RNA id: XM_021571069.2


Basic Information

Item Value
RNA id XM_021571069.2
length 3620
RNA type mRNA
GC content 0.52
exon number 10
gene id LOC110495688
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 16987740 ~ 17001956 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAACACTACCCTTGCagcgcctctctcctctctctctctctctctctctctccctctctccactccctctctccctttctgtcctaTCACCTCTCTCCtatcacctctccttctctcgttcCCTTCATTTGCAGATGGCGGTGTAGTGAGGTGGCTGAGGaccagtatgtgtgtgagtgcgtggaAGGACACATCCTCCccttggagagaaagagaaacagagaaagagagagaggaagaagaagcagCTGCTCTCCAGTAACAGGGTAAGAGCAGCTAACTCCAGTCTCCTGTCATGGATACCAACGCTGGGGAAGTGGAGGACTCAGGAGAAGAGCTCACAGGGAGGAAGAAGTCTCGGTTCAAGCTGCTGAAGAGTCGTCTGTTTGGCCGTCTGAAGAGGAAGGAGACTGAAGGACTGATGAAGCAGAGCCAGTCCGCCAGTGATGTCACTGCTGATGTCATAGCTCCGAGGGACGACGACTCAGAGGATGACTGTTTGGGCGGTCCAAATACACTGGGGTCCAGAGCTCTGTCACATGACAGCATCTTCCTGGCTGACCAATCACAGAGCTCCTCTGAGCCGACGAGGGTTCTGTCTCAGGAGAATGTACACAGCAGGATACGAGAACTGCAGCTGAAACTGCAGCGGCAGAACATGTGTCTGGGCCCTCCCCCCTTGCTGATCCCTGGAAAGAGAATGGAAGATTCCGGAGCTGCCTCTGAGGATGATGGTTTACCCCAGAGCCCTCCAGAGATCTTGTTCCATGACCGAACAGCACAGGGGCCTTCCTACAAGTTCCCTGACACTCACAGGCACCATAGCTCTCTGAGTTTAGCAGGGACaggaagtgaggaggaggagcagTGCCTCTCCCAGCcctcctcccgtcctctctccccGAATCCTGCTTCCCCCTGTGATCCAGAGCCCTCCCCTGCAGTGGACTTtaccagcccagcccagtacaCTCCTAGCCTGGACAGCTCTGCCGCACGTCACCGCATGTCTGTTAAACCCAGGAACCAGAGGGCCAGCGCCAAGGGAAGGAAAGGTCCCCTGAGAGCAAGCAGACTTGGCTCAGAGAGCCTGAGTGACCTGGACCCAGACCAGCCCCTGTctgagagggaggaagagcagGATGGAACAGAGGAcgaggacagagaggaagaggaggagagggagcgacTGTTCTCTTCATCTCCAAAAGACTCTGAGGACAAGCCCTGGCAGTCAATACCCCCTGGTGGTCAGAAAGAGGTATTACAAAGACAAGAGTCCTCCGAGACAGAGGGACGCGTCACCACcaaccctctctacctccaggcTATGACCTCTCCTCTACCAGAACCCATGACCAAGACCTCCATCCTGGAGACCCCGAGCCTGCCCACTCCCCCTTCAGCAGCAGTGGAGGAGCCACAGAAGCCCCCGGAACCTATCCGGGTCAAACGCCCAAGAACTCTCATCCAGGATAATTCAGACCGGGGAAGTCGGCCTGGGTCTACATCGGAAAATACCCTCTCCAGGCCTCTCAGTCCTGTCTATGGATCAGATAATGTCACTTCCATCACAAATCAACTGCCCTCAAAAGAGAAGCCAGAGGAGAATATGACCCCAGCCACCTCTAACAAGGGAGACAGGTTGAGCAGAAACACACAGGGTGTGAGCCTAGCAGACACCAGCAGCTCTACACACCACTCTGCTCTACCTACCCCTGCCTCTCGCGTTAtaagacaaacacagagacctgCTTTTGAGAGAGAGTCTGTCAGAGAGACTACAGCAGTCCCACTGTCGGGCGTTAATGAAGAAACCTCCAAATTGGACCTGGTGCAGAGGACAACAGGGCCACCTACTGGCCCTGAAGACACACTGCCTGGAGCAAACAGTTTCTCCACCTCCTTGAGACAACGTTCCAAGAGCGCCACTGGCAGAGCCCAAACAGGGACAAGAAATGAGGAGATGAATGCAGAAGGAAAAGGAGGGGAGGGTTTGGTGGCCAAGAACCCTCATCAGGAGTCTGTCAGAAGGCAAGAGGTAAAACCAGAGCAGGTCACATTTAAAGGTCTGAAGGAAAACCAACCACAACCCTCACGTCAGGAGAGAAATGTACAAACAGAGGTAGAAGTAGTGGAGGAGACAGGactgaagggaggagagaaaagggatGGGCAGAGTGAGGGAAATGAGGagaaggagcaggagcaggagaggaggagtgctTTCGGAGTGAAGCTGCGCACCACTTCTCAGTCTCTGAAGTATCGCTTGCAAAGGGACCAAGAATTCAGGGTTAAGTGTCCTATTGTCTCAACAACTGCAGAACCAGTCAAAGGCGAAATTGGCACAAGTTCAAAGGTCAGGGATGACTTGGCAAATAAGGCTTCGAGGAAGGGCCCGTCACAAGTGTCTGACTGCCCCCCCTCATACACCCCTGAAAGAAACAGACTCGACGTGAACCAAGACAAAGGCCCATCCTCCAGACCTGCTCTGGGGCTCCCAAGATGGGCTGAGACCCCTGGGTCTAATGGGTCAGCTGGATCGGAGCCTGTCTGGATGTCCATGGCCCGGGAAAAGACCAGGAGTCTCCAACAGCATCTCAGTCCAGAGACAGTGCCTGGGACAGGGGGGACAACAACGCCCCAGTACACCCCATCACCACTGCCAGCTCCAACCCCAGACCCACAGCCAAGATTACAACCAACAGCTCAGCCATCAACACAACCTCCATCACAATCACAGCCAAGCACAAAAACAGCCTCGCAAAAACAAACATCACCCCCAGTGGTACAACCCCCATCTCAACCAATACCAAGCGGTAGACCAATCCTACGGGGAATGCATCTGACAGCTAAACTCAAAACATTGCCTTCAGATCAGCCTAACACACAAACAGCATCACAACCGACACCACAAGGAACAGCTCAACAGCTGACACAACCGTCCTCCCAACCTCACACGCCAACCAGACCAACTCTACGAGGAGCATCTGAGAGATCCTCCACGTCTCTGAAGAGAGCTGAGAAGATGCCTGTGGAGAAATGGACAGAAAGAGCGCTCCCGACTGGGACTATGGAGGAATCTAGCAATGGTCAAATTGAGATTCACATCGCAAATCCTGAGATACcttcttcttcatcatcatcatcctcattgtCACACCGGGGTCAGCCAACCTGGATGGAACTTGCCAAGAGGAAATCTCTGGCCTGGAGTGACAAGACTATGGACTAAGAGAaatgcgcgcgtgcgtgtgtgtttgagggAGGTAAAGAGGTTCCTAAAGAGAGTAAGAAGAAgactgaaataaaataatgatttGTTGCTGACTGTATTATTTGAACCTACTGGATTCAGAGTTTAAAACCTCTTTCCCTTACTATGCCTTACTCTTCTAAccattacatttttaaaattacTTATATTTCACATCGGCCAGACTGATGCTAAACTACTGCGCATAACAACACTAAACCAAGAGGTCTGGAATTTTATGGCAAGAAGGCATACTCTTGTTTGTTGCTGGTTCAAACTCCGATTCAGTTTTTTCACTGCTTTTGACATATCACTCCATGCTTGATCCCTGTTGTCTggaataaatatactgtaaatTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1741694 lncRNA upstream 3609 16982740 ~ 16984131 (+) True LOC110497065
TU1741653 lncRNA upstream 42651 16944726 ~ 16945089 (+) True G1521240
TU1741647 lncRNA upstream 50483 16935961 ~ 16937257 (+) False G1521235
TU1741648 lncRNA upstream 50483 16936963 ~ 16937257 (+) True G1521235
TU1741645 lncRNA upstream 52601 16934919 ~ 16935139 (+) True G1521234
TU1742658 lncRNA downstream 190319 17192275 ~ 17192511 (+) True G1522078
TU1742661 lncRNA downstream 193047 17195003 ~ 17195262 (+) True G1522081
TU1742671 lncRNA downstream 202476 17204432 ~ 17204648 (+) True G1522091
TU1742679 lncRNA downstream 213372 17215328 ~ 17215962 (+) True G1522099
TU1742730 lncRNA downstream 262096 17264052 ~ 17264563 (+) True G1522146
XM_036952055.1 mRNA upstream 3592 16973083 ~ 16984148 (+) False LOC110497065
XM_036952056.1 mRNA upstream 3592 16973083 ~ 16984148 (+) False LOC110497065
XM_036952057.1 mRNA upstream 3592 16973083 ~ 16984148 (+) False LOC110497065
XM_036952058.1 mRNA upstream 3592 16973755 ~ 16984148 (+) False LOC110497065
XM_036952043.1 mRNA upstream 304663 16613649 ~ 16683077 (+) False LOC110495683
XM_021571072.2 mRNA downstream 3073 17005029 ~ 17009539 (+) False LOC110495691
XM_021571073.2 mRNA downstream 3124 17005080 ~ 17009539 (+) True LOC110495691
XM_021571074.2 mRNA downstream 63921 17065877 ~ 17069278 (+) True LOC110495692
XR_005037326.1 mRNA downstream 446482 17448438 ~ 17469192 (+) True LOC118941044
XM_036952074.1 mRNA downstream 549298 17551254 ~ 17554607 (+) False LOC110527364
TU1741359 other upstream 519317 16465513 ~ 16468423 (+) True LOC110495674
TU1741077 other upstream 1048922 15938230 ~ 15938818 (+) False G1520748
TU1741078 other upstream 1048922 15938401 ~ 15938818 (+) True G1520748
TU1741071 other upstream 1064841 15919157 ~ 15922899 (+) True G1520742
TU1740883 other upstream 1187859 15796352 ~ 15799881 (+) True LOC110495644
TU1742927 other downstream 621860 17623816 ~ 17627644 (+) False LOC110527374
TU1743047 other downstream 764263 17766219 ~ 17766694 (+) True G1522415
TU1743076 other downstream 837713 17839669 ~ 17844014 (+) False G1522437
TU1743077 other downstream 837713 17839669 ~ 17844014 (+) False G1522437
TU1743079 other downstream 837713 17839669 ~ 17844014 (+) True G1522437

Expression Profile