RNA id: TCONS_00049236


Basic Information

Item Value
RNA id TCONS_00049236
length 2901
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id XLOC_024093
representative True

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 22491993 ~ 22497122 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttttacctctcttCAGGGAACAACTCTGCCTCAAAGTCTGTGGACCCCACTTCCGTGAACCCCAGCTCTGTGTACGTGCACCCCACCTCTACCTCTTTGGACCCTAACTCTGTCTCTGTGCACCCCATCTCCGCCTCTCCGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCATCTCCGCCTCTCCGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCGCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCACATCCTCCTCTCTGGACCCTAACTCTGTCTCTGTGCACCCCATCTCCGCCTCTCCGGACCCTAACTCTGTCTCTGTGCACCCCACCTCCTCCTCTCTGGCCCCTAACTCTGTGTCTGTCAACCACACCTCCGCCTCTCTGGACCTCACCTCCGCCTCTCTGGATCCCACCCCCACCTCTCTGGACCCCACCTCTGTGTCTTTGAATCCCACCTCTGCCTCTCTGGATCCCACCTCCACCTCTCTGGACCCCACTTCTGTGTTTGTGAACCTCACCTCAGTGTCTGTGAACCCCACCCCCACGTCCGTCTTCTTAGACCCCACCTCCATCAACCCAACCTCCGCCGCTGTTACATgccaattaaaaaagaaaaggaacCAAACACATAGTGGTaattctattgttttacattttttgtaatttttaaactACACTGCACTTTTTAACGCTTTGCGTCTTAAGATTAAGTTtatatttaagtaaataataataattttagaaagGTTAACCCGTTTTGTTACTTTTTAagtttgttgtaaataatgtttctaTTACATTACAGAATGCTCACATAAAAGCCAGGACGTGTACAATGGAGTGGttgtgagagagagagttagGGAGGTTGGTcagaataatgaaaaaaaatggaagaaaattATTCCTCTTTAAAATTTACAAATGTGTTATGTTACACATTAATTATTACAGTAAAACAGTAAGTTAATAGTACAGTAAATTGCTCAACTATATTATTGTTAGTTGAAGAGAGTCAGTAACATAAATTAGGTTCTTTATGCTGTTTAACTTGAAAATGTAATGATGTAAATTAGGTCCTGatgcatttttttctgtgtgttcttTTAAGGGAAGAAAAGAATTTCTGTTTAGGTGGCAGCCCTGTGCATCCTGGTAAGTAGAGACATATTTAGTATTTAATGTAACCTTACTCTTCTCCTAAGAGAACAAAAAATTTGTTGATGTTTAAAGAATTAtcgaataaaattaaatactggtcattaatataacattaatagtGTACAaggttttcaaaaattaaaaacaaacaaattgtgtgtgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatttaataaatatatttatttatatacttacatacatatatatatatatacttacatacatacatatacatatatatacatatatatttatatatatatacatacatacatacatacatacatatatatatatatatatatatatatatatatatgtccgtgtgtgtgtatgtatatgtatgtatctttttttttattacatttttgtgttAAATGGTAGAAATTCACATGATTTTACCATTTGTACCTTTTTCAACTGGTAATAAAGGCCCACTCTgtaaattagttattttaaattagttacaatttatttatttaaatcgtAGGTCATCACTTTCAGCAAAACTGCCAAGTTCTCTGGTATATATGCggcagatgcccatccagctgcgaCACAGCTCTGCAAGCTGCCCTTGCTTGTTATCATTGTCatacaaaattaatttatttcttttttatgtttttatttatttattaacattacttATATGTATCCATGTATCTAATTTATCTGTACTATTCCAAATATCAATGAAATACTAATTGTAGTTCCTAATTcatatacataatatattactgtacatataaaaaattacatataaaaatagTGACAACAAAGTTTTTACCGGATACTGTAGCTTGCAATCTCATacaaaaaagtgatgttttgcaagCCATTGCAGCATATGTAATGTTGTTTAAATTTCAAGCAAAGTTAACAGTTAATTTTACTGTAGTACAAGAATTTATTTAAGTATAAACAGATTAACAGCGCTGTACAAAATCATATTTGAGTATTTTACTTATTTGACTGACAGAATTATAGTTATATAGAATCAATTAGATAAAAAAGGTTTTGTGTGTCTGGATGAAATTTtgatgctttacacacacacacacacacacacacacacacacacacacacagacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacttttccaaaaaggaaaataaatagtgttaaaaaaatGCTGTCTGTATTTTTCGTTCATAGCGGCAAGAAGTGGAGGAGCACATGGGTGTCTGAGGATGCTGTACAGTAGTGGTG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051153 regulation of striated muscle cell differentiation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00047795 lncRNA upstream 2358 22489689 ~ 22491864 (+) True XLOC_024092
TCONS_00047783 lncRNA upstream 360920 22131858 ~ 22133302 (+) True XLOC_024086
TCONS_00049234 lncRNA upstream 994326 21498287 ~ 21499896 (+) False XLOC_024080
TCONS_00049235 lncRNA upstream 994599 21498288 ~ 21499623 (+) True XLOC_024080
TCONS_00047774 lncRNA upstream 1149549 21324588 ~ 21344673 (+) True XLOC_024079
TCONS_00049237 lncRNA downstream 479467 22976589 ~ 22980625 (+) True XLOC_024098
TCONS_00047809 lncRNA downstream 567505 23064627 ~ 23107533 (+) False XLOC_024099
TCONS_00047810 lncRNA downstream 567505 23064627 ~ 23112585 (+) False XLOC_024099
TCONS_00049238 lncRNA downstream 567532 23064654 ~ 23112504 (+) False XLOC_024099
TCONS_00049239 lncRNA downstream 567594 23064716 ~ 23111134 (+) False XLOC_024099
TCONS_00047792 mRNA upstream 158939 22319942 ~ 22335283 (+) False XLOC_024091
TCONS_00047794 mRNA upstream 159487 22320738 ~ 22334735 (+) True XLOC_024091
TCONS_00047793 mRNA upstream 167633 22319958 ~ 22326589 (+) False XLOC_024091
TCONS_00047791 mRNA upstream 167697 22319942 ~ 22326525 (+) False XLOC_024091
TCONS_00047790 mRNA upstream 167725 22319940 ~ 22326497 (+) False XLOC_024091
TCONS_00047796 mRNA downstream 74353 22571475 ~ 22634041 (+) False XLOC_024094
TCONS_00047797 mRNA downstream 75174 22572296 ~ 22634198 (+) False XLOC_024094
TCONS_00047799 mRNA downstream 90184 22587306 ~ 22634675 (+) True XLOC_024094
TCONS_00047800 mRNA downstream 146832 22643954 ~ 22700975 (+) False XLOC_024095
TCONS_00047801 mRNA downstream 146832 22643954 ~ 22704233 (+) False XLOC_024095
TCONS_00047785 other upstream 255230 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047756 other upstream 1890210 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047755 other upstream 1901625 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047732 other upstream 2719547 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047707 other upstream 3001602 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047798 other downstream 90174 22587296 ~ 22594781 (+) False XLOC_024094
TCONS_00047805 other downstream 233285 22730407 ~ 22849186 (+) False XLOC_024096
TCONS_00047842 other downstream 1049457 23546579 ~ 23546696 (+) True XLOC_024119
TCONS_00047848 other downstream 1553926 24051048 ~ 24052227 (+) True XLOC_024124
TCONS_00047852 other downstream 1870854 24367976 ~ 24368090 (+) True XLOC_024129

Expression Profile

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