RNA id: TCONS_00047798


Basic Information

Item Value
RNA id TCONS_00047798
length 523
RNA type processed_transcript
GC content 0.48
exon number 3
gene id XLOC_024094
representative False

Chromosome Information

Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 22571475 ~ 22634675 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGAGTTGGCATGCTACAGAAAGGAAGCTGTCACAGCTCTCGGCCGCAGTGCTAACAGGGCGTTCGGACAAGAGGACTTTAGGGACACGAGCAGTTTCAATCTGCCAAACTTTGGAgaaaactttccttctaaaaaaTAACAAGCAATTGTTGTGTTTTGTGTCCCACGGGAGTGTGGAAGGGTGATTTCGGCGGCTCTCAAAGTTATTGGAGCTCACTGAAACTTCTGTTTGCTGTATAGGTTGGCACCATGAGTGCTGAAACTGTGAATAACTACGACTACTCGGATTGGTACGAAAATGCAGCGCCAACCAAAGCTCCTGTCGATTGGTGGTCATGCTGGTTCTTGCCATCCTTGCCAGACGCCAGAAGCTGAGTGACAATCAAAGAGGACTAACAGGTTTACTCAGcCCAGTAAACTTTTTAGACCACACGCAACACAAGGGCCTTGCCGTAGCGGTGTATGGAGTTCTCTTCTGCAAGCTGGTTGGAATGGTCCTCAGTCATCATCCGCTTCCTTTC

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0071939 vitamin A import biological_process
GO:0034633 retinol transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0019841 retinol binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0034632 retinol transmembrane transporter activity molecular_function
GO:0016918 retinal binding molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-060616-252 Enables calmodulin binding activity and identical protein binding activity. Acts upstream of or within chordate embryonic development and retinol transport. Is integral component of plasma membrane. Is expressed in several structures, including hindbrain neural plate; immature eye; nervous system; pleuroperitoneal region; and trunk. Used to study syndromic microphthalmia 9. Human ortholog(s) of this gene implicated in syndromic microphthalmia 9. Orthologous to human STRA6 (signaling receptor and transporter of retinol STRA6).

Ensembl:

ensembl_id ENSDART00000127831

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00049236 lncRNA upstream 90174 22494222 ~ 22497122 (+) True XLOC_024093
TCONS_00049042 lncRNA upstream 92991 22491993 ~ 22494305 (+) False XLOC_024093
TCONS_00047795 lncRNA upstream 95432 22489689 ~ 22491864 (+) True XLOC_024092
TCONS_00047783 lncRNA upstream 453994 22131858 ~ 22133302 (+) True XLOC_024086
TCONS_00049234 lncRNA upstream 1087400 21498287 ~ 21499896 (+) False XLOC_024080
TCONS_00049237 lncRNA downstream 381808 22976589 ~ 22980625 (+) True XLOC_024098
TCONS_00047809 lncRNA downstream 469846 23064627 ~ 23107533 (+) False XLOC_024099
TCONS_00047810 lncRNA downstream 469846 23064627 ~ 23112585 (+) False XLOC_024099
TCONS_00049238 lncRNA downstream 469873 23064654 ~ 23112504 (+) False XLOC_024099
TCONS_00049239 lncRNA downstream 469935 23064716 ~ 23111134 (+) False XLOC_024099
TCONS_00047792 mRNA upstream 252013 22319942 ~ 22335283 (+) False XLOC_024091
TCONS_00047794 mRNA upstream 252561 22320738 ~ 22334735 (+) True XLOC_024091
TCONS_00047793 mRNA upstream 260707 22319958 ~ 22326589 (+) False XLOC_024091
TCONS_00047791 mRNA upstream 260771 22319942 ~ 22326525 (+) False XLOC_024091
TCONS_00047790 mRNA upstream 260799 22319940 ~ 22326497 (+) False XLOC_024091
TCONS_00047800 mRNA downstream 49173 22643954 ~ 22700975 (+) False XLOC_024095
TCONS_00047801 mRNA downstream 49173 22643954 ~ 22704233 (+) False XLOC_024095
TCONS_00047802 mRNA downstream 87284 22682065 ~ 22704233 (+) False XLOC_024095
TCONS_00047803 mRNA downstream 88859 22683640 ~ 22704233 (+) True XLOC_024095
TCONS_00047804 mRNA downstream 125071 22719852 ~ 22849160 (+) False XLOC_024096
TCONS_00047785 other upstream 348304 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047756 other upstream 1983284 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047755 other upstream 1994699 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047732 other upstream 2812621 19774559 ~ 19774675 (+) True XLOC_024053
TCONS_00047707 other upstream 3094676 19489550 ~ 19492620 (+) True XLOC_024042
TCONS_00047805 other downstream 135626 22730407 ~ 22849186 (+) False XLOC_024096
TCONS_00047842 other downstream 951798 23546579 ~ 23546696 (+) True XLOC_024119
TCONS_00047848 other downstream 1456267 24051048 ~ 24052227 (+) True XLOC_024124
TCONS_00047852 other downstream 1773195 24367976 ~ 24368090 (+) True XLOC_024129
TCONS_00047853 other downstream 2003995 24598776 ~ 24608014 (+) True XLOC_024128

Expression Profile

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