RNA id: XM_021608603.2


Basic Information

Item Value
RNA id XM_021608603.2
length 3461
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110527371
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17675207 ~ 17684594 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTGTATTCAGCCATTTTGTATGAAAATCAAGGAAACCTGCCGCCGCGCCAGAGACCTGTGGATTATATCGAACGATGGAAGGACACAAGTTAGATGCTGATCTGTATCCTATGGGACCTGGCTACGTCACAGATATAGAtgtcTCAGTGGGTACCAAGAGGGGATCTGATGAACTCTTCTCCTCCTACATCATGaccccagCCAACGGTAATGACAGTAAGAAGTTCAAAGGTGAGATGCGGAGCCCCAGCGCTCCATCGCGTGTCATCCACCTGCGCCAGCTGCCCGGGGACATCCAGGATTCTGAGGTCATCAGCATGGGAATGCCCTTTGGGAAGGTCACCAACCTTCTGATGATGAAGGGAAAGAACCAGgcgttCCTGGAGATGAACACTGTGGACCAGGCTCAGACCATGGTGAACTACTACGCTACGGTCACCCCCCTCATCAGACAGCAGCCTGTATTCATGCAGTACAGCAACCACAAGGAACTCAAGACCGACAACTCACCTAACCAAGTGagAGTCCAGGCAGCACTGCAGGCGGTGAATGCTGTCCAGGGTGGCACCATGTTGGGCTCTACCATGACCGGTATGGGGGGTGTAATGGGTGCTACCATGTCAgttggagggggagagatgggagccAGAGGCATGGCCACCCAGAGCCCTGTCCTTAGAGTCATAGTGGAAAACCTCTTCTACCCCGTCACACTGGAAGTCCTGCACCAGATCTTCTCCAAGTATGGGTCTGTTCTGAAGATCATCACCTTCACTAAGAACAACCAGTTCCAGGCTCTGGTCCAATACGCTGACCCCATGACGGCACAGCACACCAAAATGtctctaGACGGTCAGAACATCTATAACGGTTGCTGTACTCTGAGGGTGAGTTTCTCCAAGCTGACCAGCCTCAACGTGAAGTTTAACAACGATAAGAGCCGTGACTACACCAGACCTGACCTTTCTACTGGAGAGCAACACAACCCTCAGCCTGGAATGGACCAGCATGCGATGGCTGCTGCCGCCTTCGGGTCTCCAGGTCTGATCTCAGCATCTCCTTATGGACACGGATTCCCCCAGGCCTTCACTCTACAGCAGGCTGCAGGTTTGTCTATGCCCGGTGCCTTGGCGTCATTTGGTATGGGTCCAGGGGGCATGGCCGCTAGTCGTCTCGGCCTGCAAGCCCTCGGCGGTGGAGGAGGACAAGCTGGCGTCCTATTGGTCAGCAACCTCAACCCAGAGAGCGTTACACCAAACTGCCTCTTTATTCTCTTTGgTGTGTATGGCGACGTGATGAGAGTGAAGATTCTGTTCAATAAGAAGGACAACGCTCTGGTCCAGATGGCTGATGGCACACAGGCTCAGCTAgCGATGAGCCACCTGAACGGGGTGCGTCTCCATGGCCGGTCTCTACGTGTCTCCATGTCTAAACACACCACCGTACAGCTGCCCAGAGAAGGCCATGAGGACCAGGGGTTGACTAAGGACtatgccacctctcctctccaccgtTTTAAGAAGCCTGGCTCCAAAAACTACAACAACATCTACCCTCCCTCTGGCACACTGCACCTCTCCAACATacctccTGCAGTAGGGGAGGAGGATCTGAAGGCACTGTTCAGCAGTTCAGGAGCTTCAGTCACGGCTTTCAAGTTCTTCCAGAAGGACCGTAAGATGGCTCTGATCCAGATGAGCTCAGTGGAGGAAGCTGTTGAGAGTCTCATCGAGTTCCACAACCATGACCTGGGAGAGAACCACCACCTCAGAGTGTCTTTCTCCAAATCTACCATCTAacacaatcatacacacacaacacacacacacacacacacacacctgtaactACAGAGTACAGACCAAACCCGTTCATCAGAATGCCTTCCACGTCGTTTGTATGTCAAGTCTTATTCCACACGAGACACACTTAATCATTCctttatactttttaaaaagtttttatcattatttttacACAATTATTTACGTTTACTATGGATATAATCGGTTCATATTTTATTTTAGTAGTTCTACTTCTATGGAGGGAAACTCATAGAACTCTCCAAGATACACATCTAGTATTTCTGTTTCTACACTCTGCAGAATGCACATCTAGTATTTCTGTTTCTATACTCTTCAGAATGCACATCTAGTCTTTCTGTTTCTAGGttacaatgttttattttttccatttgatatactttaaaaaaaaatattccattgattaatgttttctgtttctacTGTCTGTCCTTGGGATCTTCACCACTAGTCATATTGCTCTAACAAAATGCCTTTCCGCAACAGTCTAGTGCCTTAACCAGACCAGCTGGCTAGCCTTTCCATGCTATTACATTGATTTTATAAGATTGGACTCTCAAATAGGCTTTTTCTTTGAACATCAATCACTTGATTTGAAATATATGGCTGTGGTCTTCCCTTTTGATTTCTAGGTGTACACTATGCATTCCATTGTATTTTTGTAACATTAGTAGTTCTATACTCTTATCATTTTCTATACCGTTTACTGTTTGATATCTACCAGTCACTGCGCATCAAGTCTTAATTCTTGCTTCAGGGGTGCCATTTAAAATCATGCAGCATTTAGTCTTTAGTGCCTACTTCACCCCTACTATTTTACACGCACACATGCAATACTCCAATTTTATTTCATACAGCCTTAGATATTTAGTGCCTACAACACAAACGTATTTATTACCTTTGTTCTGGCACTGACTGTCTATATATGGCTTTTGCTATAGATTCTTCTGTAGCATAAATTGCTTCATGTAGCTATTGATGGTTGATGTTATTGAGGACCAAAGTACCTACCACCCCTGCTACTTAAACGATCTGCGTCAGTGTAAAAGACCGTTCTAAACTCTCTGTTCTCCCATTGGTTTGATTCTATGGTCCAAATCGCCTTTAGGGATTTGATTTTGTTTTCATTTTATACCTAACCAGTCAGCCACTAGATTTAAAAATCATAATTTTGAGTGAGTTATACCTTGAATTTGTGATATTTGGTTTCTTGTCCCATTTCTTTTTAATTACAGTTAAATTCTTCTGTTGGTAGAGTACTTTAAGcatgaatatatactgtatgttgaccTAGTTGATGATATCACAGTGGATAGCTGTGAGGTAGTTCTGTATTCCTCTCCTGGTAACGGTTGTCGCTTTTATTTTCCATTATGGGTTTTATTGGGGTCCGGGATCAACAGGATGTGATGTCATGAAGCAGTGGGTAGGGTTTTTGTCTGTCTATATTTAGTGTTTTTGTACCACAGTGATTTGGATTAAAGATTCCATTTCATTCCAACATGTATATTTTGATATATAGTTAACAAACGTTGATTCCAACATGTATATTTTGCTATAAAGGTAATGCCAGCTTTCTCTGGAGGGCTGTAAAGATGAGTTTTGTATCACAAAGAAATTAAACTTAATGGAACACA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K13218 PTBP1, PTB; polypyrimidine tract-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743658 lncRNA downstream 3278 17670801 ~ 17671929 (-) True LOC110528763
TU1743671 lncRNA downstream 25918 17647976 ~ 17649289 (-) True G1522905
TU1743655 lncRNA downstream 32869 17640874 ~ 17642338 (-) False LOC110528763
TU1743668 lncRNA downstream 36892 17638097 ~ 17638315 (-) True G1522902
TU1743662 lncRNA downstream 52196 17622709 ~ 17623011 (-) True G1522896
TU1743617 lncRNA upstream 204 17684798 ~ 17685352 (-) True G1522860
TU1743607 lncRNA upstream 971 17685565 ~ 17687702 (-) False LOC118941106
TU1743608 lncRNA upstream 971 17685565 ~ 17687702 (-) False LOC118941106
TU1743711 lncRNA upstream 50989 17735583 ~ 17735789 (-) True G1522931
TU1743714 lncRNA upstream 63961 17748555 ~ 17748797 (-) True G1522934
XM_036952081.1 mRNA downstream 3277 17641367 ~ 17671930 (-) False LOC110528763
XM_036952082.1 mRNA downstream 3277 17641367 ~ 17671930 (-) False LOC110528763
LOC110527378 mRNA downstream 41643 17630872 ~ 17633564 (-) True LOC110527378
trnae-uuc-59 mRNA downstream 51637 17623499 ~ 17623570 (-) True trnae-uuc-59
trnae-uuc-58 mRNA downstream 53610 17621526 ~ 17621597 (-) True trnae-uuc-58
XM_036952083.1 mRNA upstream 957 17685551 ~ 17702827 (-) False LOC118941106
XM_036952085.1 mRNA upstream 34910 17719504 ~ 17815003 (-) False LOC110510546
XM_036952087.1 mRNA upstream 157773 17842367 ~ 17861625 (-) False LOC110527386
XM_036952088.1 mRNA upstream 157773 17842367 ~ 17861866 (-) True LOC110527386
XM_036951027.1 mRNA upstream 235491 17920085 ~ 17938168 (-) False LOC100135945
TU1743656 other downstream 5248 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 225029 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 663829 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 732613 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 1256289 16418250 ~ 16418918 (-) True G1521712
TU1743609 other upstream 3336 17687930 ~ 17702753 (-) True LOC118941106
TU1743613 other upstream 57373 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 367386 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 367386 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 367386 18051980 ~ 18053825 (-) False LOC118941107

Expression Profile