RNA id: TU1743072


Basic Information

Item Value
RNA id TU1743072
length 1464
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110528768
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17831450 ~ 17839017 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttagggttctttgttttacaatgaaggctagggttagggttctttGTTTTAAAATGAAGGTTAGGGTTCTTTGTTTTCTACAATGAAGGCTAGGGGTAGGGTTCTTTGTTTTACAATGAAGGTTAGGGTTCTTTGTTCTACAATgaaggctaaggttagggttcttTGTTCTACAATgaaggctagggttaggattagggttctttgttttacaatgaaggctagggttaggattagggttctTTGTTTTACAATGAAGGCTATGATTAGGATTAGGGTTCTTTGTTCTACAATgaaggctagggttaggattagggttctTTGTTCTACAATGAAGGCCAAGGTTAGGGTTCCTTGTTCTACAATgaaggctaaggttagggttatttgTTCTACAATgaaggctagggttaggattagggttctTTGTTCTACTGTGAAGGATAACTGTGGATGGAAAGTACTGTGCACCTGTCAGTGCATTTTATAGAAAATATAGTGTACCTTTTTTAATAAAGACTGTCTTGATTTTTAGTGTTTTGATAAATACCATGTATTGAATGTTTCTTGTTGTTGATTATACATTGATCATTATGTGGGTACCTACCTGTGTTCCAACAGTACTGTGGTAAGgaaatgtattattatatagtTTCATTATACGATGACAAACCGATGAAATTGCAATATAGCCATTCTCTCAAACACTGCCAAGTCAGTTTCTTCAGCCTGATGGAACGGTTAGTGATAGGGTTGGCCTAACAATCTGGCCATCCGGAATCACAACAACACGCTGACTTCTTCCCCATGGAAGCGCGCACATCGTTTTtcgtgacgttgtcagctaaTCCATTTATACTGTATGCAGCGTtgaccgtgaatgcagtctctgctaacgCAGGAATATTACCTTTACATTTTTAACGCGCTATAGCGCAGACCTTTAGTGCTCGAGCCCCTAGAGGGCTTGAGTGACCGTAATGAACAAATTATGTTTTGACAAAGAGAACTACAACTAAAATTGTTAAGATAACATGATTCATTTCCTGTTTGATCCACATCTGTAGCAGAGGATGtgtactgtttctatgtctccaGGTTTCATATCTCTGGCAACATGGTCCCTCCCTTTTTCACGTCTAGACCTCTGCATCTCTAATGACACcctaccctatatagtgcactacaaaggacAGATGGGGGTAAACACGACATTGTATGTGTCTCTGGCCTGTGTTAACGCAGCACGCTGGGGTGTCATTTCAGATGTGTTTGTTCATATGTGGTCTATACACCAGAGTAACACTCCCTCTCTGTAGTTCTAGCAATACATCTTTGTTTAAACACAGACACGTTTGTGTTTATCTTGGTTAATGTATTGTGCTATGTTGTGCTATCCCAGTGTTTTTGTTCGATTTTCtgtaataaataaaaatgtcatttggttaatactaataataata

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743068 lncRNA upstream 15834 17821093 ~ 17821606 (+) True G1522434
TU1743067 lncRNA upstream 17447 17819787 ~ 17819993 (+) True G1522433
TU1743064 lncRNA upstream 21920 17815300 ~ 17815520 (+) True G1522430
TU1743062 lncRNA upstream 22841 17813636 ~ 17814599 (+) True G1522428
TU1743060 lncRNA upstream 27428 17809800 ~ 17810012 (+) True G1522426
TU1743091 lncRNA downstream 5259 17844261 ~ 17844493 (+) True G1522449
TU1743092 lncRNA downstream 5552 17844554 ~ 17845026 (+) True G1522450
TU1743082 lncRNA downstream 6176 17845178 ~ 17845491 (+) True G1522440
TU1743083 lncRNA downstream 6873 17845875 ~ 17846110 (+) True G1522441
TU1743093 lncRNA downstream 8342 17847344 ~ 17847644 (+) True G1522451
XR_002472840.2 mRNA upstream 120521 17715037 ~ 17716919 (+) False LOC110519433
XM_036951414.1 mRNA upstream 122404 17705378 ~ 17715036 (+) True LOC118936563
LOC110527382 mRNA upstream 196650 17638633 ~ 17640790 (+) True LOC110527382
XM_021608611.2 mRNA upstream 200856 17633638 ~ 17636584 (+) False LOC110527377
XM_036952080.1 mRNA upstream 201746 17631679 ~ 17635694 (+) False LOC110527377
XM_036952101.1 mRNA downstream 203731 18042733 ~ 18053825 (+) True LOC110527394
XM_036952103.1 mRNA downstream 218700 18057702 ~ 18075184 (+) False LOC110528909
XM_036952105.1 mRNA downstream 218700 18057702 ~ 18075184 (+) False LOC110528909
XM_036952106.1 mRNA downstream 218700 18057702 ~ 18075184 (+) False LOC110528909
XM_036952104.1 mRNA downstream 225536 18064538 ~ 18075184 (+) True LOC110528909
TU1743047 other upstream 70746 17766219 ~ 17766694 (+) True G1522415
TU1742927 other upstream 209796 17623816 ~ 17627644 (+) False LOC110527374
TU1741359 other upstream 1369017 16465513 ~ 16468423 (+) True LOC110495674
TU1741077 other upstream 1898622 15938230 ~ 15938818 (+) False G1520748
TU1743076 other downstream 667 17839669 ~ 17844014 (+) False G1522437
TU1743077 other downstream 667 17839669 ~ 17844014 (+) False G1522437
TU1743079 other downstream 667 17839669 ~ 17844014 (+) True G1522437
TU1743080 other downstream 17139 17856141 ~ 17860614 (+) True G1522438
TU1743410 other downstream 540085 18379087 ~ 18380258 (+) True G1522684

Expression Profile