RNA id: LOC110527378


Basic Information

Item Value
RNA id LOC110527378
length 1604
RNA type mRNA
GC content 0.52
exon number 8
gene id LOC110527378
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17630872 ~ 17633564 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCTTTCCCCGAGATATAGACAGTCGGTTCCAAAGAGGAAGACCGACAAAATGGTCCAGCTACTGAAAGAGGAACAAGCACAGATCACCCAAAGAATCGAGTCATTGAGAAAAGATTTGATCCAGACACTAGTACCCAGTGATCCACACGACACCAGTAATGTCCTTCTGGAGGTGGTAACAGGGCGGACAACAGGAGGTGACATCTGTCAACAGTTCACCAGAGAGATGTTTGACATGTACCAAGGCCTTGCCAGCCACAAGACCTGGGACTTTGAGATCTTCAACTACACACCTGCTGAATATGGTGGACTGCACCATGTGGCGTCTGAAGCATGAGGGAGGGACACACCGGGTCCAGAGGATCCCCGAGTTGGGCCTGTCCTCCAGGATGCAACGCATTCACACAGGAACCATGACCGTCATCGTCCTGCCACAACCCAACGAGCTGGACATCAGCATTGACCCTAAGGACCTGCGGGTTGATACGTTCAGATCGAGAGGGGCGGGAGGTCAAAGTGTCAACACAACGGACAGTGCTGTCCGAATAGTACACCTGCCAACAGGTACGGTGGCAGAGTGTCAGACGTCCCGCTCTCAGCTGCAGAATCATGACACGGCCCTGTGCGTGCTGAAGGCCCGCCTCTACCAGAGCATGATGGGCAGAGAGACGGAGCAGAGACTTACGGCACGCAAACAGCAGGTGGGCACTCGCTCCCAGTCGGAGAGGATTCGCACCTACAACTTCAGCCAGGATGAgccagcgatgagacaaggagatccccccccgaccaatccctccctaacccggacgacgctaggccaattgtgcgtcgcccccacggacctcccggtcgcggccggttacgacagagcctgggcgcgaacccagggactctgatggcacagctggcgctgcagtacagcgcccttaaccactacgccacccgggaggcctcaacCCAGCTCTTTAATCAGTCTCAGACATAAACCCAATTACACCCTAGCAGCTTAATAAAGTCCTAAAACTTGACTGAAAATAGTTGGTGACGAGCCCTGCTCCTATTGGGTGTGTCAGAGCTATGTTTCAGCCCAACACACACGCTCTAATCTCAAGCACCCAGGCTGTCTGGCAGCTGGCCAGCCATGGCATCAGTATCTCTCCTACACAGCCATAGCAATGAGCATGTGTTGGCACCAGTGAAGGGTTGAATTACCTTCGAGGCTACTCGAGCCCCTGTGAAATGTTGGAGCTTCTCTGACAGAAGTCTGCTAAATAAATCCGTGGAAGACTATTGATTATTAAAGGCTGATGGACTAAAGGAAGACGCATTGAGAAAATGTCCACACCAGCAGAATATATTCAAGTACAATATTTCATCAAATCATACTGTAGAAAACTCTCTTTGCATTCTCCTTCTCACATACTCCAACCATGCTGGAGTACGGTCAAGGTCTGGGTCTCCCCAAAGCATCGTAGCACTAGGATGTTAATTCCATTGAAACTAAATAGACAAAAGATGGCCGTAGTGCTACGATGGTTTTGGGAGACCCAGGCATGAGCATGTACTGGTGGTGATGTGGAAAATAACCACCACCACAGT

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743662 lncRNA downstream 7861 17622709 ~ 17623011 (-) True G1522896
TU1743578 lncRNA downstream 81549 17537512 ~ 17549323 (-) True G1522824
TU1743604 lncRNA downstream 86154 17542028 ~ 17544718 (-) True G1522849
TU1743592 lncRNA downstream 88211 17517224 ~ 17542661 (-) True G1522838
TU1743668 lncRNA upstream 4533 17638097 ~ 17638315 (-) True G1522902
TU1743655 lncRNA upstream 7310 17640874 ~ 17642338 (-) False LOC110528763
TU1743671 lncRNA upstream 14412 17647976 ~ 17649289 (-) True G1522905
TU1743658 lncRNA upstream 37237 17670801 ~ 17671929 (-) True LOC110528763
TU1743617 lncRNA upstream 51234 17684798 ~ 17685352 (-) True G1522860
trnae-uuc-59 mRNA downstream 7302 17623499 ~ 17623570 (-) True trnae-uuc-59
trnae-uuc-58 mRNA downstream 9275 17621526 ~ 17621597 (-) True trnae-uuc-58
XM_036952075.1 mRNA downstream 38516 17576252 ~ 17592356 (-) True LOC110527367
XM_036952076.1 mRNA downstream 39110 17576252 ~ 17591762 (-) False LOC110527367
XM_036952062.1 mRNA downstream 577391 17016796 ~ 17053481 (-) False LOC110495689
XM_036952081.1 mRNA upstream 7803 17641367 ~ 17671930 (-) False LOC110528763
XM_036952082.1 mRNA upstream 7803 17641367 ~ 17671930 (-) False LOC110528763
XM_021608602.2 mRNA upstream 41643 17675207 ~ 17684566 (-) False LOC110527371
XM_021608603.2 mRNA upstream 41643 17675207 ~ 17684594 (-) True LOC110527371
XM_036952083.1 mRNA upstream 51987 17685551 ~ 17702827 (-) False LOC118941106
TU1743542 other downstream 180694 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 619494 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 688278 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 1211954 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 1545906 16055128 ~ 16084966 (-) True G1521546
TU1743656 other upstream 8854 17642418 ~ 17669959 (-) False LOC110528763
TU1743609 other upstream 54366 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 108403 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 418416 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 418416 18051980 ~ 18053825 (-) False LOC118941107

Expression Profile