RNA id: XM_036952082.1


Basic Information

Item Value
RNA id XM_036952082.1
length 3522
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110528763
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17640874 ~ 17671930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCAGATTCACCACGAGGAGTGTTGTCACCATGAGAGACTGTTGGAAGGATCGCCACGTTATTcactctgtcggtctgtctctctgccagtctgtgtgtgtctctgccagtctgtgtgtgtgtctctgccagtCTCTGTGTGTTGATCCGTAAAGAACATTGTGGAGTGTGGACCATGAAGCCGAATTGGATTTTACATCCAAATCAGCAGAAACAGACAGAAGAGGAACTTGGGACGGGAGGAGCGTGATAGCTGGTGATCTCTGATGAAAACGAGCAGCAATAACAGGACCCAACCAACCACTCTCACTGAGGAAACGATTAACCTGTCGTGGTTTATTGACCTGAACGGACATCTGAAGAATATTCAAATGGACCTCCCTTAATAAAGGGAGGTGTTCAGGACCTGATAGAAACTGGTCAGCACCAAAACAGAATCTGTTACTGGAGTAACTGGTCAGTACTGAAACAGAATCTGTTCGTGGGGAAACTGGTCAGTACTGAAACAGAATCTGTTCGTGGGGAAACTGGTCAGTACTGAAACAGAATCTGTTCGTGGGGAAACTGGTCAGTACTGAAACAGAATCTGTTCGTGGGGAAACTGGTCAGTACTGAATCATCTTACAGAGGAACCTTCATCACCAAAAACATCATTTCTTACTGAAGAAAGTGTTCAGCATGGAACATGTCTCACTGAAGAAAGTGTTCAGTACCAAAACAACTCCCTGAGGAAACTGTTACAAACCAATATATCTCTTACGGAAGACAGTTCAGTCCCAGCGAGCTGAGGGGAGTCAGGATGTTCGGTCCCCAGACGACATTAAACCCAGATTGGATTTGGCTTCGCGTCTCAttgtggagtggaggagagaagaggtttCTATTTGTGCTGATAGTGTGTGATCGATAGAGAGAGGACGTCATCGTGAGATGGCTGATAATTCATCAACGCCAGCATTTatagaaatacagaaatatgtcaAATAATAACAATGTCTCATCAATGTAATCAATCATCAATGAACAGACAGTGGACTTAAGATAAAGGTGTGGATTCAGGAGAATGAAAGTCACTAGTTTGGATGTCATATTCAGGGGAGCACAAGTTGTACAGAGAGGATAAGGGAGGACAAGTCTCAGACCCTGGCAAGAACATAGACACTCTTCCTGTATTGATTGAGATTGAGTGATTTGCGCAACATGCAAGCGCAACAGGTTAGGTTTGGGCATGCTAGCGattggttagggtaaggttaggtttGGGCATGCTAGCGattggttagggtaaggttaggtttGGGCATGCTAGCGattggttagggtaaggttaggtttGGGCATGCTAGCGattggttagggtaaggttagctTTGGGCATGCTAGCGattggttagggtaaggttagctTTGGGCATGCTAGTGattggttagggtaaggttagctTTGGGCATGCTAGCGattggttagggtaaggttagctTTGGGCATGCTAGCGattggttagggtaaggttagctTTGGGCATGCTAGCGattggttagggtaaggttagctTTGGGCATGCTAGCGattggttagggtaaggttagctTTGGGCATGCTAGCAAAGTGGTCAAGGTTCAAGATAAGGTTTGTAAACAAAAACACGCCAAAACAACACACCTGGATCCAAACCGCATTACAGTCCTGGATTCAAAGTCCTGCACACTACGACCTCTGCCACCCTGTTTCCACTAACAGGCTGGGCCAATCGGAATGGACTGGGATCTTTGAATGCCCAGACACTGATTGAGACGGTCCATGCACTGGCTATTCCAACTCAACTGTAAGCTAACATAACCAGCGACGCAGACTTCAAATGGACACTATGATGTTGTGTGTAACTGGTTTGAGGAGTGTGAGGTGGACGGCTCGGCCTGGTCAGAggagtgtgtgcacgtgtgtgacgCAGGTGGTTCTGATGTGTCTGActgtcctgtcttcctgtctgtccgtCTGGGCTGAAGACCAGATCATCTTcgaccaccatgctgtctactGGAACAGCACGAACCCCAGGTTCCACCATGACTACAGGGTTGCGGTCAATATAAATGACTACCTCGACATCTACTGTCCATTCTACACCAACGGCCCTCCGGCTCACGGTCGAATGGAACGCTATATCCTGTTCATGGTCAACCATGAGGGGTACACCTCCTGTCAACACAGGATGAGGGGGTTCAAACGCTGGGAGTGCAACCGTCCTACCGGTCCTGACGGTCCCCTGCGCTTCTCAGAAAAGTTCCAGCTGTTTACGCCTTTCTCCCTGGGCTTCGAGTTCAGGCCAGGACACGAATACTACTATATCTcaTCTCCTCATCCCAACCATGTAGGGAGGCCATGTCTGAGGCTGAAGGTGTATGTCAGACCCCCAGgCAGTTCAGGGTTTGACTCTCCAGAGCCCTTTCTGACTGATGGAGCTGCAGACTGGAGCCCAAAGTCCCTGCTAGCCCCAGCCCTAATGCCCAGCCTGGCCTCACTGctactgggcttcctctcatcgcTGTGACCCCCCTCCACTGGAGCAAGACCTAGACCAGTCTTTGCTGGAAGACTGCCTGTAGGACTGGCTGGCTGTCCCTCAAACACCCACACGCTCAGGGAGAAACTCTCTTTCAGTCCTGGATTAAAAACCACTGTGGGTCCCCAGGACAAGCATTTACAGCTCCTGGGCTAATTCATGGATGAAGAGCCCCtagtctaaacttaaccctaacccccctggGGTGTCTGAAGGAACATGGATGGATGGGTTGGGGGGGGGTAGTTGGctggacacacacatgcatgaccACTGTGAATCTGGACTGAACTGACAGTTTCTGTTATGTTTACATGATCACATATAATTTAACTGAAGATGGTTCCACTGATGTCATGGTTATATTTGAAATGGACACTTAATTAGACTTCCAAAGTGCAGATTCGGATCTGACACTCAGAAGCCTTCTGATGGACATAGTTACTGCTGCAACCCCCAGCccacagagggaagaggagaaggagggggagagaaataaacaaagaaaaggagagagaaagaaagagagtctCGGGACCGAGACTTCTTTAAGAGACTTCTTTAATGTCGGGAGGAGAACATAATGAGAAGGCactgtgttcacacacacacacagacaaacaagaACACTGACACGTTTCTACCCTGTTTCATCTTATTTTTGTTCCGTTTAAAAGCACCATCAAAtattcatgagagagagagagaggagagagagacagagagagagagagagagagagagagagagagagagagagagagagacagagacagagagggaccgcTAGATGGAAAGAGAAAGCAGTGTAAATCCATCCTAACCCTGTGGTTTTGTTGAGGTCGTGTTGTGGCAGTGTTTtaaccatgttgttgtgttgcggTCTAGGTTgcggtctagagagagagagaggagagagagacagagagagagagagagagacagagatagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743668 lncRNA downstream 3052 17638097 ~ 17638315 (-) True G1522902
TU1743662 lncRNA downstream 18356 17622709 ~ 17623011 (-) True G1522896
TU1743578 lncRNA downstream 92044 17537512 ~ 17549323 (-) True G1522824
TU1743617 lncRNA upstream 12868 17684798 ~ 17685352 (-) True G1522860
TU1743607 lncRNA upstream 13635 17685565 ~ 17687702 (-) False LOC118941106
TU1743608 lncRNA upstream 13635 17685565 ~ 17687702 (-) False LOC118941106
TU1743711 lncRNA upstream 63653 17735583 ~ 17735789 (-) True G1522931
TU1743714 lncRNA upstream 76625 17748555 ~ 17748797 (-) True G1522934
LOC110527378 mRNA downstream 7803 17630872 ~ 17633564 (-) True LOC110527378
trnae-uuc-59 mRNA downstream 17797 17623499 ~ 17623570 (-) True trnae-uuc-59
trnae-uuc-58 mRNA downstream 19770 17621526 ~ 17621597 (-) True trnae-uuc-58
XM_036952075.1 mRNA downstream 49011 17576252 ~ 17592356 (-) True LOC110527367
XM_036952076.1 mRNA downstream 49605 17576252 ~ 17591762 (-) False LOC110527367
XM_021608602.2 mRNA upstream 3277 17675207 ~ 17684566 (-) False LOC110527371
XM_021608603.2 mRNA upstream 3277 17675207 ~ 17684594 (-) True LOC110527371
XM_036952083.1 mRNA upstream 13621 17685551 ~ 17702827 (-) False LOC118941106
XM_036952085.1 mRNA upstream 47574 17719504 ~ 17815003 (-) False LOC110510546
XM_036952087.1 mRNA upstream 170437 17842367 ~ 17861625 (-) False LOC110527386
TU1743542 other downstream 191189 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 629989 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 698773 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 1222449 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 1556401 16055128 ~ 16084966 (-) True G1521546
TU1743609 other upstream 16000 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 70037 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 380050 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 380050 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 380050 18051980 ~ 18053825 (-) False LOC118941107

Expression Profile