RNA id: XM_036952090.1


Basic Information

Item Value
RNA id XM_036952090.1
length 5528
RNA type mRNA
GC content 0.54
exon number 35
gene id LOC110528772
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 17939937 ~ 18012067 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCTCTGTCGGTTGAACCTACAGACGTGGATTCGGTGCTGCTGCTGATAATGTTCACGTCCGGTTATAGTCACACACCAGCATCTCTGCTCTAGCAGACTTTTTTAACGTCGGTCACCTCTAAGTCTACTGACAAACGGGGATATATTATATTCTCTCTTTTTCATTTTCTCTGTCGCCATCTCTCCGTCGCTTATCGGTGAGAAAGAGGCTCGTTTCCCCGAGGAAGAGGGCAGCCTATAGCGGTGGCCAAGGGCATTTACTCCGTGGTCTCGTTGTCTGGATGATTTCTGATTCTGGTGATTTTCACAATATTTTATTTGAATCATGGCGACTGATTCCCCTGCCCGGAGTCTGGATGAGATCGATCTGTCTGCTCTACGGGACCCAGCAGGCATCTTTGAGCTGGTGGAGTTGGTGGGCAATGGAACCTACGGACAGGTGTACAAGGGTCGTCATGTCAAGACAGGGCAACTTGCAGCCATCAAGGTCATGGATGTCACCGGggatgaggaagaggagattAAAGCAGAGATCAACATGTTGAAGAAGTACAGCCACCATCGGAACATTGCCACCTACTACGGTGCCTTCGTCAAGAAGAACCCTCCTGGCATCGACGACCAGctatggttGGTGATGGAGTTCTGTGGGGCGGGCTCAATAACAGATCTGATTAAGAACACCAAGGGGAACTCACTGAAGGAGGAGTGGACTGCCTACATCTGCAGAGAGATCCTCAGGggtctgACCCATCTCCACCAGCACAAGGTCATCCACAGAGACATCAAGGGTCAGAACGTGCTGCTGACGGAGAACGCAGAGGTCAAActggTGGACTTTGGTGTGAGCGCCCAGCTGGACCGGACGGTGGGGAAGAGGAACACCTTCATCGGGACTCCCTATTGGATGGCTCCTGAGGTCATAGCCTGCGACGAGAACCCTGAGGCCACCTACGACTTTAAGAGTGACCTGTGGTCTCTGGGTATAACAGCTATAGAAATGGCAGAAGGAGCCCCTCcactttgtgacatgcACCCAATGAGAGCTCTCTTCCTCATCCCACGAAACCCCGCCCCCAGACTCAAGTCCAAGAAGTGGTCTAAGAAGTTCCAGTCGTTCATTGAGAGTTGCTTGGTGAAGAGTCATGGTCAGAGACCCAGCACAGAGCAGCTGTTGAAGCACCCCTTCATCAGAGAGCTGCCCAACGAACGACAGATCCGCATCCAACTGAAGGACCACATTGACAGAACCAAGAAGAAAcgtggagagagggATGAGACAGAATATGAGTACAGCGggagtgaagaggaggaagaggagcgaGACGTGGGGGagccaagCTCCATCATCAACATCCCCGGTGAGTCGACATTAAGGCGGGACTTCCTGCGTCTGCAGCTGGCCAATAAGGAACGCTCTGAGGCTCTGAGGCGCCAGCAGTTGGAACAACAGCAGAACGAGGAACACAAACGCCTCCTACTGGCCGAACGACAGAAACGCATAGAGGAGCAgaaagaacagaggaggagactggaggagCAACAGCGCAGGGAGCGTGAGTTGAGGAAGcagcaggagagagaacagaggaggcgCTATGAGGAGATGGAACAACTacggagagatgaggagaggaggcacGCGGAGAGAGAACAGGAATATATCCGTAGACAGCTGGAGGAGGAACAGAGACAGTTAGAGATCCTACAGCAACAGCTTCTACAGGAGCAGGCTCTACTGCTGGAGTATAAGCGTAAGCAGATTGAGGAACAACGTCAAGCCGAGAGACTCCAGAGACAGTTACAACAGGAGAGAGCCTACCTGGTGTCTCtacaacagcagcaacagcaacaacaacaaaaccaaGATGGCCGACCAGGCGAGAAGAAACCTCTGTATCACTATAAAGACTCAGCTAGTCCTACTGACAAACCTGCATGGGCtaaagagGTCCTGAAGCAGCAGACACACCCCCAGAGCCACTCACCCCGCCCATTCCTCagacaaagccactccttcaacCAACCTTCATCCCCCATTCCCTCCCACGCCAACCTCCCTCGCCGAGCCCCCTCCGACCCCACCCGCCCCCCTCACATCCGTATCTCCCTGGAGACCAGGGATCTAGTAGATCCTGTTCTGAAACAGGAGATCAGCCAGCAGGTTAGAGAGATGAGAGCTCAGAAAGCCGGTCAGAGGGTGgtcagacagaaagaaagaggacGCAATACCGGAGCCAACCACCAGGGGGTAGTACAACACAACAACCGGGGGCCAAAAGGGCCTAGCCGAGCTGGTCAAAAGGCTGGTCAGCAAGACCGAGTACGCAGTGCCAGACCTAAACACCAAGGGCCACAACCCAACCCCAACCAGGGGCCACATCATAATGGGAAGGGGCAACAGGCTGGCTTTAACCGAGGCCCCAGCCCTAACCCCAACCACAACCAATCTCAAAAAGAGAGCCCCATCTCTAATCCCCAAGCCCCTAACCAAGAGGCCCTCAATGGGCCAGCCTGGGcacccagctccagccccaaCCAGGGACATAACCTGGGGGTGAAAGACCAGGGGCAGATATGGGTGGAGGAGCGGTCCAAGCTGAACAGACAGAGTTCTCCAGCGCTACAGCATAAGGCCGTCTCCAGCCGGGTCTCTGAGGCCTCCCTGCCTCCTCGCTCCGAGTCCTTCAGCACTGCAGGGATGCAGCCGGCCCGCACCCCACCAACACACCGCCCAGTTGAACCacagatggCCCATCTGATTCCAGTGAAGACCATGACAGGCTCTCAGTCTctgcaggagagcagagggggagaggcgggggggatggggaggagaggggaggaggggggaggcatGCCCCCCCGTCAGAACTCTGACCCCACCTCTGACTCGAACCCCGCCCCTCCACCTCGTACCACTAGCCGAGAGGACGATGAGCTTCCCCCTAAGGTCCCTCAGAGAACCACCTCCATCTCCCCAGCCCTGATGAGGAAAAACTCCCCCAACGGACAGGGACTCATacgagacagTAATCCAGACCTGAGAGCATCAGAGTTGTGTCTGGATACTGCTCTACAGAggtcctctcactcctcctcctcatcctcaccttCATCacagagagGTCCACCAGTCCAGGAGACCTCCCCCCCAGCAGAAGCCAATCAGGAGGTCAGGATCAGACCGGAGGAGGGGCGAGACTCAGGCAGACCCAGCAGACCTGCCAGCTATAAGAAAGCCATAGATGAGgacCTAAGTGCGCTGGCTAAGGAGCTGAGAGagttgagggtagaggagggcAGTAGACCTCCAGTGAAGGTGACGGACTACTCATCCTCGAGTGAGGAGCGGTCAGAGAGCAGCGACGAGGACGGAGAGACGGGGCAAGATGGGACTGTGGCCgtcatgcCACAGCAGGGTGAAGCATATGGAGGTTTGACTGAAGAACCTCTGGCGGGCTCCttcaacacaacacaggacagcACTCTGATCATGACAGAGgcggaggagaggagtagggcaCCAGGCCATGGTGAGAGTAACGGGTTTCATAGCAACCATCACGGCAGCGGTAACCAAGGCAATCTCCCTGACCTGGTCCAGCAGagctcctcctcttcaccctcaaCCCTGGATGCACTGAAAGAGCAATTTGGATCTAAAGCCTCCTTCTCCCCATTCGGTGACCCACGGTCCTATCAGACCTCCCCTACTGAAGACGAGGAAGAGAGCTCAGCTGGTCTGTTCGCCAGTGAGTTGCTGCATCAGGAGCAGGCCAGACTAGCCGAGGCCAGAAAGATCAGCGTGGTCAACGTCAACCCAACCAACATACGACCTCACAGTGACACGCCTGAGATACGCAAATACAAGAAGCGCTTCAACTCTGAGATACTGTGTGCTGCTCTCTGGGgtgTGAACCTGCTGGTGGGGACAGAGAATGGTTTGATGTTGCTTGACCGTAGCGGTCAGGGGAAGGTCTATAACCTGATAACCAGGAGACGCTTCCTACAGATGGACGTCCTGGAGGGACTTAATGTCCTGGTTACTATATCAGgGAAGAAGAATAAGCTGCGTGTGTACTACCTGTCCTGGCTGAGGAACAGGATACTCCACAACGACCCAGAGGTGGAGAAGAAGCAGGGCTGGGTCACTGTAGGAGAGCTGGAGGGCTGCGTACACTACAAAGTTGTAAAGTACGAGAGGATCAAGTTCCTGGTGATCGCTCAGAAGAACGCAGTGGAGATCTATGCCTGGGCCCCCAAACCCTACCACAAGTTCATGGCCTTCAAGtcatTCACTGACCTGCAGCACCGCCCCCAGCTGGTTGACCTGACGGTGGAGGAGGGGCAGAGGTTAAAGGTCATCTACGGCTCCAGCCTGGGCTTCCATGTCATCGACGTCGACTCTGGCAACCCTTACGACATCTACGTCCCCTCACACATTCAGACCCAGGTGACTCCCCATGCCATCGTGATTCTTCCTAAGACAGACGGGATGGAGATGTTGTTATGTTATGAAGATGAGGGAGTCTACGTCAATACCTACGGACGCATCACTAAAGACGTCGTGCTGCAGTGGGGAGAGATGCCTACTTCtgttgCATATATCCACTCTAGCCAGATCATGGGCTGGGGGGAGAAGGCCATAGAGATCAGGTCTGTGGAGACAGGACACCTGGACGGGGTCTTCATGCACAAGAGAGCCCAGAGACTCAAGTTCCTGTGTGAGAGGAAtgacaaggtgttcTTTGCGTCAGTGAGGTCTGGAGGCAGCAGTCAGGTCTTCTTCATGACCCTCAACCGTAGCTCCATGATGAACTGGTGAAACTAACCCCTCCCACTGTCTTCCCATTGGCCTGCTCAGCTGTCCATCACGGGCCAAGGCTAATTTCATAAGCCAATTAAAACAATGGACCAAGAGAATCAAATCGCGACCTGAATCAAAGAAGTGAATTGAAAAATAGGAGAGTCCAACACTGAATCGAAACTGAGAGAATCAAACACTGAATGACTCGAACGCTGAGAgaatcaaatatcaaatcagtGTGAAAGAATTGAAGTGTAAATGAATCAGGCTCTGAGAGAATCAAACTTGAAGACAGTGAAACACTGAGAGACTACAACACTGTAACAGACTTGAAGGACTATAaagaatgaaataataaagagaTACATGACTATTATGAAGAGGAGTCTGAAGGTAGAGGAGTGTTTGGATCAACGGGGGCGTTGGTTCCTGGTTTTCCAAGATCTCGACTACCGTCTGTGGAGACGAACCGGAACTTCCGGATCCTAATCTTTCTTTCTCACCTCCACTTCACCTTTAATAACGTCCCCTCtttctccaccactccacccctcTTCTCTAAAATATCGGCTATGTCCCTTTAAAACAAAATCCTtgcctctatctccctcctcttctcctcctgtccctctgtctccctcctcttctcctcctgtccctctatctccctcctcttctcctcctgtccctctgtctccctcctcttctcctcctgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743780 lncRNA downstream 53182 17882977 ~ 17886755 (-) True G1522995
TU1743778 lncRNA downstream 59496 17880017 ~ 17880441 (-) True G1522993
TU1743776 lncRNA downstream 65113 17874608 ~ 17874824 (-) True G1522991
TU1743766 lncRNA downstream 84705 17854923 ~ 17855232 (-) True G1522981
TU1743765 lncRNA downstream 86168 17853567 ~ 17853769 (-) True G1522980
TU1743818 lncRNA upstream 10334 18022401 ~ 18022696 (-) True trnal-cag-10
TU1743843 lncRNA upstream 72457 18084524 ~ 18087754 (-) True G1523045
TU1743854 lncRNA upstream 92552 18104619 ~ 18105012 (-) True G1523056
TU1743861 lncRNA upstream 101404 18113471 ~ 18114182 (-) True G1523063
TU1743884 lncRNA upstream 151147 18163214 ~ 18163965 (-) True G1523081
XM_036951028.1 mRNA downstream 1768 17920101 ~ 17938169 (-) True LOC100135945
XM_036951027.1 mRNA downstream 1769 17920085 ~ 17938168 (-) False LOC100135945
NM_001124289.1 mRNA downstream 2071 17920088 ~ 17937866 (-) False LOC100135945
XM_036952088.1 mRNA downstream 78071 17842367 ~ 17861866 (-) True LOC110527386
XM_036952087.1 mRNA downstream 78312 17842367 ~ 17861625 (-) False LOC110527386
trnal-cag-10 mRNA upstream 10404 18022471 ~ 18022553 (-) False trnal-cag-10
trnal-cag-11 mRNA upstream 11259 18023326 ~ 18023408 (-) True trnal-cag-11
trnal-cag-12 mRNA upstream 11831 18023898 ~ 18023980 (-) True trnal-cag-12
trnal-cag-13 mRNA upstream 12685 18024752 ~ 18024834 (-) True trnal-cag-13
trnal-cag-14 mRNA upstream 13257 18025324 ~ 18025406 (-) True trnal-cag-14
TU1743613 other downstream 195039 17741967 ~ 17744898 (-) True LOC110510546
TU1743609 other downstream 237184 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 269978 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 489759 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 928559 17009382 ~ 17011378 (-) True LOC118941063
TU1743823 other upstream 39913 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 39913 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 39913 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 39913 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 420026 18432093 ~ 18436052 (-) False G1523149

Expression Profile