RNA id: XM_036952063.1


Basic Information

Item Value
RNA id XM_036952063.1
length 5546
RNA type mRNA
GC content 0.52
exon number 23
gene id LOC110495689
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17012127 ~ 17053482 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGGAGGTTCCTTTGTTGGCAACGTCACATGACACAATGTAGCAGAGAGGCGAGATCACACTGCGGAGTGCAGACAGGCTGGAAACAAATGAAACAAGCGAGCGTCAACACCAACGGCTGTCTCTTTCCCACCAAATTAATTGTCATCAAACGTCGTAGAAAGCTCGTAGAGGAAGGCCCAGGCGGGGCCGTGGAGTGGCTCAGTACAAGGGTGCGTgttctcaccaccaccacccgtgcctctcctcccccctggAGCAGGCCAGCAGGATCAGGATGTCGGAGGCTAGAGAGCGTAGCCCccgccaccagagaccctggtcAGTGTACCGGGCCAACACCTTTGACCTCTCCTCTGAGATGATCGGCCTGGCACTTGCAGGGAACAGCCAGGATCCAGATGAGCCTGTTCTAGAGTTCAGTGTGGcctGTAATGAGTTGGTGACCCCAGCTCTGGAGCGGAAACCCAACAGCTTTGTGGCAGTGAGCTGCACCACCCCTCCCCAGGCCTTCTGGACCAAACACTCCCAGACGGAGATCATCGAGGGCACCAATAACCCTATATTCCTGAGCAGCATAGCCTTCTTCCAGGACTCTCTGATCAACCAGCAGACGCAGGTCAAGCTGTCTGTGTACGACGTCAAGGACCGCTCTCAGGGCACGATGTATTTATTGGGCTCAGCTCTGTTTCCTGTGAAGGAGTTGCTGCAGGAGAAGAAccacaggttacacctgaccctgagATCTGCAGAGAACAAGCACGTGGGGAACATCACCATCATTGCCTGGCAGATAGAGGAGAAGCGGGACCAGAGGACTCTGCCTGTTGCCAGGTTACCAGACGCCATCAACGGCAGGACCGTGCTTCCGGTGGATGAGAGCCTGACAGAATCCATGGGTGTCAGAGCCAAATATGCATCTTTATGCAAAGACACCCTGCTGACATCAGtgtTTGGAGGCACCATGTCCAGAATGTATCGTTTCCCCACCACGGACGGTCACCACCTGCGGGTGCTAGAACAGATGGCTGAAAGTGTGTTGTCTCTCAACATCCCCAGACAGTATGTCAAACTACTGCTGGAGGAGGACGCTGCCAGGGTTTGTGAGCTGGAGGAGCTGGGGGAGTTGTCACCATGCTGGGAGAACCTACGACGACAGATAGTCACTCAGTACCAGAACATCATCCTCGCGTACCAGGAGACTCTCTCTGACCTCACCAACTACAAGGGTCCGTCGTTCAAGGCCAGTAACCTGAAGGCAGAGAGGAAGCTGGAGTTCATACCCACTAACCTTCATGTCCAGAGGATGAGGGTGCAGGATGAGTCTGGCTTTGACCACACGTATGACGTGGTGACTATCGGGGCTCCCGCCGCCCACTACCAGGGCTTCAAGAACAGCGGCCTGCGCAAGCAAATCACCAAGTTCGAGGAGGCCAAGAAACATGCCCTGTCCAGCTGTCAGTCTATAGTGTACATCCCCCAGGACATTGTCCGGGCCAAGGAGATCATCTCCCACATCAACACCCTGAAGACCCAGGTCAGCTACTATGCTGAGAGGCTGTCCCGCGCCGCCAAGGACCGCTCTGCCAACGGTCTGGAGAGGACCCTCGCCATCCTGGCTGATAAGACTCGCCAGCTGGTGACTGAGTGCGACTGCAAACTGCTGGCCTCGGCCATCCAGGCGCTGAACGCGGCACGCCCCGAGTACATCGCCTCCAAGGCGTCACCCTCCGCCGACGCCACCGATCAAGTAGTCCTGCGCAACGACCAGGACACGCTGTTGGCCAAGTGGAGCGGATGCAACAGCCGCTCCTCGCTGCACGTCGACTGGCACGAGGAGGAGTGGGAGAAGGTGTGGCTAAATGTAGACAAGAGTCTGGAGTGTATTATCCAGCGGGTGGACAAACTCCTTCAGAAGGACCGTCTGCCTGCCGACAGCAGCCAGGGGGACACTACCCCAGGCCACCAGCAGGGCGGCAGCAGTAAGAAAGGTAACCAGAGTACCAGGGCATTCTGGATCAACCCTGAATGCATGACCCAGGAGGAGCCTTCATCATCACTACCTTcccccccatcatcatcatcctccctcCTGCCTGCTCTCACCCTGAATCTGACTCATGCATGCCCACCCAGCCCTGACAAAAACCCATATGGCAGCCCCAGTGGCGAGGAGGCTTTCCCAGGGGAGTGGAGCGAGGCCCTGTACCCTCTCCTCACCACGCTGACCGAGTGTGTGGCTATGATGAGTGACAAGGCTAAGAGCTCCATGGTGTTCCTGTTGATGCAGGACAGTGCTCCTACCATCGCCATGGACCTCTCCCTGCAGTACAGACGAGACGTGGTCTTCTGCCAGACGCTCACTGCCCTCATCTGTGGCTTCATCATCAAGCTGAGGAACTGTCTCCGTGACGATGGCTTCCTCAGGCAGCTCTACACCATTGGCCTGCTGGCCCAGTTTGAGTCTCTGCTCAGCACCTACGGCGAGGAGCTGTCCATGTTGGAGGACATGTCGGTTGGCATCATGGACCTACGGAACGTTACCTTCAAGGTGACCCAGGCAACCTCCAGCTCCTCCCCCGACATGCTGCCGGTCATCACTGGCAACCGGGACGGCTTCAACGTCCGCATCCCGTTGCCGGAGACCATGTTTGACGCGTTGCCGAGGGAGATCCAGAACGGCATGCTGCTGCGCGTCCAGCCGGTGCTCTTTAACGTGGGAATCAACGAACAGCAGACGCTGGCAGAGAAGTTTGGAGACACGTCTCTGCAGGAGATCATTAACCTAGAGAGTCTGGCCAGACTCAACTCCTACTATCAACAGTTCAAGGAGGTCCTACCTGAGGACTGCCTGCCCAGGTCCCGTTCCCAGACGTGTCTACCAGAGCTGCTGAGGTTCCTGGGACAGAACGTCCACGCCAGGAAGAACAAGAACGTAGACATCCTGTGGCAGGCAGCAGAGATCTGTCGTCGTCTGAACGGTGTGCGTTTCACCAGCTGTAAGAGTGCTAAGGACCGCACGGCCATGTCCGTCACCCTGGAGCAGTGTCTGATCCTACAGCACGAACATGGCATGGCCCCACAGGTCTTCTCCCAGGCCCTCGACTGCATGCGCAGCATTGGGACCAGGGAGGGGGTCACCCAGAAGAACCTGAGTGGCCTGTTGCCTGTGCGGGATTTCAGGCTGGACCCCAGCCTGCTGTACTCCCTGCCCCTGCTGGCCCTCAGCCCCAACCTGCTGGTCGTCTGGCTGTTCCTCAGCGTCGCCTACTTCCTGGCCAAGCTCCGCTGCAGCTGAAGGCACAGCCCCTCTGCCACCCAGCCCCACCTACTCTCGACCTCTACTCACCTCTTCTCTCTGCCCGTTCCCCccagtgtgtcagtcagtcagtcagtcagtcggtcaggaAGAAAGGCAAAAAGTTAGTTTGTCAGTCAAGATGGAAGACAGGGAGTCAGTcgctctgtcagtctgtctggagctCAGCCGGGAGAACCCTCTGATTGGCCGAGGGCAGACCGTGTGTACCTGACTGGACTTTATGTGCGTCACTCGGCTAAACTGCCAGCTGTTCCACCTAATGGGCAGCGAGCACTCCTCCTGCCCTGCTCTCTGTCCTAACCAATCCAGTCAGAGCAGGAGGCTGGTCTAAAGGTCTATGTGCAGTACTGTATGAGACTGTTACTGTCAATGTCCTGACATATTTCTCAGTTTAACACCCATTGTTTTACAACAATCAAAAACAGAGTATGGAGAGAAACTTTGTGAAATATAGCCGGTAAGAAGTTTTAGCTGAATTTAATGGAAGTTTTGTCCCAGTTGTCCTTGAGTATTTATAATGCCGCTTCCCAACTCATGACATGACTATAACCATGCTATTATGATGATATGATGCCATGGATCCTTTGGTTTTGCACAGAGCTTATTTTCAGTCATGCAAATGTTCTGGCTTGCTTGACGTTTACGTCTTCCATAAGGTTTGCATACAGCATAAGCCAAGGGATGGCTTGGCCATGCAATATCAAGCTGATGTTGTTTTGATCTGGTGgccattttgttgttgttcctcAGGCCTTCCTACTCTTACAGCAGGAGAGACTTGTGTCCACTTTCACTTTAAGCCAATGCACTTTTGTATCAACGTTGTCATCTTAATGAAGGTTATCCGCTTGTCTTGCCAATTGACACAGTTTCATCTTGGTCGGAGCAATTTGAATTGGCCAATTCTGGGAATGTATGATATTTCAGGGGAGCTTTGTTGGCTTGTTTGATTATGCAGTGTAGTTTTTccaaagtgtttattttttagTTGATATAAGATTTCATGTCTGTACCAAGTTTCCTATTTACTATAGAGTTTGTATATATGAATTGGTTCTTTGTTTGAGAACCTATATGGGTTGCAGTTCTAGGGAAATGACAGAGAAGATGAAAAGAATGTACATGGGCGAACCTCAAATGGCTCCCTACCACCAAATGATGCACTACCTCTGaccagtagtgcactaaatatagGGGATGatttgagacacagcccatgctTGTTGTGCCAAATGTTTTAGCCAGGTCTCAGATGGTAGATACAGGTCTTGGATCTGTATTCCAGGTCAAAGTATTACTTCCAGATCTCCCAGCAGCCCAAATCCATCCCGCTTCCACAGAGAAGTGCCCTAGAAAGGGAGATTTGATATCAGACTCTTTGGGTTACTTCCAAGCCTTGCACTCTGGACTTCCTGGTCTCTGCCGAGAGAGTCCACGCACCATTATCATATACAGTAGTTGCTATCTAGTCCCATAAAAACATGATTAGCCATGTAATGGTATATGCACTCATTAATATGTAGACTAATGGTATTATCGTTTTCCAGCCCCATAGCCTCTCTCCGTTTGAATCAGTATAATACCTGTCTTCAGTGCTGTGTTACGTCCCAAGACGGCCACACTCAATCCAATCTAAAGTGACCTATTAAAGAAATGGACCATCCGTCCCAAAATAGCCTCCCCTGTGAGATTGTCACGCTTGTCTTACATCCCCTCCACCCCTCATTTCCAACTCCTCGACCCCCACAATGGAAAACTGGAGGGATTATTTTGTCCTTGTTGGTTGAGCTTTATGCAAGCTTCTTAAAGGCCTCTCACCTGTGTGACTGGTATGAGAGCTAGGCTGGGTTTAATGGTGTATTTATGTTAGTTCATTGGTTTGGTTTTGAATATTCAGAGGTTTATTATTTTTACTGATTTTGTGCAATGTTACTGTTTTACATTATCAACAAATACGTACATGCAGTATTTATTTCtcagtattctacagtatttacTTTTTCAATCTTGTAAATCCATATTGTAAATAATAGAAATGTATAAAATCAGATCATCTATTGATAAGTATGCTGGTGTAGAACTACCTCTATTGTCCCATGAAAACACCATCTGACTGAAAGCCAGGGGAGAGAGCCGAGGGACGGAGAGTCGAGGGACAGCCAGGGGAGAGAGCCGAGGGACAGCCAGGGGAGAGAGCCGAGGGACAGCCAGGGGGGAGAGCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1742562 lncRNA downstream 81477 16935056 ~ 16935318 (-) True G1521992
TU1742556 lncRNA downstream 89800 16926648 ~ 16926995 (-) True G1521986
TU1742555 lncRNA downstream 90694 16925898 ~ 16926101 (-) True G1521985
TU1742551 lncRNA downstream 102561 16913908 ~ 16914234 (-) True G1521981
TU1742550 lncRNA downstream 102951 16913518 ~ 16913844 (-) True G1521980
TU1742648 lncRNA upstream 121010 17174491 ~ 17174758 (-) True G1522068
TU1742669 lncRNA upstream 147872 17201353 ~ 17201646 (-) True G1522089
TU1742670 lncRNA upstream 149730 17203211 ~ 17203910 (-) True G1522090
TU1742680 lncRNA upstream 161895 17215376 ~ 17215874 (-) True G1522100
TU1742688 lncRNA upstream 170271 17223752 ~ 17223989 (-) True G1522108
XR_005037335.1 mRNA downstream 5036 17009383 ~ 17011759 (-) False LOC118941063
XM_021571066.2 mRNA downstream 44405 16971053 ~ 16972390 (-) True LOC110495687
XM_036952050.1 mRNA downstream 46880 16947767 ~ 16969915 (-) False LOC110495685
XM_036952076.1 mRNA upstream 522771 17576252 ~ 17591762 (-) False LOC110527367
XM_036952075.1 mRNA upstream 522771 17576252 ~ 17592356 (-) True LOC110527367
trnae-uuc-58 mRNA upstream 568045 17621526 ~ 17621597 (-) True trnae-uuc-58
trnae-uuc-59 mRNA upstream 570018 17623499 ~ 17623570 (-) True trnae-uuc-59
LOC110527378 mRNA upstream 577391 17630872 ~ 17633564 (-) True LOC110527378
TU1742514 other downstream 5417 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 74201 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 597877 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 931829 16055128 ~ 16084966 (-) True G1521546
TU1742044 other downstream 992441 16022606 ~ 16024354 (-) True LOC110495656
TU1743542 other upstream 388178 17441659 ~ 17450178 (-) True G1522794
TU1743656 other upstream 588937 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 634449 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 688486 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 998499 18051980 ~ 18053825 (-) False LOC118941107

Expression Profile