RNA id: XM_036952053.1


Basic Information

Item Value
RNA id XM_036952053.1
length 5666
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC110495686
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16915423 ~ 16946521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGAGTTCCCCTGGTTTCTTATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTGGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTGGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTGGAGTTCCCCTGGTTTCATATGCTTTTATTAGTGAGGTGGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGGTTTCATATGCTGTTATTAGTGAGGTCGAGTTCCCCTGTTCCCAGATGTATTTTTTCAATATTTGTTAAATCGTGAAATTTCATGAATTTCTGCAGAATGGGTGGATGGCTGTTTTTTGTTACCCTGTTAAGTAGTTTTTCTTTCATGCAAATCTATACAGTTATAGTGCACATAAAATGTAGGTTGTGTTGTACAAATGGCAATAATAGCTATTTGAATAGAAAAAATAATTGAATCACCCTCAAGGTAGTGGAGATGTTAAATTTCTGCAGGCAGGGGGCGCTACAGTTCATTCTAACGTGGGATTCGGGAGTCCTATAAATTAAATATTGTAGTCCTTGTAATAAACGGTGTATTATGCAAAGCTTTATATTtatacacattaacacacagtTTAATACCGATTGAATAAGTAAATACAATCATGTGAGGGTTAAAATGCAGAAGCCCACTCTGAAATCTAATATCATGGATTGTATTATAAGGAGCTATTATTACAGCAACCTTTAATAGTTGATGTAGACCCAGCTACCTCATGCAAACTTATGCAAATAATTACGAGTAAAATATTAAACCGTCAACAGGGGGACAGTCTCTAAAAGCAGTTATAGTTTTACATCTTTGTGATGTCATTCTCTGTTGGAGCATTTCGCGGCAGCAGCAGGCGACACAGGTTGGGGGAATAACGAGAGAGGGGGGCAGTTGACAGTTTACCAGGCGTAAAAGACAGGGAAACGAAGCTGATAGACTAGCTACAATTTATAGGAAGAAAGCAGCTGTCCGTCAACCTCTCCAAAACGCAGTCATGTTATCTTTATCCATTAGGATATGTTTTTATTCTGAATAGGCTGTTATTCTCCAATCACACCGTTCTCTTCTCCCAAAACATCCCAGGATAGGATAGAGTGGATGTTATTATAATAATAGCAATGAATTCGGCGGAACAGACGGTAACGTGGCTGATAACGTTGGGGGTCTTGGAGTCACCGAAAAAGACAATTTCTGACCCTGAAGGATTCCTGCAGTCTTCTCTCAAAGATGGGGTTGTCCTGTGCAAGCTGGTGGAGCGATTGCGCCCTGGTTCTGTTGAGAAAATCTTCCAAGAACCAAGGAATGATAGTGAGTTCCAGAGCAATATAAAGGAGTTTCTGAAAGGCTGCGGGTCCTTCCGAGTGGAGCCATTTGAGGTCAATGACCTTCTCCAGGGACTGAACTTCACCAAGGTGCTCAACTCTCTGGTGGCACTGGCCAAAGCCACCGAGGacATAGGAGTGGGCAGTGACTCCGTGTGTGCGCGTCACTCGTCCTCGTTACGGATCAAGTCGTTTGACTCTCTGAACACTCAGTCTCCCCGCGGGCGCTCCTCCAAGCTCCTCCACAACCAGTACCGCAGCCTGGACATGTCGGAGAGCGGTGGGCAGCGGGTACTGGTGAGGGCcaagttcaccttccagcagaccAATGAAGACGAGCTGTCCTTCAACAAGGGTGACATGATCAGTGTGTCGCGCCAGGAAGACGGCGGCTGGTGGGAGGGCTCGCTCAACGGCAACAAGGGCTGGTTCCCTAGCAACTATGTCAAAGAGGTCAAAGGCAGCGaCAAACCAGTGTCTCCTAAGTCTGGCACCCTCAAAAACCCTGTGAAAGGCTTTGACACACCAGCTGTCAGCAagacctactataacctggtGCTCCAGAACATTCTAGAGACCGAGACCGACTATTCCAAGGAGCTCCAAAGCCTACTGACCTCATACCTGCACTCACTGCAACCCACAGAcaagttGAGCAGTGCAGACGTCAGTCACATCCTGGGGAATCTGGAGGACATCTCTACCTTCCAGCTGATGTTGGTTCAGTCCTACGAGGAATGTACCAGgcttccAGAGAGCCAGCAGAGAGTAGGGGGCTTCTTCCTCAACCTGCTGCCCGAGATGAAGGCTCTCTACATGGCCTACTGCTCCAACCACCCCTCGGCTGTCAACGTCCTCACAGAACACAGtgaggaGCTGGGGGAGTTTATGGAGGGGAAGGGAGCCAGTAGTCCAGGTATCCTGACCCTCACCACTGGTCTCAGTAAACCCTTCATGAGGCTGGACAAATACCCTACACTGCTGAAGGAACTGGAGAGACACATGGAGGAGCATCATGCCGATCGACCAGACATCCAGAAGTGTTTGACCTCCTTCAAAGGCCTCTCTGCTCAGTGTCAGGAGGTGAGGAAACGTAAGGAGCTGGAGCTGCAGATTCTAACTGAGACGATCAGACGCTGGGAGGGAGATGACATCAGAACCCTGGGCCCTGTCCTGTACATGTCACACACACTTTGCCACACACACGGATCAGAGGAGAAGAGTGAACGCTACCTCCTGCTGTTCCCAAATGTTCTCCTACTGCTGTCTGCCAGCTCCAGAATGAGTGGATTCATCTACCAGGGTAAGCTGCCATTGACAGGAATGCTTATCTCAAGGATAGAAGATTGTGAGATGGTCAAAAACGCTTTTGAAATATCAGgcaGTATGTGTGAGCGGATGCAGGTGGTGTGTAACAACCAGCAGGATTTGCAGGAGTGGGTGGAGCATCTGTCAAGACACACTCAGATCAGAAACACCCCCTCCGTGATCATGACCACACCAACCGCCAAGCCCCAGTCTGTCCCCTGCCACACGctCCCGTCCCATCCCCTGACCCCCACCAGGCACTCAGAGAGTAGGGGTGTATCTGGGGGCCCTGCCTACCACACcctacctcacccctcctcccacgGGGCCCCTCAAACCCCCCCCATGTGGGGTCCCCTGGAGCCCCCCAGCACCCCCAAACCCTGGAGCCTCAGCTGCCTCCGCCCCGCGCCCCCACTCAAGCCCTCGGCAGCACTCTGCTATAAAGAGGATATGAGTAAAAGTCCTAAGAGTATGAAGAAGCTGCTGCCTAAGCGTAAGCCTGAGAGGAAAGCTTCAGATGAGGACTTTGCTACCAGGAAGAGTACTGCAGCTCTGGAGGAGGATGCCCAAATCCTGAAAGTGATCGAGGCCTACTGCACCAGCGCCAAAACACGACAGACACTCAACTCAACATGGCAGGGTACTGATTTGATGCATAACCACGTGCTGGCCGAGCCAGTTGACCGGTCCAGTGTGGACACTATAGGTTGCCGTAGCAGCCTGTCCAGAGGGACCGAGCCCTGGTCTGACCTATCAGAGGACTCGGATTATGACAGTATTTGGACCGCCAGTAGTTACAGGACCTCCTCCGTTTCTCGATCCAGGGAGAAGTCAGGTCTGCACATGCTCTTCCCTGAGGAGGAGAAGATCATCGTGGAGGAGACCACGAGCAACGGACAGACTGTCATCGAGGAGAAGACTCTAGTAGACACGGTGTACGGGCTGAAGGATGAAGTGCAGGAGCTGAAACAGGACAACAAGAAGATGAGGAGAACCCTGGATGAAGAGCAGAAAgccaggaaggagctggagaAGATCCTGAGGAGAGTCCTGAAGAACATGAACGACCCCACCTGGGACGAGACCAACCTGTGAGTGCTCAGGTGACATCGCATCAACATGGTTGAGTTCGGGTTCCACCGTGACTGGACCAAAATTGTTAACCACAAAGCCATCTGACGTAACACTGTGGAACACTGATCTGTCACTGTTGTAAGAGACTGGGTGTGGTCCAAAGTCAAAACAGCCAAATAGCGTCCCTGAATAACTCTGGAAGACTATTGGCTGCGACATGGACCTCCGACCTCTGTGTTGATCTGGGATTGGAAAGAGGCTGGAACAATCACACCAATGGAGATACATCTGACGTCACTGACTAAGTCTCCTTCCGGGTGCTTCTCAAAGGGtgtttcctctctacctctccccttctgcactgatctgaaagcAGGTGAAAACAACATGGGAATTTTCTGTCACTTGTACAGTACTTTAACATCCGTGATGAGGAAAGGAAGTAAGTTCAGACTATTGAGATCCATCCCCTGCATGTAGAGGAATAGTCTCAGGGAATCATTTCTAGAGACAgtggctgcatctcaatagtggTTTGCTCTTCTCTTTGCTGATCTGCACTGGTATGTGCAGTAGGTCCCTAGTGCCTACAAAGGGATTTCCTTCCACCTGTCCAGGTTTATGCAGATGAAAGACGAGGAAAGGTAGCCACggtagactattgagatgcaaccCAGACAATTTTGACAGATGATGATTTTGTCACTGCCTCCATTACCCTGCTGCCAAGCTCCTCAACACTCCCACCCTCTTACCCCACTCTGGAGCATCTCCCTGCCCATTCCTCTGAGCCTTGTAGGAACCTATGGCCAACACACAGAACAGCATAACCTCTAGCTCATTCTGCATGTTTCCATGGAAACATTAGCAATCCGATACTGGAACGTTTTCAGGTGATTTTTGTGGctttctgatgatgatgatgatgatttgaaGTATTCTGGACGAcctatttcttgtttgtttctgtTATTTTACCGGATAATGGACTTTCTATTTTAATGCTTTCCTGAAAACACTGTATTTCTACTTTTGCTTTTCTACTTCTTTGTCACCTATGATTTGTACAGAAACTAACCGTAGCGTCTCAAATTAATATCATGAAATGTGCCTTGGGGAAATGATTCCATGATATTAGCTTACATTTCTGGCAGGCTCTTCAGTTTAAAATGGGTCAAATATTCCAATGCAATATTGATTCCAATGATGAACACTAATGTAAACTACTTATTCTAACTATTTCAGATTCTATATTATGTCTGTAATTTATGTATTTAAATGAAATTGACTGAGGAATGTGTTATGCACTCAAGTCTATTGTTCAGTGAAAACCTCCCATGTCCTCTATTTATTACCTCttcgtctctctcactcttctccaCTTGTCTCTGAATTAAACCAGTAAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742551 lncRNA downstream 1189 16913908 ~ 16914234 (-) True G1521981
TU1742550 lncRNA downstream 1579 16913518 ~ 16913844 (-) True G1521980
TU1742549 lncRNA downstream 3061 16911912 ~ 16912362 (-) True G1521979
TU1742474 lncRNA downstream 132869 16767349 ~ 16782554 (-) True G1521915
TU1742472 lncRNA downstream 147873 16766149 ~ 16767550 (-) True G1521913
TU1742600 lncRNA upstream 85428 17031949 ~ 17032484 (-) True G1522026
TU1742648 lncRNA upstream 227970 17174491 ~ 17174758 (-) True G1522068
TU1742669 lncRNA upstream 254832 17201353 ~ 17201646 (-) True G1522089
TU1742670 lncRNA upstream 256690 17203211 ~ 17203910 (-) True G1522090
TU1742680 lncRNA upstream 268855 17215376 ~ 17215874 (-) True G1522100
XM_021571062.2 mRNA downstream 179539 16732325 ~ 16735884 (-) True LOC110495684
XM_036952042.1 mRNA downstream 304586 16585783 ~ 16610837 (-) False LOC110495682
XM_036952041.1 mRNA downstream 304588 16585783 ~ 16610835 (-) False LOC110495682
XM_036952038.1 mRNA downstream 331423 16516667 ~ 16584000 (-) False LOC110495681
XM_036952050.1 mRNA upstream 1246 16947767 ~ 16969915 (-) False LOC110495685
XM_036952051.1 mRNA upstream 1246 16947767 ~ 16969915 (-) False LOC110495685
XM_036952052.1 mRNA upstream 1246 16947767 ~ 16969915 (-) True LOC110495685
XM_021571066.2 mRNA upstream 24532 16971053 ~ 16972390 (-) True LOC110495687
XR_005037335.1 mRNA upstream 62862 17009383 ~ 17011759 (-) False LOC118941063
TU1742232 other downstream 496505 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 830457 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 891041 16022606 ~ 16024382 (-) False LOC110495656
TU1742042 other downstream 891069 16022467 ~ 16024354 (-) False LOC110495656
TU1742514 other upstream 62861 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 495138 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 695897 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 741409 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 795446 17741967 ~ 17744898 (-) True LOC110510546

Expression Profile