RNA id: XM_036952088.1


Basic Information

Item Value
RNA id XM_036952088.1
length 4039
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110527386
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17842367 ~ 17861866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGCTCTCGCCTCCCACCGCCTCCTGGTGATGCGCGAGATGCTACTGCTGctgaagagagaaaaggagaagagagagagggaagagaaagagagaggagagagaggcagagagagcgagaaagggcgagcgagagaggagagagagagactgcaacagCAGCCGACATGGAGCTCGAGCCTTTCCGGGGGACGGCGATCATCCTCTAATCTGCCAGGGTCACGGTAGAATACATTGACACCTGAGACAACAGAGAACACTTCTATATCACCATGAAGCACTGCTGACACCCCCCCTCACCTGACTACCAGAGAGAAGACACTTTCTTCCTCCCATACTCTCTCCCACTCAGCCCGTCTTCACAAGGATAAACGTTATTTACGAGAGTGGGAAAGTATGTCAGGTCTGCGTGGTAAGCTGCAGCGTGTCCAGTGGCGGGCAGGATGGCACTCCTTCACCTCCAGAGTCCTCAGGACCAAACCAGTAGAGAGCATGTTGGACTCTGGGACAGgtggtACCGGCAGCCATGGCACCAAACTAGCGAGGGTGTTGTCCACGGTAGACCTAGTGTCACTAGGGGTGGGCAGCTGCGTTGGCACGGGAATGTACGTGGTCTCTGGGCTGGTTGCTAAGGAGATGGCCGGACCTGGCGTCATCGTCTCCTTCATCATCGCTGCTGTcgcctctatactgtcagGAGTGTGTTATGCTGAATTTGGGGTTCGCGTTCCCAAGACAACAGGCTCAGCCTACACCTACAGCTATGTGACAGTGGGGGAGTGTGTGGCCTTTTTCATTGGCTGGAACCTGATCCTGGAGTACCTGATTGGTACAGCCGCGGGGGCGTCGGCTCTCAGCAGCATGGCGGACTCACTGGCCAATAAAAGCATCTCTACGTTTATGACTACACACATCGGAACACTCAACGGCCTGGGTAAAGGAGAGCAGTCGTACCCAGACCTCCTGGCCCTGCTGATAGCAGTAATAGTGACAGTGATCGTGGCCCTGGGGGTGAAGAACTCAGTAGGGTTTAATAATGTGTTGAATGTGATCAACCTGATGGTGTGGGTCTTCATGATGGTGGCCGGACTCTTCTTCGTCAACGGACACAACTGGGACGATGGAAGGTTCTTACCCTTCGGGTGGTCAGGgGTGATGCAGGGAGCAGCAACATGTTTCTATGCCTTCATAGGGTTTGACATCATCGCTACAACAGGAGAGGAAGCCAAGAGTCCCAACACCTCTATACCCTATGCTATTACTGTTTCCCTCATCACCTGCCTTACTGCATACGTctctgTATCAGTGATTCTGACTCTGATGGTTCCCTATACAGAGATCGATGCAGACGCTCCTCTGATGGAGATGTTTGCTGTACATGGCTGTTATTTTGCTAAGTACATAGTAGCAGTAGGCTCTGTAGCtggcctgtctgtcagtctcctGGGCTCTCTGTTCCCCATGCCACGAGTCATCTACGCTATGGCTGGAGATGGACTGCTGTTCAGgTTCCTGGCCCATGTGTCTCCCTACACTGAGACTCCAGCAGTGGCATGTGTtgtgtctggctgtctggctgctctcctctctctcctcgtctccctaCGAGATCTCATAGAGATGATGTCCATAGGAACACTACTGGCTTACACACTggttagtgtgtgtgtgttgttgctaCGCTACCAGCCAGAATCAGACATCCACGGCTTTGTGAACTTCCTGTCTGAGGAGCAGTCCAATAAGAAGAAGGAGGGCGTGTTAGCTGAGTGTGAGAAGGAAGTGTGCTCTCCAATCAGTGAAGTAGATGACTATGGAGGACCTCAAACTAACACCTGTGGAGCTAAGAATCTCCCCTCGctagGCGACAACGAGATGCTGATTGGTAAACCAGATAAAACCACTTACACTGCCAGCCACCCGAACTACGGCACCGTCGACATGGGCTCCGGCATCGAATCAGAAGAGTCGGAGGGCGGGATGTCGTGGAGGCTGAAGAAGCTGATTGGTCCGCGGTACTACACCATGAGGATCCGTTTGGGCCTGCCTGGGAAGATGGACCGGCCCACTCCGGCAACTGGAAAGACAGTTACTGtctgtgtcctcctcctcttcctcatcgtATTCATCTTCAACTCCTTCATCATCTTCGGAGCGGCCAGCATCGGTGATGGCAGCTGGTGGGCTCTTCTCCTGCTGATCTTCCTGGTCATCTTCATGGCCCTCCTCATCGTCATCATCCTGCAGCAGCCAGAGAACCCGAAGCGACTGCCCTACATGGCTCCGGCTGTTCCCTGGGTTCCTGCTGCTGCCATGCTGGTCAACAGCTACCTGATGTTAAAACTGTCTGCCATCACCTGGATACGCTTCGCTGTCTGGTGTTTCCTAGGTATCCTGATCTACTTTGGCTATGGGATGTGGAACAGTACTTTGGAGATCAGGTCCAGGGAGCAGGAGGTTCATGCGTCTACATACCAGCGCTACGATGGTCACCATGCCGGGGTGGACGACGGCTTCTCAGGCTTCAGCGTTGACGACGACCTCTACCCCCCTAGCAACAACGACCCCTGGGCCGCACCAGACGGTGTCGACGGGTCAGGGCTGGTACCCCCCAaggctgatgatgatgattggaCGGATCCAAAGGGAGGAGCTAAGAGAGCGCTAGCGGAGGAGGACCCAATGGATTTCTGAGAAGAAAGGAATGATGGACGGATGTTTCCGAGAGGATTGATAGATGTTACTGTTGTAAACACCTGAATGTACTGCCTTCTGccggctgcctgcctgcctgccgggtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgaatgttTGTGTGGGTCCCTTGTTacttatttaaaaacataattttTTCATTGAGTTACAAAGGAAGGATGATCCTATGGAGGAAAGCTGTAGACTACCAATCAGAAACAGTGGGCGGGGTCTTGGGGTTGATTTGGTGATGGGCATACAGTGAAGGTATTTTCCTCTCACTATAGACAGTCCAGAGTGATGACAGACTGGGAGCGACGAGTCAGCATTTCCTGGTTCACCACACTCACAGGAAGTTGTCAGAGCGCTGATCCGAGGTCATTTCCTGTCACTGGTGCAGGTGTCTCTGCTGCTTCTCTCATCTCACAGAgactagctacacacacacacacacacacacagacacacttagacacacaccCGCCTCTCCAGTCTCTATCTGGGAAGGAGGGGGGCTGATGGGTTTTTATGTGTCACATTGTAATTGGACTTTGCTTGCAATAGTGCCTTcatctgtgtgtgcatgcgtgtgtgtgtttttattttggctgtgtgtgtgcatgtgtgcgtgtgtgtgtacgcttTTACACCTTGTATCTATGTCCCCTTCAGGGTCTGACCAGTGGAGTGTGTTTGTGACTTATTTTGCTCCATCCTACTCTCTATGAACCCCCCCCCATCCCACCCCCCACAAGCCCCTGTTGCTGCGTTACTAGAGCTCAGAATGGAAAGGTTCTAAATGACAGATTTGTTCTAAACAGAGTTATGGACGccaccctgctctgctctgcctacAGGTGTGCTAAATCTCCAAATGAACGTTACTATATTAGAAAGAAGACGAGATGAGAATTGCTCTCACATCAGACAAATATCTCTGAGTGTTTAGTCACATAGAACCCTCTAATTCTATGGTCTCCACCCCCTTGGGGAAGCCTTACTCAAATGCACTAAACTAAAGATGCCACGCGACCCCTCCTACTCTCCACGACCCCTAACCGCTAACCTCTATCCCTAACCACACTACCCAGGGTTCTCTCTGCTGTTCAGGGGTGGGCTCGCTTGTGTTGTccagtgaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13871 SLC7A14; solute carrier family 7 (cationic amino acid transporter), member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743730 lncRNA downstream 826 17839568 ~ 17841541 (-) False G1522947
TU1743731 lncRNA downstream 826 17839568 ~ 17841541 (-) True G1522947
TU1743759 lncRNA downstream 2857 17839099 ~ 17839510 (-) True G1522974
TU1743746 lncRNA downstream 29796 17812358 ~ 17812571 (-) True G1522962
TU1743745 lncRNA downstream 31191 17810972 ~ 17811176 (-) True G1522961
TU1743776 lncRNA upstream 12742 17874608 ~ 17874824 (-) True G1522991
TU1743778 lncRNA upstream 18151 17880017 ~ 17880441 (-) True G1522993
TU1743780 lncRNA upstream 21111 17882977 ~ 17886755 (-) True G1522995
TU1743818 lncRNA upstream 160535 18022401 ~ 18022696 (-) True trnal-cag-10
TU1743843 lncRNA upstream 222658 18084524 ~ 18087754 (-) True G1523045
XM_036952085.1 mRNA downstream 27364 17719504 ~ 17815003 (-) False LOC110510546
XM_036952083.1 mRNA downstream 139540 17685551 ~ 17702827 (-) False LOC118941106
XM_021608603.2 mRNA downstream 157773 17675207 ~ 17684594 (-) True LOC110527371
XM_021608602.2 mRNA downstream 157801 17675207 ~ 17684566 (-) False LOC110527371
XM_036952082.1 mRNA downstream 170437 17641367 ~ 17671930 (-) False LOC110528763
XM_036951027.1 mRNA upstream 58219 17920085 ~ 17938168 (-) False LOC100135945
NM_001124289.1 mRNA upstream 58222 17920088 ~ 17937866 (-) False LOC100135945
XM_036951028.1 mRNA upstream 58235 17920101 ~ 17938169 (-) True LOC100135945
XM_036952089.1 mRNA upstream 78071 17939937 ~ 18012067 (-) False LOC110528772
XM_036952090.1 mRNA upstream 78071 17939937 ~ 18012067 (-) False LOC110528772
TU1743613 other downstream 97469 17741967 ~ 17744898 (-) True LOC110510546
TU1743609 other downstream 139614 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 172408 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 392189 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 830989 17009382 ~ 17011378 (-) True LOC118941063
TU1743823 other upstream 190114 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 190114 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 190114 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 190114 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 570227 18432093 ~ 18436052 (-) False G1523149

Expression Profile