RNA id: XM_036952051.1


Basic Information

Item Value
RNA id XM_036952051.1
length 4987
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC110495685
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16947767 ~ 16969915 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCAATAGAAAACGCTCTGCAACTGCGCAGGATGTGTGACCAACCCCCATTGGACCAACCATATGTGCTGTATCGGCGAACAACGAGGCTGAACATTGTGGATAAAATTAAAAACAAGGAGAATGGGGAAGAAACAGAAAAAGTCAGGCGATGACAGTGCCAAAGACGGTGGCATCGACCTTGACGCCCTAGCAGCAGAAATCGAAGGAGCGGGAGCCTCCAAGGAGCAAGGTAAAGGAAAGGCCAAGAAGAAAAAAGACAAAAAGAAGGACGATTTTGATGAAGACGACATCCTGAAGGAGCTGGAGGAACTGTCTCTTGAAACCACAGGAGCTAAAGGCAGCAAGAAACCAGACGCCACAGACGAGCCGGAGAGTGCCGCCGAGCCCCCGCCACCCACCaaagcagagaagaagaagacacgGAAGGGCAAGCGAGCCAGCCTGGAGGATGACGACGGGGACGACGAAGAGGTTTCGGGTACGGGTGACGTGGAAGACGAAGACAAGCAGAAGGACAAGAAGACGTCTGCTGCccccgctgctgctgctgctgctggctcaGACTCGGAGGACGACGCCTCACGGACCCGGAGGAAACTCAAGGCAGGGAAGAAAGGAGGCCGCAAGGAGGCCTcggacgaggaagaggaggacgacgaTGGAGGtgcgaggaaaggagaggggggaggggaggatgatTCAGATGATGACGACTCTTTTGACGCATCGCAGGCTGGAAAGAAAGGCAAGAAGAAGAAGGGCAAAGCCAAGGCAGAcagtgaagaagaggaagaggaggagggaacctTCAAGATGAAGACGGCAGCTCAGAAGAAggcagagaagaaggagagagaccgcaagaagaaagaggaggacaggGCTAAGCTGAAGAagcagaaggagaaggaggaggagaaagaggggagtatTGAGGTTGCAGCAGTGcctaagaaagagaaagaggtagggaaGAAGAGTGAGCCAGCGGTGGCCCCAGcagcagccccaaccccagcagcaGCCCCAGCAGGAGAGACGGAGGCAGCAGCAGAGATTGAAGATCAGGAAGGGGCTGATCCTCAAGGAGAGGCTGCCGATGAGGTGCTTGAAGCAATTAATGaagaggaagggggagacaaGAAGGGCAAGaaagacaagaagaagaagaagggggacaaggagaaggagaaagaggagaagaagaagggacCCAGCAAGGCCACAGTGAAGGCCATGCAGGAGGCTCTGGCTCAcatgaaggaggaagaggagcgcgccaagaaggaggaagaggagaacctGCGTCGCCTGGAAGAGCAGGAGGCTCAGAGACTGGAGCAgGAGCGTCTGGAACAGGAGCGCAAggagaagaagaaacagaaggagaaagagaggaaggagaggctgAAGAAGGAGGGCAAACTGCTGACCAAAGCCCAGAAAGAGGCCCGGGCCAGGGCAGAGGCCACACTTGAACTCCTGAAGGCCCAGGGTATTGAAGTGCCATCCAAAGACGACTCAGTGCCAAAGAAAAAGCCAGTGTACGGAGACAAGAGGAAAAAGAAGCCCCAACAAGCACAGACCCCTGAAGAGATCTCAGAGGTCATGTCACCCACGTCGGAGACAGCAGAGCCAATCATCTCACAGATGGCAGTGGAAACTCCCGAAGTAGCAGCAGAGGTAGAGCAGAAAGCTGAGTCTGCAGTTGATGACTGGGAGGCTATCGCTGAGACCATCGATCAGGACAAAGAGCTGAAGACGGTCCACATTGAGGTGAAGCCAGAGACACCAAAGCAGCCCCAACAGAAACCCTTGTCACAGCCGGAGGAAGAGGACGACGACGAGgaagaggacgaggaggaagaggatgacgaagaggaggagagtgaggaggaagagaaggagagtcaGGCTCACACAACGCAGCAGGCCCCAGCCACTAAGAggaagggagtgaaggagagctcAGAGTCCAGTAGTGACAGCGACTCTGATGACGATCGCACTAAAGAGGAGCGGATCTACGACAAGGCCAAGAAGCGTATTGAGAAACGGCGAGCAGAGAACATAAAGAACATAAACCTGGACAAGCTCCGCTCCCCCGTCGTCTGTGTACTGGGCCACGTAGACACAGGCAAGACCAAGATCCTGGACAAGCTGAGGCATACACACGTACAGGACGGAGAGGCAGGAGGGATCACCCAACAGATCGGAGCCACTAACGTACCGCTGGAGGCCATCGTAGAGCAGACCAAGATGGTGAAGAACTTCAACAACGAGGCCATTAAAATCCCAGGAATGCTGATCATCGACACCCCAGGCCACGAGTCTTTCAGtAACCTGAGGAACCGGGGCAGCTCTCTGTGTGACATAGCCATCCTGGTGGTGGACATTATGCACGGCCTGGAGCCTCAGACCCTGGAGTCCATCAACCTGCTCAAGGAGAAGAAGTGTCCCTTCATTGTAGCACTTAACAAGATTGACCGTCTGTACGACTGGAAGAAGAGTCCGGACACAGACGTGGTGGCCACActgaagaagcagaagaagaacaCCAAGGATGAGTTTGACGAGAGGGCCAAAGCTGTCATCGTGGAGTTCGCCCAGCAGGGTCTGAACGCAGCCCTCTTCCATGAGAACAAGGACCCGAGGACCTTTGTGTCTCTGGTGCCCACCTCGGCCCACTCCGGGGACGGCATGGGCAACCTGATCGCTCTGCTGGTGGAGCTCACCCAGACCATGCTGGCACGACGCTTGGCACACTGCGACGAGCTCAGGGCTCAGGTCATGGAGGTGAAAGCCCTGCCTGGTATGGGCACCACTATAGACGTGATCCTGATCAACGGCGTTCTCCGGGAGGGCATGACCGTCATCGTCCCGGGGGTGGAGGGACCCATCGTCACCCAGATCAGGGGGCTGCTGCTGCCTCCACCCATGAAGGAGCTCAGGGTCAAGAACCAGTATGAGAAGCATAAGGAGGTGTGTACGGCCCAGGGAGTGAAGATTCTGGGGAAAGATCTGGAGAAGACGCTGGCAGGGCTCCCCCTGCTGGTGGCCCACAAGGAGGACGAGGTGGCCGTGCTCAGGGATGAGCTGGTGCGGGAGCTGAAACAGACTCTGAACTCCATCAAGCTGGAGGAGAAGGGTGTGTACGTCCAGGCCTCCACTCTCGGATCCCTGGAAGCCTTGCTGGAGTTCCTACGAGTGTCCAAAGTGCCTTACGCTGGCATCAACATCGGTCCAGTCCACAAGAAAGACGTGATGAAAGCTTCCACTATGCTGGAGCATGACCCACAGTATGCAACGATCCTGGCGTTTGATGTGAAGGTGGAGAGGGACTCTCAGGAGATGGCTGATAGTCTGGGGGTCAGGGTGTTCAGCGCTGAGATCATCTACCACCTGTTTGATGCCTTCACCAAGTACAGAGAGGACTACAAGAAGGCCAAGCAGGACGAGTTCAAACACATTGCTGTGTTCCCCACTAAGCTGAAGATCCTGCCTCAGTTCATCTTCAACTCTAGAGACCCCATAGTCATgggagtcaacgtggaggctggGGTCCTCAGACAGGGAACCCCACTCTGTGTGCCCAGCaaggggTTTGTGGACATTGGCATCGTGACCAGCATTGAGATCAACCACAAGATGGTGGACAGTGCCAAGAAGGGCCAGGAGATCTGTATAAAGATCGAACCGATCCCCGGAGAGGCACCCAAGATGTTCGGCCGACACTTTGAGGCCACCGACATCCTCGTCAGCAAGATCACCAGAGCGTCCATCGATGCCCTGAAGAACTGGTTCAGAGACGAGATGGGCAAATCTGACTGGCAGCTCATCATGGAGCTCAAGAAGACTTTTGAAATCATCTGAACGGAAGAACGGGCACACACCTTCATGTCTGCAGcacacctacacacaaacacacacaccactgatcaTGTGACACCtgatcaaaaacacacacacacacattgttcatCACAGCCACGTATGCATACATCCATAAATGGTGGGAGCAGTGCAgtgtccccctctcccccatcccctcccctctGGTGGGTGGGGGAGTGTATTTTTAGAGGGGAAACAGTGTTTTTCTGTGAGAAACCAAACTATTTCCCGCTGTTGTTAACAGTGACAGTTTAGACAgcatcaacacacacactattccaaCGTGCCTGTTGTTTGGAATCATCTTGagttttgtttttcattttgccgctctctctctcactcaccctccACATCCGTCTGCTGCTGGAGTCCTGCCCTCTGTAATCACTCTGGTGTTCAGGCTGGGGTGAGACTGGAGAGGGGGCGAGTGGGAGTGAAGAAAGCTGGGTCAGGCGTCACTGGAACCACAGATCTACAGAATTCAGCAAACTGGGTTTGACAAGTTTCCGTGGGTGCCATGTTGGCACCGGAAGTCGCAAGGAGAATGACGTTCCACTGAGAATGCAAATGAGAACCTTATTGTTATGACACGTTGGTTGCCAACATGGAGGCTAGTTTGCTGAACTCTTTATATCTATCACGGATCAAGGGGAGCTGTGCGCCAAAGGCCTGAattagaagaggggagaggggaggcatTCTTACCAGAAGTTTTAGACGTCTGAATAATACGACCTTGTCAGTGTTTTCTCTTTTCTTGAATGCAGTTATTTTATGGTCCTTTTAAAAAGCCCCTCCCTCTCTGACATCACCACCACCCATCACCAGCCCCCCTGTCAGCGCAGTTCGACTGGTGCCTACGGACCTTTTTTTACCATGAATGAACTAGGTGACAAAATAGgcggtccctctcctctctacttgaGTTCAAAATGTAAGAGATAATAAAACATCTACATCAATAAAGACATATTTATAGAAGTTGCATACTCTGCCCCCTCTGCCTTGTTGTATATTTTGGATAATGGTATGAATGGAATATGCATTGAATTCAAttctataaaaaataaatatgaagTGCTACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742562 lncRNA downstream 12449 16935056 ~ 16935318 (-) True G1521992
TU1742556 lncRNA downstream 20772 16926648 ~ 16926995 (-) True G1521986
TU1742555 lncRNA downstream 21666 16925898 ~ 16926101 (-) True G1521985
TU1742551 lncRNA downstream 33533 16913908 ~ 16914234 (-) True G1521981
TU1742550 lncRNA downstream 33923 16913518 ~ 16913844 (-) True G1521980
TU1742600 lncRNA upstream 62034 17031949 ~ 17032484 (-) True G1522026
TU1742648 lncRNA upstream 204576 17174491 ~ 17174758 (-) True G1522068
TU1742669 lncRNA upstream 231438 17201353 ~ 17201646 (-) True G1522089
TU1742670 lncRNA upstream 233296 17203211 ~ 17203910 (-) True G1522090
TU1742680 lncRNA upstream 245461 17215376 ~ 17215874 (-) True G1522100
XM_036952053.1 mRNA downstream 1246 16915423 ~ 16946521 (-) False LOC110495686
XM_036952054.1 mRNA downstream 1248 16915423 ~ 16946519 (-) False LOC110495686
XM_021571062.2 mRNA downstream 211883 16732325 ~ 16735884 (-) True LOC110495684
XM_036952042.1 mRNA downstream 336930 16585783 ~ 16610837 (-) False LOC110495682
XM_036952041.1 mRNA downstream 336932 16585783 ~ 16610835 (-) False LOC110495682
XM_021571066.2 mRNA upstream 1138 16971053 ~ 16972390 (-) True LOC110495687
XR_005037335.1 mRNA upstream 39468 17009383 ~ 17011759 (-) False LOC118941063
XM_036952070.1 mRNA upstream 42212 17012127 ~ 17053477 (-) False LOC110495689
XM_036952068.1 mRNA upstream 42212 17012127 ~ 17053478 (-) False LOC110495689
XM_036952069.1 mRNA upstream 42212 17012127 ~ 17053478 (-) False LOC110495689
TU1742516 other downstream 5173 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 528849 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 862801 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 923385 16022606 ~ 16024382 (-) False LOC110495656
TU1742514 other upstream 39467 17009382 ~ 17011378 (-) True LOC118941063
TU1743542 other upstream 471744 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 672503 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 718015 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 772052 17741967 ~ 17744898 (-) True LOC110510546

Expression Profile