RNA id: TU1743656


Basic Information

Item Value
RNA id TU1743656
length 537
RNA type TUCP
GC content 0.54
exon number 4
gene id LOC110528763
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17640874 ~ 17671930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcacgtgtgtgacgCAGGTGGTTCTGATGTGTCTGActgtcctgtcttcctgtctgtccgtCTGGGCTGAAGACCAGATCATCTTcgaccaccatgctgtctactGGAACAGCACGAACCCCAGGTTCCACCATGACTACAGGGTTGCGGTCAATATAAATGACTACCTCGACATCTACTGTCCATTCTACACCAACGGCCCTCCGGCTCACGGTCGAATGGAACGCTATATCCTGTTCATGGTCAACCATGAGGGGTACACCTCCTGTCAACACAGGATGAGGGGGTTCAAACGCTGGGAGTGCAACCGTCCTACCGGTCCTGACGGTCCCCTGCGCTTCTCAGAAAAGTTCCAGCTGTTTACGCCTTTCTCCCTGGGCTTCGAGTTCAGGCCAGGACACGAATACTACTATATCTcaTCTCCTCATCCCAACCATGTAGGGAGGCCATGTCTGAGGCTGAAGGTGTATGTCAGACCCCCAGgCAGTTCAGGGTTTGACTCTCCAGAGCCCTTTCTGACTGATGGAGCTGCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743655 lncRNA downstream 80 17640874 ~ 17642338 (-) False LOC110528763
TU1743668 lncRNA downstream 4103 17638097 ~ 17638315 (-) True G1522902
TU1743662 lncRNA downstream 19407 17622709 ~ 17623011 (-) True G1522896
TU1743578 lncRNA downstream 93095 17537512 ~ 17549323 (-) True G1522824
TU1743604 lncRNA downstream 97700 17542028 ~ 17544718 (-) True G1522849
TU1743658 lncRNA upstream 842 17670801 ~ 17671929 (-) True LOC110528763
TU1743617 lncRNA upstream 14839 17684798 ~ 17685352 (-) True G1522860
TU1743607 lncRNA upstream 15606 17685565 ~ 17687702 (-) False LOC118941106
TU1743608 lncRNA upstream 15606 17685565 ~ 17687702 (-) False LOC118941106
TU1743711 lncRNA upstream 65624 17735583 ~ 17735789 (-) True G1522931
LOC110527378 mRNA downstream 8854 17630872 ~ 17633564 (-) True LOC110527378
trnae-uuc-59 mRNA downstream 18848 17623499 ~ 17623570 (-) True trnae-uuc-59
trnae-uuc-58 mRNA downstream 20821 17621526 ~ 17621597 (-) True trnae-uuc-58
XM_036952075.1 mRNA downstream 50062 17576252 ~ 17592356 (-) True LOC110527367
XM_036952076.1 mRNA downstream 50656 17576252 ~ 17591762 (-) False LOC110527367
XM_021608602.2 mRNA upstream 5248 17675207 ~ 17684566 (-) False LOC110527371
XM_021608603.2 mRNA upstream 5248 17675207 ~ 17684594 (-) True LOC110527371
XM_036952083.1 mRNA upstream 15592 17685551 ~ 17702827 (-) False LOC118941106
XM_036952085.1 mRNA upstream 49545 17719504 ~ 17815003 (-) False LOC110510546
XM_036952087.1 mRNA upstream 172408 17842367 ~ 17861625 (-) False LOC110527386
TU1743542 other downstream 192240 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 631040 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 699824 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 1223500 16418250 ~ 16418918 (-) True G1521712
TU1742040 other downstream 1557452 16055128 ~ 16084966 (-) True G1521546
TU1743609 other upstream 17971 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 72008 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 382021 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 382021 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 382021 18051980 ~ 18053825 (-) False LOC118941107

Expression Profile