RNA id: NM_001124289.1


Basic Information

Item Value
RNA id NM_001124289.1
length 1923
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC100135945
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17920085 ~ 17938169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttCGTTTTGTTGGAGCTGGTGTCGAGACTCTGAACCCGTCATGGAGTCGGGAAAGCAGCTGACCGGCACTCTAACCCTAGCAGTGTTTTCAGCAGTCTTGGGTTCTCTACAGTACGGATACAGCCTGGGAGTCATCAATGCGCCAcagaagGTGATAGAGCAGCATTATGGGCGGTCCCTGGGGGTGCTCCCTGAGGAGCCTCTCCTCCTATCAGAGAACGGTACAGGGACAGAGAAGCAGGAAGTGCATCCCTCTGTGGTCATGTATTGGTCTCTGTCTGTGTCGATCTTCTCCATCGGGGGCGTGGTGTCATCCTTCCTGGTGGGCTTTGTTGGAGACCTGAGAGGAAGGGTGAAGGGCATGTTGATGGTGAATGTGTTAGCAGTAATAGCAGGTCTACTGATGGTGATGGCTAAGATGTGGAAACCTCACGTCATGGTCATCGCTGGACGATGTGTCATGGGATTCTACTGTGgtcTGTCCTCAGGGTTAGTTCCTATGTATATAGGGGAGATAGCTCCCATGGCCTACAGAGGATCTCTAGGAACCTTACATCAGCTGGCTATTGTTAGTGGTATACTACTGAGTCAGGTGCTAGGTCTAGAGTTCCTCCTGGGTAATGACTACTACTGGCCGCTGCTGCTGGGTCTGTCTGGAGCTCCTGCTGTTTTACAGTCTCTACTGCTGCCACTGTGTCCTGAAAGTCCCAGATACCTCTACATCAAGAGAGGCATGGTGGAGGAGGCCAAAAATAgTCTGCGTCGTCTGAAGGGAGAGTATGACCCATCAGCTGAcctggaggagatgaggagggagaaggaggaggtggagaaggaggcgCAAGTCTCTATCGCTGTACTGGTGCGGTCGTCTCTCTACAGGCAGCAGCTGTTTGTAGCCCTGATGATGCATCTCTCACAACAACTGTcaggaatcaacgctATCTTTTATTACTCCACAGCCATCTTTGAGAGAGCAGGAGTCACTCAGCCTGTCTATGCAACCATTGGAGTAGGAGTTCTCAATACCGTCTTTACCATGGTGTCGgtgGCTCTAGTGGACAGGGCCGGCAGACGGACGTTGACTCTGATTGGTTTAGGTGGGATGTGTATCTGTGCCGTCGCCATGACAGTCGGCCTCGTGTACCTGaaAGTCTACTCCTGGATGTCCTATGTCAGTATGTCGGCCATCttcctgtttgtgtgtttctttGAGATCGGCCCTGGTCCCATCCCCTGGTTCATTGTGGCTGAGTTATTCAGTCAGGGCCCCAGGCCTGCTGCTATAGCTCTGGCTGGCTGCACCAACTGGACCAGCAACTTCATCATAGGCATGACCTTCCCTTACATAGAGgCTCTGTGTGGTAGCTATGTATTCATCCTGTTTGCTGTGCTGTTGTTTGGCTTCACTGTGTTCACTTATCTGCGCGTGCCGGAGACCAAAGGGAAGACATTTGAAGAGATAGCAGCTGTGTTTAAAAGGGAATGAAACAGACACCAGGAACCAGAAAGACTGGAACTGAAACTGGtactggtacaggtacctccaccgaGCTGGAGCAGCTCAAATCAGACTCCCAGGCCTGACATGCTCACGAGTCCAGGGGGATCCAACCCTAGAGAGTTGCAGGGTGTGCAAGCTTTAGTTCAGGTACAACTCCTGACATGACTAACTTTACATAACATACACAGGGCCCAGAATGTTTCCTGCTCAGGATAAAGCAGACAGAAAAACTCCTGGCTCTACTGTATCATTCATGGTCAGTACAATAACGAGAAAGACAGCAGATGGTTTTGTTTCTAGAGGTTACATTATCCTGTTCTACcatgttccatgtgtaactgacTGAATGTATTCACTCAAGTTGAATGTCACCAAATGGGACTTTACAATTACTATTAATAAAATACTACCAAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743780 lncRNA downstream 33333 17882977 ~ 17886755 (-) True G1522995
TU1743778 lncRNA downstream 39647 17880017 ~ 17880441 (-) True G1522993
TU1743776 lncRNA downstream 45264 17874608 ~ 17874824 (-) True G1522991
TU1743766 lncRNA downstream 64856 17854923 ~ 17855232 (-) True G1522981
TU1743765 lncRNA downstream 66319 17853567 ~ 17853769 (-) True G1522980
TU1743818 lncRNA upstream 84535 18022401 ~ 18022696 (-) True trnal-cag-10
TU1743843 lncRNA upstream 146658 18084524 ~ 18087754 (-) True G1523045
TU1743854 lncRNA upstream 166753 18104619 ~ 18105012 (-) True G1523056
TU1743861 lncRNA upstream 175605 18113471 ~ 18114182 (-) True G1523063
TU1743884 lncRNA upstream 225348 18163214 ~ 18163965 (-) True G1523081
XM_036952088.1 mRNA downstream 58222 17842367 ~ 17861866 (-) True LOC110527386
XM_036952087.1 mRNA downstream 58463 17842367 ~ 17861625 (-) False LOC110527386
XM_036952085.1 mRNA downstream 105085 17719504 ~ 17815003 (-) False LOC110510546
XM_036952083.1 mRNA downstream 217261 17685551 ~ 17702827 (-) False LOC118941106
XM_021608603.2 mRNA downstream 235494 17675207 ~ 17684594 (-) True LOC110527371
XM_036952089.1 mRNA upstream 2071 17939937 ~ 18012067 (-) False LOC110528772
XM_036952090.1 mRNA upstream 2071 17939937 ~ 18012067 (-) False LOC110528772
XM_036952091.1 mRNA upstream 2071 17939937 ~ 18012067 (-) False LOC110528772
XM_036952093.1 mRNA upstream 2071 17939937 ~ 18012067 (-) False LOC110528772
XM_036952094.1 mRNA upstream 2071 17939937 ~ 18012067 (-) False LOC110528772
TU1743613 other downstream 175190 17741967 ~ 17744898 (-) True LOC110510546
TU1743609 other downstream 217335 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 250129 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 469910 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 908710 17009382 ~ 17011378 (-) True LOC118941063
TU1743823 other upstream 114114 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 114114 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 114114 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 114114 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 494227 18432093 ~ 18436052 (-) False G1523149

Expression Profile