RNA id: XM_036951027.1


Basic Information

Item Value
RNA id XM_036951027.1
length 2229
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC100135945
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17920085 ~ 17938169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGAACAGTGGATACCAGCccagacactgtgtgtgtgttcactaatcACTATCACAGAGTTGAACCACCATGAAAACAGGGTGACAAACACAACCTAAGACAGGAGGTGAAGTGTGTTAGGCACCATGTGTAAATGGTAATGATGACATGAATGATGAACAGCCACCAGTAAGGTGTACAGATAGAGAGGTGCTCTGCTCCGGTGCGTCTTTCTGTCCAGTGCTGTGTGTATGTCGAGATGAGTGCGTGGACACAGCGTGATCCCAGCGATTGATGATTaccctggaagtgtgtgtgtgatcagttCGTTTTGTTGGAGCTGGTGTCGAGACTCTGAACCCGTCATGGAGTCGGGAAAGCAGCTGACCGGCACTCTAACCCTAGCAGTGTTTTCAGCAGTCTTGGGTTCTCTACAGTACGGATACAGCCTGGGAGTCATCAATGCGCCAcagaagGTGATAGAGCAGCATTATGGGCGGTCCCTGGGGGTGCTCCCTGAGGAGCCTCTCCTCCTATCAGAGAACGGTACAGGGACAGAGAAGCAGGAAGTGCATCCCTCTGTGGTCATGTATTGGTCTCTGTCTGTGTCGATCTTCTCCATCGGGGGCGTGGTGTCATCCTTCCTGGTGGGCTTTGTTGGAGACCTGAGAGGAAGGGTGAAGGGCATGTTGATGGTGAATGTGTTAGCAGTAATAGCAGGTCTACTGATGGTGATGGCTAAGATGTGGAAACCTCACGTCATGGTCATCGCTGGACGATGTGTCATGGGATTCTACTGTGgtcTGTCCTCAGGGTTAGTTCCTATGTATATAGGGGAGATAGCTCCCATGGCCTACAGAGGATCTCTAGGAACCTTACATCAGCTGGCTATTGTTAGTGGTATACTACTGAGTCAGGTGCTAGGTCTAGAGTTCCTCCTGGGTAATGACTACTACTGGCCGCTGCTGCTGGGTCTGTCTGGAGCTCCTGCTGTTTTACAGTCTCTACTGCTGCCACTGTGTCCTGAAAGTCCCAGATACCTCTACATCAAGAGAGGCATGGTGGAGGAGGCCAAAAATAgTCTGCGTCGTCTGAAGGGAGAGTATGACCCATCAGCTGAcctggaggagatgaggagggagaaggaggaggtggagaaggaggcgCAAGTCTCTATCGCTGTACTGGTGCGGTCGTCTCTCTACAGGCAGCAGCTGTTTGTAGCCCTGATGATGCATCTCTCACAACAACTGTcaggaatcaacgctATCTTTTATTACTCCACAGCCATCTTTGAGAGAGCAGGAGTCACTCAGCCTGTCTATGCAACCATTGGAGTAGGAGTTCTCAATACCGTCTTTACCATGGTGTCGgtgGCTCTAGTGGACAGGGCCGGCAGACGGACGTTGACTCTGATTGGTTTAGGTGGGATGTGTATCTGTGCCGTCGCCATGACAGTCGGCCTCGTGTACCTGaaAGTCTACTCCTGGATGTCCTATGTCAGTATGTCGGCCATCttcctgtttgtgtgtttctttGAGATCGGCCCTGGTCCCATCCCCTGGTTCATTGTGGCTGAGTTATTCAGTCAGGGCCCCAGGCCTGCTGCTATAGCTCTGGCTGGCTGCACCAACTGGACCAGCAACTTCATCATAGGCATGACCTTCCCTTACATAGAGgCTCTGTGTGGTAGCTATGTATTCATCCTGTTTGCTGTGCTGTTGTTTGGCTTCACTGTGTTCACTTATCTGCGCGTGCCGGAGACCAAAGGGAAGACATTTGAAGAGATAGCAGCTGTGTTTAAAAAGGGAATGAAACAGACACCAGGAACCAGAAAGACTGGAACTGAAACTGGtactggtacaggtacctccaccgaGCTGGAGCAGCTCAAATCAGACTCCCAGGCCTGACATGCTCACGAGTCCAGGGGGATCCAACCCTAGAGAGTTGCAGGGTGTGCAAGCTTTAGTTCAGGTACAACTCCTGACATGACTAACTTTACATAACATACACAGGGCCCAGAATGTTTCCTGCTCAGGATAAAGCAGACAGAAAAACTCCTGGCTCTACTGTATCATTCATGGTCAGTACAATAACGAGAAAGACAGCAGATGGTTTTGTTTCTAGAGGTTACATTATCCTGTTCTACcatgttccatgtgtaactgacTGAATGTATTCACTCAAGTTGAATGTCACCAAATGGGACTTTACAATTACTATTAATAAAATACTACCAAGATAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743780 lncRNA downstream 33330 17882977 ~ 17886755 (-) True G1522995
TU1743778 lncRNA downstream 39644 17880017 ~ 17880441 (-) True G1522993
TU1743776 lncRNA downstream 45261 17874608 ~ 17874824 (-) True G1522991
TU1743766 lncRNA downstream 64853 17854923 ~ 17855232 (-) True G1522981
TU1743765 lncRNA downstream 66316 17853567 ~ 17853769 (-) True G1522980
TU1743818 lncRNA upstream 84233 18022401 ~ 18022696 (-) True trnal-cag-10
TU1743843 lncRNA upstream 146356 18084524 ~ 18087754 (-) True G1523045
TU1743854 lncRNA upstream 166451 18104619 ~ 18105012 (-) True G1523056
TU1743861 lncRNA upstream 175303 18113471 ~ 18114182 (-) True G1523063
TU1743884 lncRNA upstream 225046 18163214 ~ 18163965 (-) True G1523081
XM_036952088.1 mRNA downstream 58219 17842367 ~ 17861866 (-) True LOC110527386
XM_036952087.1 mRNA downstream 58460 17842367 ~ 17861625 (-) False LOC110527386
XM_036952085.1 mRNA downstream 105082 17719504 ~ 17815003 (-) False LOC110510546
XM_036952083.1 mRNA downstream 217258 17685551 ~ 17702827 (-) False LOC118941106
XM_021608603.2 mRNA downstream 235491 17675207 ~ 17684594 (-) True LOC110527371
XM_036952089.1 mRNA upstream 1769 17939937 ~ 18012067 (-) False LOC110528772
XM_036952090.1 mRNA upstream 1769 17939937 ~ 18012067 (-) False LOC110528772
XM_036952091.1 mRNA upstream 1769 17939937 ~ 18012067 (-) False LOC110528772
XM_036952093.1 mRNA upstream 1769 17939937 ~ 18012067 (-) False LOC110528772
XM_036952094.1 mRNA upstream 1769 17939937 ~ 18012067 (-) False LOC110528772
TU1743613 other downstream 175187 17741967 ~ 17744898 (-) True LOC110510546
TU1743609 other downstream 217332 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 250126 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 469907 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 908707 17009382 ~ 17011378 (-) True LOC118941063
TU1743823 other upstream 113812 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 113812 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 113812 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 113812 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 493925 18432093 ~ 18436052 (-) False G1523149

Expression Profile