RNA id: TU1742514


Basic Information

Item Value
RNA id TU1742514
length 1355
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC118941063
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17009382 ~ 17011759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGGTTACGGGAACGGACGTCTTTATTTCGCGCAGAGCAATGGCTTCTCTTAATGTTGGGTCGACATACTCAAATTATACAGACTTTAATAATGCGCTCACCGCATTCGAAAATGAGAATTTTGTCCAGTTTTACCGCCGCGACGCAAGAACAATTGAAAAAGTCAAACGGCTGGACAATAATTAAGactagacaaaactagagcctgcagaaatTGTATTTTGgagtggtgtcaaaaaagcagagcatctctgtATTGcggctagacctctccccatctttataaCTATTGAATCTAtatttttgaccatgacagtttacaatctaagGTGTGCCTGGTAGCTATGGCCCGTTGACCAACCTGGCCCTTGCAGTGAAGATTGACCCCACCCTCCCTCAGAAACTCAAAGGTCTCTTCATCATGGGAGGCAACACTGACTAGTTCAACTTTGCTGCCGACCCGGAGGCTGCTTACATCGTCCTGAACCGCTTCTTCTGTCCAACCTACATCGCTACCTGTGAGTTCTGCTGTGAGAACAAGCTACCATGGTCATTCTGTGACAACTGGCTGGCCCGGGACTCGGACAAGGCCCGGGACTCAGACAAGGCCCGCTTCGTGAAGAGCATCTTCAAACACACCGTGGCCACTTGTGCTCGCTACCAACGGGAGATGACTGCTGGCCCGGGTTTTGTCGTGCGACTCGTACGCCATGGCGGCAGCCATCAATGACGGTTTCGTGTGGGTGTCAGCCGGTGGCGGTTACGGTGGAGCTTCAGGGGACCTACACCCGGGGCATGATGGTCCTGGAGAAGGAGCACCAAGTTGTCATCATGAGGACAGTGGACCTGGAGAGCTTCAAGGAGATGTTGATGGACTCCCTGAAGTAATAAGGGAACTACACCTATACCGCTGTCCCATATTTCTTTCAATTGTTTATTTTTACAAAATTATAGGGGAGGGCTCAAATTCCACTCTTCGTAAAGATCTTGATAAGAGGGAGACAGTTTGAGGTGGTGGATGTGTCTGTTTTGACTTACCATTATGTTCTGAATCACCATTTTACTTTATCAGGAAATAAATATTTTACAGTTGtcttactatatatatatatatatattatgaggTCAACAGCAAATGTCCATGAGTGATATCAGTTGTTTTAGATTGCATTTCTTTCCTGTTAATGAAAAGGGGGATGAAGTAAAGCCTCTTTATTGAAAGTGCCCAGGAATGTACTCAGAGAAACGCCCCTTAGTCCAATTGAAATACAAATTCACCACTTTTCATTACTTCTTTCTCTTCAATAAACAAGCTTTTCAGTACGTcatgtttaaaataaaaaataaaaacaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742562 lncRNA downstream 74064 16935056 ~ 16935318 (-) True G1521992
TU1742556 lncRNA downstream 82387 16926648 ~ 16926995 (-) True G1521986
TU1742555 lncRNA downstream 83281 16925898 ~ 16926101 (-) True G1521985
TU1742551 lncRNA downstream 95148 16913908 ~ 16914234 (-) True G1521981
TU1742550 lncRNA downstream 95538 16913518 ~ 16913844 (-) True G1521980
TU1742600 lncRNA upstream 20571 17031949 ~ 17032484 (-) True G1522026
TU1742648 lncRNA upstream 163113 17174491 ~ 17174758 (-) True G1522068
TU1742669 lncRNA upstream 189975 17201353 ~ 17201646 (-) True G1522089
TU1742670 lncRNA upstream 191833 17203211 ~ 17203910 (-) True G1522090
TU1742680 lncRNA upstream 203998 17215376 ~ 17215874 (-) True G1522100
XM_021571066.2 mRNA downstream 36992 16971053 ~ 16972390 (-) True LOC110495687
XM_036952050.1 mRNA downstream 39467 16947767 ~ 16969915 (-) False LOC110495685
XM_036952051.1 mRNA downstream 39467 16947767 ~ 16969915 (-) False LOC110495685
XM_036952052.1 mRNA downstream 39467 16947767 ~ 16969915 (-) True LOC110495685
XM_036952053.1 mRNA downstream 62861 16915423 ~ 16946521 (-) False LOC110495686
XM_036952070.1 mRNA upstream 749 17012127 ~ 17053477 (-) False LOC110495689
XM_036952068.1 mRNA upstream 749 17012127 ~ 17053478 (-) False LOC110495689
XM_036952069.1 mRNA upstream 749 17012127 ~ 17053478 (-) False LOC110495689
XM_036952071.1 mRNA upstream 749 17012127 ~ 17053478 (-) False LOC110495689
XM_036952064.1 mRNA upstream 749 17012127 ~ 17053479 (-) False LOC110495689
TU1742516 other downstream 66788 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 590464 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 924416 16055128 ~ 16084966 (-) True G1521546
TU1742043 other downstream 985000 16022606 ~ 16024382 (-) False LOC110495656
TU1742042 other downstream 985028 16022467 ~ 16024354 (-) False LOC110495656
TU1743542 other upstream 430281 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 631040 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 676552 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 730589 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 1040602 18051980 ~ 18053825 (-) False LOC118941107

Expression Profile