RNA id: XM_036952083.1


Basic Information

Item Value
RNA id XM_036952083.1
length 3348
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC118941106
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17685551 ~ 17702827 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tCTCTCActcgtcctctctccctcatcctctctccctccctgtgtttGGCGAGCTGGTGAGAGCACAAACCTTTCTGCAAAACAGGTCGCCTACAGGAGACAAGCATATCATAATTTTGAGGGAACCCGGAGAGCTTTCTTCTCTCCCAAACCCGCCAATTCACCCACGAACTCCTGTAATGTCGTGGATCGAAGATAAATAACCGACagcttgttctctctctgttgtagTGTTGAGCGACACGAGCTACCccgacacacgcatacacacacagctcGGGCGTTCCCGCGACTCCTCTGCGGCCAACGGAAGGGtgtcaggagagaggagagggagaacggaggaggcgaaggggagagaggaggggaggaaaccCGACTGTTTTGAAGCTATACGCCAGTAAACATAGACTATAAGCATACACAGTGAACGAAGAGGAAACCGTCGCAGTGCTATTTTATTTCAGTGTGGATGAAACTAGGATGAGAGAGACGCCAAAGGAGAGAGACGCCATCGGTGACAAGTTAAAGGACTCCGCTATTGGgatgGCTGAGGTTTCGCAGCAGGAGAGAATTCAGGCCATCGCTgagaagaggaagaggcagaCAGAGATCGAGAATAAGAGGAGACAGCTGGAAGATGACAGAAGACAGCTTCAACACctaaagtcgaaGGCTCTGAGAGAGCGCTGGTTGTTGGATGGGGCTCCAGAGGAAGATGAGACTCAGAGACGTATTCAGGAGGACGAAGAGAGGACTAAGGCACTAGAGAAGAGCATCCTCTGCCTGGAGCAGGAGATAGAGGAGCTGGAGAATCCGGTCGTGACcaaagagaacagaggagcTGTAAATGGAGTATCACAGAACCAGAGTCCTAGAAGAGAACTAACAGGAGTAGAAGCCAAGCTGTTGGGTCCCAGTCCAGACCAGGCCAGCGCTGAGAACCCTGTTACCCTGGTCTTCATGGGCTATACAGCTCTGGAGGGTGAGACAgcaggggaggtgggggaggcaggggggacAGAGGGTGGAGACGGCTCAGTCAAGGCGGAGTTTGTGATGCTACCAGACGGGGAGGTGAAGGGGgtaagagagggggagacagagacccAGGCAGCAGCCAATGGGAGTACAGGTgagaagggggaggcaggggggggaaatgggggaggaggggaggagggggagaaggagaagaaacagAGTTGCAAGTGTTGCACAGtcatgtgagtgtttgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagtttgtgtgtgtgtgtgtgtgtgtgtgagtgtgtcagaggaagagagacttGAGTGCGTACGTGTGTATGCGTGTCTGATCACACACTTATCAGGACTACAAAACCAAACAGTCCGACTCCTCCTGCCAAGCAGCAAAAACTACAGCCAACACCAACCATATACAGCCAACAGACACTGGAGAATCAGTACTACTTTGTATTACTGTAGTAGTACAACAACAACCTACAGCCAGGACAATATACAATAGACTATGTACTACTCTAGTACTACAATAACAATCTACTGCCAGGACAATACACACTAGACTATGTACTACTCTAGTACTACAATAACAATCTACAGCCAGGAAAATATACACTAGACTATGTACTACTCTAGTACTACAATAACAACCTACAGCCAGGACAATATACACTAGACTATGTACTACTCTAGTACTACAATAACAACCTACAGCCAGGACAATATACACTAGACTATGTACTACTCTAGTACTACAATAACAACCTACAGCCAGGACAATATACACTAGACTATGTACTACTCTAGTACTACAATAACAACCTACAGCCAGGACAATATACACTAGACTATGTACTACTCTAGTACTACAATAACAACCTACAGCCAGGACAATATACACTAGACTATGTACTACTCTAGTACTACAATATCAACCCACAGCCAGGACCATATACACAAGACTATGTACTACTCTAGTACTACAATAACAATCTACAGCCAGGACAATATACACTAGACTATGTACTACTCTAGTACTACAATAACAACCTACAGCCAGGACAATATACACTAGACTATGTACTACTCTAGTACTACAATAACAACGGGGAAatctgaaatggaaccctattccctatggtacTTTGGGCCAAAACACTCCCACAGTGCACTAGTATAGGAAAAGGGCTGCTGTTTCAGATACAGCTAGTACCTCCAGACTGATCAAACAAAACCTCCCTCACTGTGTACTGCTGTCGTACTACTCTTTACTACGATGTATTTCTTCTGATATGGATCATTATTTTATTGTGAATgctatttttatatttttctgtCTTGACATTTATAGTGTATTCTGTGTGTACTTCTGTATGCTATTCTATTAATATTCTCTTTATTATTGAACTGGATGTGCCGTCACGTTATTGTTGAAAAGAAAATGTAGCAGGTCTTTGTATTGTAATGTGTCTGCTATCGGAGCCATCTGGAAAATGTCTACCATTGTTTTTTTTAGTCCAGAATATGAAGAAGACATACATTTTGTATATTTCCCTGTGTATCGAGTATTTATGAGTCAGTTTCATATTATATTGTCTCTGTAATATAGTTTCACAGTGTGAACAGTAATCAAATATGTTGATATCAAGTTTTATACAATGTATTCATTGGTTTGGTTTCTGCCAAATCATAGCCAGCCACACTCCGCATGCAAGCTTGTACCATCATCACAAATCAATAGGAACACCAATTCAATCCATCAGCCACACCATGTCGTCTGGTACATCTCAGATAACATTATTATCTCTGTTTTAAACTGTCCATCCCATGTCGTCATCTATATCTCTTCATCTCAAGTCATTTATACTCTACTTACATCTAGTAATCTATTGATCTCTATTCATCTCTACTAATCTCCTCATTAGACTCACTATGACACTGTGCAACTCATAAACACATttcactattttattttttataaatgtaaaGGATGGCTGATTCACTGTTTGAGTCAAGCCCGGTGATTGTTTTAATGCTGATGCTTGTGAATTTTGTTTAGTCAGTGATGTTGAATCTTCTGATGTAGCATTAACTCTAACTCTGATTAGTGTTGTTATTGATCGTAATACTCCTCATCAGGTCTGATCAGTATCATTGACAACTATATCCATCATCACGGCAAATTGCTTAACATGAATGTAATAATGGGTTCTATTGGGATCGAACGGAAGGTGAAACCTGTCGTCAGCAGAATAAACCTTCCATTCCCAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743617 lncRNA downstream 199 17684798 ~ 17685352 (-) True G1522860
TU1743658 lncRNA downstream 13622 17670801 ~ 17671929 (-) True LOC110528763
TU1743671 lncRNA downstream 36262 17647976 ~ 17649289 (-) True G1522905
TU1743655 lncRNA downstream 43213 17640874 ~ 17642338 (-) False LOC110528763
TU1743668 lncRNA downstream 47236 17638097 ~ 17638315 (-) True G1522902
TU1743711 lncRNA upstream 32756 17735583 ~ 17735789 (-) True G1522931
TU1743714 lncRNA upstream 45728 17748555 ~ 17748797 (-) True G1522934
TU1743727 lncRNA upstream 99791 17802618 ~ 17802841 (-) True G1522945
TU1743740 lncRNA upstream 103214 17806041 ~ 17806465 (-) True G1522956
TU1743741 lncRNA upstream 104279 17807106 ~ 17807306 (-) True G1522957
XM_021608603.2 mRNA downstream 957 17675207 ~ 17684594 (-) True LOC110527371
XM_021608602.2 mRNA downstream 985 17675207 ~ 17684566 (-) False LOC110527371
XM_036952081.1 mRNA downstream 13621 17641367 ~ 17671930 (-) False LOC110528763
XM_036952082.1 mRNA downstream 13621 17641367 ~ 17671930 (-) False LOC110528763
LOC110527378 mRNA downstream 51987 17630872 ~ 17633564 (-) True LOC110527378
XM_036952085.1 mRNA upstream 16677 17719504 ~ 17815003 (-) False LOC110510546
XM_036952087.1 mRNA upstream 139540 17842367 ~ 17861625 (-) False LOC110527386
XM_036952088.1 mRNA upstream 139540 17842367 ~ 17861866 (-) True LOC110527386
XM_036951027.1 mRNA upstream 217258 17920085 ~ 17938168 (-) False LOC100135945
NM_001124289.1 mRNA upstream 217261 17920088 ~ 17937866 (-) False LOC100135945
TU1743656 other downstream 15592 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 235373 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 674173 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 742957 16937652 ~ 16942594 (-) True LOC110495686
TU1742232 other downstream 1266633 16418250 ~ 16418918 (-) True G1521712
TU1743613 other upstream 39140 17741967 ~ 17744898 (-) True LOC110510546
TU1743823 other upstream 349153 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 349153 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 349153 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 349153 18051980 ~ 18053825 (-) True LOC118941107

Expression Profile