RNA id: XM_036952055.1


Basic Information

Item Value
RNA id XM_036952055.1
length 3146
RNA type mRNA
GC content 0.55
exon number 19
gene id LOC110497065
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16973083 ~ 16984148 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCGTATGAAAAGCGGTTTAGGAGCCATTCAGGGTTTACAACAGCAAACCCCAGTGATCTATCCAGATAACCTCACGTAACTATTTGCTAGCTACAGCTATAACTATTTCTTCCATAAAGCTGCAGAGGTTAGTGTGGCTCGTGTGCGGGCTGAGGAGGTGCAGCTTCAGcagggggtgaggggagggggaggaggaggtggaggagctaTCTTTGGAGAACCACCAGGAGCCAGGCCATATCAGTACACCAGCTCAGCTGCAGGAAGAGCAGGACCAGCAGGGCCCCACACTGGAGAcaacagaggaccacacacaGCATGCAGAGGCATAAAGAAAATAGTATAATCAATAGCCTACATTTACCATCCACCCTGGCTTCTGGCTTCTGGGCTATGTCTCAGGATAGCGAGTCGGCAGACACTGAACCAATAGAACTTGAGACCCAGCTGAACCCCACAGTAGAGCAGAATCAGGAGCAGGACCTGCAGGCCTTACTGGACCAGTTGCACCAGGAGAGAGACAGTCTGAACAGACTGGTGCAGAAGCTCAGCCTCACAGagagagagcaggtccTGTTCACAGAGCCAGGCAGCAGGGGGAAACGTGGCTCTCGTCTGGACAGCTTCTTGCGGagcgtggaggaggagagggactaCTACAGACAGGAAGCAGACAGCCTGAGGAGGATGCTGAGGGGCAGGTGCTCCTGTAGCCCCTGTCGGGGGCACCTCCAGAGCCGCAGCCCCACCCGCCAGTCCCCTGTCAAGGGGGGCAGCTATGATTCTGAGCTGATCAGGGTCTTGAGAGAGCGGGACGAGATGCAGAACATGCTGGATAAGTATGAGCGCCACCTGTCAGAGATCCAGGCCAACGTGAAAGTTCTGACTGCCGACAGAGACAAGACCAGCATGCACTACCAGCAGGCCCAGCAGGAGATAGCGTCGCTGCGTCGCGAGGTACTGAAATCCAAGTCGTCGCGCGCAGCTAAGAGCAGTGTCACTGTGTCGGCTCAGAGCATCCTGAAGCGCGTGGAGGCGGAGAGAGACGAGGCCAAGGTCGACCTCCACCGTATGAGCACAGAGAGGGACAGTCTGAGGGAGAGACTCAAGATCTCTCAGGAGACAGCCATCAGTGAGAGGGCTCATCTGGAGCAGAGGGTGGAGGACCTGCAGACAGCCATTCTCACTCTGGAGCATGAGCGGGGGGACCAGAAGAGCCGTCTTGCCCTGATGAGGGAGTCCATGATGGGGCTGGAGGAGGAGGTCCACACCCTGGGTAGGAAGCTGACCGCTGCTGAGGACGAACACAGCAGGACCAGGAACGAGTGTGTCATGCTGAGACTGTCCAACAGTGAGACACAGAACGCCCTGAGTGACAGCCAGCGCAGACTGACCTCCCGCATCGGAGAACTACAGAACTCCCAGGAGAGGAACAAACTGCTGGACGAGAAGAACGACTCTCTACTGAGGCAGATGTCTGGTCTAAGAGAGGAGGTGAGCAGTCTACAGTCCACCATCACTGACCTGGACCAGAGGAGAGACTCCCTGCAGGAGCAGCTGGAGAACAAGACTGACCTCCTTAACTCAGCCCACAACCAGCTGGATGACAAAGAGAAGACCATCAGGAATCTCAGGTTGTCCATTGAGGATCTAGAGACATCAGCAGAGAGTGTTCGTGAGGAGCTGGCAGGGcgggagagggagctggaggctTTGAGGAGGAGGCTGGGGGATGCGGAGGAGGAGCTGGGGGCTTTGGCCAAGTTGAAGGATTCCACCCTGAGGGAGAATGCCCAACTCCAAGAGGAACTGGACATGAGCCGCCTCAACAACCAGGCCCTGGAGCTGAATTCTGAGGACTCTGCCCAGGAGGTGAATGAGCTGCAGAGGAAGGTACAGGACTATGTGGCTGACATCTCCCGCACCGAGAACCTGCTGTCCACCAAGgAGCGGGAGTGCAGGGAGCACCAGGATGCTCGGCGGCGTGCGTCGGCCCAGGCCGAGAGCTGGGAGGGGCAGGCGCGGCAGGCGGAGGGGAGCATCAGCGAGCTGAGGCTGGAGCTCATGTCCTCAGACATGGAGAGACGCAGACTCAAGGAGAAGGTGGAGGCTCTGGAGGCCAGTCTGCAGGAGGCGTTGTCTGCAGAGCGGAGCTGCAGCAGCCAGGTGTCTCAGCTCAACAGGAGTCTGCTGCACACTGAGGAGCAGTTGAGACAGACCCAGGGGGAACACACCGCCACTCAGACTGACCTGGAGAAGACCAGGGAGCTCTGTGTCAAACTGGACTCCAGCAAGGAGGCTgTGCAGTGTGAGCTGGAGCTGCTCAGGAAGCAGCTGTCCAGTGAGCGTCTGAGCATGAAGAGCCTGGAATCCATGCTGGTGTCCACCAGGGAGAAGGAGCTACACCGACAGCTCAGCTCCCAGGAGAGACACACCGAGATCCAGCTGCTCAGGGACAAACTCACCGCGGCCGACAGCAAGGCgagctCTCAGCGTAGAGAGGTGGCTACATTGAGTACTCGTTCGGCACAGCTAGAGGCTGACCTGGACATGACCAAAAGACAGCTATCTACTGAGCGGTTTGAGAGggAGAGGGCAGTGCAGGAGCTGCGTCGTCAGGGTCTGTCGTCATCGTCCTCTGGCCtgcatccctcctcccctcacctgcGTCGCTCCCTCAGCCCCAGCAGGCCCCTGTGGTCCACCCCAGACCACCTGGCCAGAGAGAGATCCCCAGAGAGgAGCCTGGGGTTCAAGGACCTCTACGACTGAACAGATCTCTCTCTGGAGGAAAGATACCCCAACCTTCTCTCTAGTCCTCACTGTGCTATGATGTCATTCTTCAACTCAAACTTGTGATGTCATGATCAGGACCTCAGGTTCAGAACAACCCTCCTAGACCGGAAATAGTTTCAACAAGTGTtatctcaaatgtattttttattaaattGTACAAATGAACTGACATCACTGTGTTTGGTTGTGTATTGATCTGTAAAATGAGTGACCATTTAGTATATTTTTGATGAAGATTTGATTCAAATGAACTACAGCTAAAAGAGGGAAATTATGTTCTTTCATTAATGTATTCTATTTTTTGTAAAACTTCTGAGAGAAGGgctttaataaaaaataatattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741653 lncRNA upstream 27994 16944726 ~ 16945089 (+) True G1521240
TU1741647 lncRNA upstream 35826 16935961 ~ 16937257 (+) False G1521235
TU1741648 lncRNA upstream 35826 16936963 ~ 16937257 (+) True G1521235
TU1741645 lncRNA upstream 37944 16934919 ~ 16935139 (+) True G1521234
TU1741641 lncRNA upstream 40616 16927179 ~ 16932467 (+) True G1521230
TU1742658 lncRNA downstream 208127 17192275 ~ 17192511 (+) True G1522078
TU1742661 lncRNA downstream 210855 17195003 ~ 17195262 (+) True G1522081
TU1742671 lncRNA downstream 220284 17204432 ~ 17204648 (+) True G1522091
TU1742679 lncRNA downstream 231180 17215328 ~ 17215962 (+) True G1522099
TU1742730 lncRNA downstream 279904 17264052 ~ 17264563 (+) True G1522146
XM_036952043.1 mRNA upstream 290006 16613649 ~ 16683077 (+) False LOC110495683
XM_036952044.1 mRNA upstream 290006 16613649 ~ 16683077 (+) False LOC110495683
XM_036952046.1 mRNA upstream 290006 16613649 ~ 16683077 (+) False LOC110495683
XM_036952048.1 mRNA upstream 292186 16613649 ~ 16680897 (+) False LOC110495683
XM_036952047.1 mRNA upstream 292201 16613649 ~ 16680882 (+) False LOC110495683
XM_021571069.2 mRNA downstream 3592 16987740 ~ 17001956 (+) False LOC110495688
XM_021571067.2 mRNA downstream 3594 16987742 ~ 17001956 (+) False LOC110495688
XM_021571068.2 mRNA downstream 3594 16987742 ~ 17001956 (+) False LOC110495688
XM_021571070.2 mRNA downstream 3594 16987742 ~ 17001956 (+) False LOC110495688
XM_036952059.1 mRNA downstream 3594 16987742 ~ 17001956 (+) True LOC110495688
TU1741359 other upstream 504660 16465513 ~ 16468423 (+) True LOC110495674
TU1741077 other upstream 1034265 15938230 ~ 15938818 (+) False G1520748
TU1741078 other upstream 1034265 15938401 ~ 15938818 (+) True G1520748
TU1741071 other upstream 1050184 15919157 ~ 15922899 (+) True G1520742
TU1740883 other upstream 1173202 15796352 ~ 15799881 (+) True LOC110495644
TU1742927 other downstream 639668 17623816 ~ 17627644 (+) False LOC110527374
TU1743047 other downstream 782071 17766219 ~ 17766694 (+) True G1522415
TU1743076 other downstream 855521 17839669 ~ 17844014 (+) False G1522437
TU1743077 other downstream 855521 17839669 ~ 17844014 (+) False G1522437
TU1743079 other downstream 855521 17839669 ~ 17844014 (+) True G1522437

Expression Profile