RNA id: XM_036952085.1


Basic Information

Item Value
RNA id XM_036952085.1
length 6361
RNA type mRNA
GC content 0.51
exon number 18
gene id LOC110510546
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17719504 ~ 17815003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACATCTATGTGTCCATCCGTTATCATCTGGAAATTACTTTTTCTctgctcccttcctcccttcctcatccctccctccttttctctttctccttttcctTTCTGTTATCCCTCCCTACTTGCCCAATGAAAAAAGCCTGAATGAATTTGGGACAATCCTTATCAGTCAGTAGACTATTTTCCGAATGAAACATCAAAGACTTTGTGTGGATTTAGAATCTGAATTAGGAGGGTGAAAATGTGAAGGGGATTAAATTGAATGCTGAACTTAATGGTTCATTGGCTAAAATACACGGAATGGGCTTGACGGCAAGCTGCAGGCTAAAACAGCAGGCTACTATCGACATCAGGATGAAACGTAGTGAACATCAAATACCGGAGCAAAAAGTGGTGTTGTCATTTCGAATGGGAAGATAACAGCGCTGATAGAAATCTCATGTGGTTGTACTGCCACGCAAACACTCACGTGCGTGCGCGCGGGCAGCTGGTCTGTCTTCAACCCGCGCCGTCACGCGGGGCGACTGTTCTCAGTTGCACGCGCTCCCCTCTCGTCCTCCGTCGATATCAAGCGTTCCTCTGCCTtccttattatttatttattagccTAACTTAGAAAAAGAAACAGAGAGGCAGCAACCGGATTGCAACACCAGCGTAATGCAGGAAAATAACAAGTCCAAGGAAAGCGGGGGAAACGAAAAAAAAAGacgtggaaagagagagaaaattctGTTTTTCTGACGTGCGGACGTTTATCCTCTCTTCCTTTATTATATAATATTTACAGCGTGTCCTTTCTTCCTTTATTACATTATATTTACAGCGTATCTTTTCTTTGTTTGTTTAATTAAACTTAAAGagagaaaacaacaacattaGGTGGACTTCagtattaaaaacaaaacaactcCCAAGACAAGCCACGAGTGAGAAAAAGAAAACGAGCGATGCTTTCTCGtcttctctcctattctctcctcttctcttcttttctATTCTCTcgtcttctttcctctcctcgaTTTTCTTTCGAAGCAACACAATGGAGTATTTGTATCTACTTGGTCGATGGATGTGCAACTACTTTATACCCAGGAGAATTCGCCCATCTCCTTTTTTCACTGGGAGATTTATCCCGCTGTTGGTCTTCCTCCATAGCTTCGTTTTCCATCCCGATCCGTGCCTCTCCCACCCCCAGCCATGTCACATCCTGGCTCGGATCGGACACACGGTTCGTCTCGGTGCTCTGCTTCCCACCAGACAACCAGCCAGGGTACATAACGCTCTGAACAGAGCCTTGACCAGCCTGAAGCACCGGGCTGGAGAAGGCAACCCGCCTCTTCTGCCCTACAACCTCACCCTGGAGGTGGTGTCTCGGTCCCCGTCTGGTGGcgaccctgtctccctgtccaggtgtgtgtgtcaggagcTGGTTGTGCGAGGGGTGACAGGTGTCCTGGCCTTCCCTCGTTCACCAGAGGAACTCATCCACATCGACTTCCTGTCCTCCTTCCTGGAAATACCTTTTATATCACTACTGGAGGATCTAGAACCACTCAGAGTTAAGaACCGGTTCCATCTCCAAATGTCAGTTCGTGTTCCACCCTCTTGCCTGGCCAACCTTCTGCTCTCTGTTCTccagggggtagagggggagacagagggtgaagggagaagagaggggggaggcaaGGGTCAGgaagggggtagagggggagTTGCTGTGGTGTGTcctggatgggaggagaggggggagggactaCTGAAACATCTAGAGACACAGAAAGCAACAAGCTGGAATCTACTGGATATCATCAACCTTACACAtataggaggggaggagaggagggaggagagaggaaaggaggagaggagggaggagagagggaaggaggagaggagggaggagagaggggaggagggaagaggggctgAGAGAAGTGAAGAAACAGGTGATGAGACCAGAGAAGACAAGAGGGAAGCTGAggtcttgtctctcctctcccgtcgTCTTCTTCGCtccgcctctcctctctcctccgtggTCATCCTTGGTTCCGACCCAGAATGTCTCTCTTCTGTCCTCCGCTGCGCCCAGCgtctcgctccctcgctccccGCGCTGCAGTGGATTATGGGTAACCCTCTGtcacctgactctctcctctcgctgGGCGGGCCCCTCGGCCTATTGGCTTATGGAGAGgtGGGTCGTAAGCCCATCACCTTCTACATCCGAGACGCGCTGCGGTTGATTGGCCAGGCGGTGACGTCGGCCAGTGAGGTGAGGCCAGACCTGGCTCTGATCCAGAACCTGGTCAACTGTTACGACAAACCTAACAAAGAGGAAGTGCCCTCTTCTGGACAGTACCTGGCCAGgtTCCTCTCCAACACGTCATTCCAGGGTTCTACAGGCACGGTCCGTGTGGCACCTGCTCTCTCACAGGTCCTCTCCTCCCAGCTGTACCACGTGTGGAGCCTGAAGAGAGGTCCTCTTGGCCAGCCGTCCTGGGTCACCGTGGCCCACTGGACCACCGGGCGCCTACAGCTGGACGAGGGGGTGTTGGGGCTGGGGGTCGGGGCTGGCCTGGGGCTAGGCCCGGGGAGGAGGACAGGGTCCGGGTCTGGGTTAGGTGTCCAGAGAGGGGATAGGGACAGAGACAACAGTcctggagggagatggaggcCGGGGCTACAGATGGCGGGCCGGAGATTAAGGGTCGTGACCCTGGTGGAGCATCCCTTCGTGTTCACTAGAGAGGTGGATGAGGATGGGCTGTGTCCCGCTGGTCAGCTGTGTCTGGACCCTAGAACTAACCGCTCAGATCTACTGGACTCACTGTTCAGTCACCTGCACCAGACCAAtacaaccactaccactactgaccacaACCCAACAGAGGACCAGCGGAAGTGTTGCTATGGTTACGTTATTGACCTGTTGGAGAAGCTGTCGGAGGACCTGAAGTTCACCTTTGACCTTTACATCGTGGGAGACGGGAAGTACGGAGCGATGAGCAGCACTGGGAGTTGGTCCGGTCTGGTGGGAGACCTGCTGAGTGGAACAGCAGACATGGCTGTGACATCATTCTCCATCAACTCAGCCAGGAGCAGAGTTATAGACTTCACCTCTCCATTCTACTCTACCTCTCTGGGGAtactgGTGCGTAGCCAAGACACATCAGCCCCTATTGGAGCCTTCATGTGGCCTCTCCATTGGTCCATGTGGGTGGGCATCTTCGTCACTCTTCATCTTACCGCACTTTTCCTCACCGTCTATGAGTGGAACAGCCCCTTTGGTATGACTCCTCATGGCAGGAACAGACTCAGAGTGTTCTCCTACTCCTCAGCCCTCAACCTCTGCTACGCCATCCTGTTTGGACGCACTGTCGCTACTAAGactCCTAAGTGTTGGACCAGTAGGTTCCTGATGAACCTGTGGGCCATCTTCTGTCTGTTGGTGTTGTCCAGTTATACAGCTAACCTGGCTGCTGTCATGGTGGGGGAGAAAACCTTTGAACAGGTGTCTGGGATTCATGACGAgaagCTGCACCACCCATCCCGTGGGTTCAGGTTTGGGACAGTCAGAGAGAGCTCTGCAGAGGACTACATGAGGAAGAGTTTCCATGCTATGCATGACTACATGAGACGTTacaaccaacccaccacaccagacgGAGTGGACATGTTAAAgacagATCCTCCCCTACTAGATGCCTTCATCATGGATAAAGCTCTATTGGACTATGAAGTCTCCATCGATGCTGAGTGTAAACTAGCGACTGTGGGCAAGCCTTTCGCTATAGAGGggtaTGGTATAGGTGTTGCCCAAGGCTCTCCTCTCACTGCCAACGTGTCTGAATTCATCAGTCGCTACAAGTCAGAAGGGTACATGGACATATTACATGAGAAATGGTACAAGGTGGTGCCATGTGGGAAGCGAGTGTTCACTAACActgagaaTTTATCGATGGGGATAGATCATTTCTCAGGCCTGTTTGTGATGTTGTGTGTGGGGGTGGTTGGAGCCATCTTTACCTTGGCAGCTGAACACACCTTCTATCACCTAGCCCTGCCCCGGCTACGACggtcacacacactcacctactGGTTGCATACCAGCCAGAAGATCCATCGAGCCCTGAACACCCCTTACGAGGACGTAGGGAAAGAGTTGATTGGCCTGGACCACAAtccctccCCTTGTGTCTCTGACAGCTGCAGCCTCCACAGACACCAGCAGCCCCGCCCTCCTCCTCCCCCGTCTTCCCCCctgcctgccccccctcctcctcagccctcctctcCTGCCCGGGACATCAAGGAGAACAAGAGGGTCCACTTTGATCTGGAGAGTCTACACAGCTaccgtctacacacacacaccgcctcgTTCTGGGGACGTCCTGGCATGGTGGGGCGACACGGCCTGGGAGGGTGTCTGGGTGGTTTATCTCCTCCTCAGGTTAGCCTGCATGCTAACGGTGGCCCAGCATCGGCCCTGGCCTCCCCCGGCCTGGCCCTGCCTCCTCTGGGGAACCCAGGCAACCAGGCCTTCCTATGGGAGGGAGAGCTCCAGGAGGTCCAGGGGAGGATCGAGACGTTCACAGCCCAGCTAAGAGATGCCGTGGCCAGGAGGGCCGAGATACAGACCTGCCTGGAGAACCATAAAATGAACCAGAGCACAGCTACTGCTGTCAAACTGGAGAAAGACAAGGTTGGCCAGTCACAAAGCCTGGAGAGAGTGAGAACCAACGCAGAGAAAGATAGAaccaaggaagagagagaggggctcaACCAGGAGAAAGGGATGAGTGGCAGATCAAACCTCTGTAGCAgcctggacagagacagagacagagacaggacaagcAGGGACAGTTCCACTGTGAGACAAACAgccagacaggacacagacagggacagactgtTACACCAATCagaaactgagagagacagagacgaccAATCAAAAAGCCTGGGCGGAAATGGGAGCAGCCAATCACATGCCTCCAACATTCTGCAGACAGGGAGGAACAGCCAATCAGAAGCTCTGAACATcctacagaggaggagagagatccAATCAAAAACCTCTGCCAGCCTGGACAGAGGGACAACCAACCAATCAGGTGCTGTCAATACACTGCAGGGAGAAAGAACTGTCCAATCATGTAACTCCACCAGTCTGGAGAGAGGAAGAGCCAGGCAATCAGGTGCAGTGAAAGACCAGGAGAAGGGGAGAACTGTCCAAACACGGACAGGGGCTAGTCTGGACAGACTGAGAGCTATCCAATCCAGTGCCTGCACTGGGAATCTGGTTAGAGAACGTCCCGCCCCTGTGGACACCCAGAAGAGTTTGTGTTAGTCGTTTGATTGGTTATTTATTGGAACACAAAAGACCAATCAGAGGGCTGGAAAAGAATCTAACAGGTCCAAATGATTTACAAGGCAGCGGATGAAGTAAACAATATCAGAGTTTTAAAAAACAATGACAGAGATGTGGCACTGGTCCATTTGCCTCTGATGTCAACGGCTGCTGTCTGTTAACAAAATGTCTGATCTGAACTGTTTGTCTCCACTAGGTGTGTTTCCTTTTTGTTTCTAACTACTAATAGCTCACTCTCTTCATCTCATACCCCTGGGTTgtgttcactaggaaccaaacagaagcaaacagaacaaaacggGAAGGGACcgacctgaatttgtccaatagaatctCTTGTTTTCGTTGCAGAAAGTTTTTTGTTTGGAGCAAACGGTTTCCGTTGCAATGGTTTGTGACTAATGTACACACCCCAGGTCTGTAGTCAGTTCTCAGTGGCACACATGTGGCTCCTAAATGTTCAATCAAATGCTATCTCCGCCCAACCGGGTAAGAATCGGCTATCCCAGAGGGAAACTACACGTGTCCACTGTCATTGTCCTGACTGATCCTCTATAAGGACCTTGAGTTGGTTTGATACTATGCAGTTGAATTGGATTTACTTTAATGGAATTTGTATGttggatgtcatggtggtgtcAAATGTAACTATACAGTAACAATAGTTGAACCTGGAAGTGGATGAAAAAGGTGGACATGGAAAGAGAAAAGGCGGTTGTATTTCAGCCTATAGCAGGTGTTTTAGAAGAGATGCAGGTTGCTAGGTTACCTGTAGAGGACTGAGGAGTGTTGTAGAATGTTGTTCTGGTGTTGATGGGTCGTGTTCGGTGTCCCATTATGCTGCCTATAACAGCTATATGTCTCATTCTCACACACAACAGAATTATATCAGCATATTATTGGGACTcgtatcatgttgttgtatatcaTTTCCATTTTCTTAAATTAAACATTTATATACTGGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743607 lncRNA downstream 31802 17685565 ~ 17687702 (-) False LOC118941106
TU1743608 lncRNA downstream 31802 17685565 ~ 17687702 (-) False LOC118941106
TU1743617 lncRNA downstream 34152 17684798 ~ 17685352 (-) True G1522860
TU1743658 lncRNA downstream 47575 17670801 ~ 17671929 (-) True LOC110528763
TU1743671 lncRNA downstream 70215 17647976 ~ 17649289 (-) True G1522905
TU1743759 lncRNA upstream 24096 17839099 ~ 17839510 (-) True G1522974
TU1743730 lncRNA upstream 24565 17839568 ~ 17841541 (-) False G1522947
TU1743731 lncRNA upstream 24565 17839568 ~ 17841541 (-) True G1522947
TU1743761 lncRNA upstream 34462 17849465 ~ 17849774 (-) True G1522976
TU1743764 lncRNA upstream 37944 17852947 ~ 17853152 (-) True G1522979
XM_036952083.1 mRNA downstream 16677 17685551 ~ 17702827 (-) False LOC118941106
XM_021608603.2 mRNA downstream 34910 17675207 ~ 17684594 (-) True LOC110527371
XM_021608602.2 mRNA downstream 34938 17675207 ~ 17684566 (-) False LOC110527371
XM_036952081.1 mRNA downstream 47574 17641367 ~ 17671930 (-) False LOC110528763
XM_036952082.1 mRNA downstream 47574 17641367 ~ 17671930 (-) False LOC110528763
XM_036952087.1 mRNA upstream 27364 17842367 ~ 17861625 (-) False LOC110527386
XM_036952088.1 mRNA upstream 27364 17842367 ~ 17861866 (-) True LOC110527386
XM_036951027.1 mRNA upstream 105082 17920085 ~ 17938168 (-) False LOC100135945
NM_001124289.1 mRNA upstream 105085 17920088 ~ 17937866 (-) False LOC100135945
XM_036951028.1 mRNA upstream 105098 17920101 ~ 17938169 (-) True LOC100135945
TU1743609 other downstream 16751 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 49545 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 269326 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 708126 17009382 ~ 17011378 (-) True LOC118941063
TU1742516 other downstream 776910 16937652 ~ 16942594 (-) True LOC110495686
TU1743823 other upstream 236977 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 236977 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 236977 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 236977 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 617090 18432093 ~ 18436052 (-) False G1523149

Expression Profile