAGCGACCCTGTTCTGATCAGAATGCTCTCATCGAGGTATTTTTTGTATATCTTAGAAAAATCctgttttgttatttttatatTCAGAAGGGGAGACCTCTTCACTCACtcgttttttcttcttctggttCAATGAATGTCTAACTAAGCAGACCAGACCgagttgctgttgctgttgcatTGGTGTCTATGGAAGCACCCAGTTAAGTAGACCGTAACATACCATTTTTTCCAACGGTAAACAGCCTGAGTGAACTATCTTAATCTAGCCACCATCTTTGCAGCTGTCACGGGGAAGAGAGACATCGCTCAAATGAAACGATATAGCTTTACAATTCTGCTTTCTGTCAATTAATATACTAAGAAATCCAAGTACAATTGTCTCTTCTGTGTTCCTGCACTGAAATAATACATGTTTCTCACATGAAATATGGGTTTGTTTTTAAAAATATACTTTGAAAGCCATTGACTATGGGTTAATAAATACCTATAGTAGATGGTTATTGTTCTAATATATAACTTTACTGACTTAGTGAGGCTTGAACTTTACAGACAGCCTTTACAGTTTAACATAATGTGTATTTCTCTTTTACAATGCATCGGCACATAGCGTTATGACATCACTCATAACTTTGACTATATTTACATCTATGTATACTTCTGTACACTCTTtaaggtgtgtatatatatatatatatatatatatatatattactgtatgtAGTAAAGGTAATTCATGTACAGTTTTGGGGTCTTTTTCTATACAGTTTTTAACAGATTGAATTCTGTAGATATATGTGGATTTTTGCCAGCCTTTCTGTAGCTATCAATGGCAAACAACTAATTGTACATGTGCTTGTAATAAAACCAAAAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741449 lncRNA upstream 82843 16600226 ~ 16600714 (+) True G1521065
TU1741437 lncRNA upstream 97354 16584149 ~ 16586203 (+) False G1521054
TU1741438 lncRNA upstream 97354 16584149 ~ 16586203 (+) True G1521054
TU1741435 lncRNA upstream 99606 16583665 ~ 16583951 (+) True G1521053
TU1741408 lncRNA upstream 143216 16539828 ~ 16540341 (+) True G1521026
TU1741518 lncRNA downstream 5003 16690494 ~ 16690857 (+) True G1521113
TU1741519 lncRNA downstream 6983 16692474 ~ 16692701 (+) True G1521114
TU1741523 lncRNA downstream 17012 16702503 ~ 16702709 (+) True G1521118
TU1741529 lncRNA downstream 33737 16719228 ~ 16719438 (+) True G1521124
TU1741532 lncRNA downstream 39437 16724928 ~ 16725274 (+) True G1521127
XM_036952043.1 mRNA upstream 480 16613649 ~ 16683077 (+) False LOC110495683
XM_036952044.1 mRNA upstream 480 16613649 ~ 16683077 (+) False LOC110495683
XM_036952046.1 mRNA upstream 480 16613649 ~ 16683077 (+) False LOC110495683
XM_036952048.1 mRNA upstream 2660 16613649 ~ 16680897 (+) False LOC110495683
XM_036952047.1 mRNA upstream 2675 16613649 ~ 16680882 (+) False LOC110495683
XM_036952055.1 mRNA downstream 287592 16973083 ~ 16984148 (+) False LOC110497065
XM_036952056.1 mRNA downstream 287592 16973083 ~ 16984148 (+) False LOC110497065
XM_036952057.1 mRNA downstream 287592 16973083 ~ 16984148 (+) False LOC110497065
XM_036952058.1 mRNA downstream 288264 16973755 ~ 16984148 (+) False LOC110497065
XM_021571069.2 mRNA downstream 302249 16987740 ~ 17001956 (+) False LOC110495688
TU1741359 other upstream 215134 16465513 ~ 16468423 (+) True LOC110495674
TU1741077 other upstream 744739 15938230 ~ 15938818 (+) False G1520748
TU1741078 other upstream 744739 15938401 ~ 15938818 (+) True G1520748
TU1741071 other upstream 760658 15919157 ~ 15922899 (+) True G1520742
TU1740883 other upstream 883676 15796352 ~ 15799881 (+) True LOC110495644
TU1742927 other downstream 938325 17623816 ~ 17627644 (+) False LOC110527374
TU1743047 other downstream 1080728 17766219 ~ 17766694 (+) True G1522415
TU1743076 other downstream 1154178 17839669 ~ 17844014 (+) False G1522437
TU1743077 other downstream 1154178 17839669 ~ 17844014 (+) False G1522437
TU1743079 other downstream 1154178 17839669 ~ 17844014 (+) True G1522437

Expression Profile