RNA id: trnal-cag-23



Basic Information


Item Value
RNA id trnal-cag-23
length 83
RNA type mRNA
GC content 0.60
exon number 1
gene id trnal-cag-23
representative True

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18039231 ~ 18039313 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtcaggatggccgagcggtctaaggcgctgcgttcaggtcgcagtctcccctggaggcgtgggttcgaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1743818 lncRNA downstream 16535 18022401 ~ 18022696 (-) True trnal-cag-10
TU1743780 lncRNA downstream 152476 17882977 ~ 17886755 (-) True G1522995
TU1743778 lncRNA downstream 158790 17880017 ~ 17880441 (-) True G1522993
TU1743776 lncRNA downstream 164407 17874608 ~ 17874824 (-) True G1522991
TU1743766 lncRNA downstream 183999 17854923 ~ 17855232 (-) True G1522981
TU1743843 lncRNA upstream 45211 18084524 ~ 18087754 (-) True G1523045
TU1743854 lncRNA upstream 65306 18104619 ~ 18105012 (-) True G1523056
TU1743861 lncRNA upstream 74158 18113471 ~ 18114182 (-) True G1523063
TU1743884 lncRNA upstream 123901 18163214 ~ 18163965 (-) True G1523081
TU1743871 lncRNA upstream 161938 18201251 ~ 18202588 (-) True G1523073
trnal-cag-22 mRNA downstream 777 18038372 ~ 18038454 (-) True trnal-cag-22
trnal-cag-21 mRNA downstream 1349 18037800 ~ 18037882 (-) True trnal-cag-21
trnal-cag-20 mRNA downstream 2211 18036938 ~ 18037020 (-) True trnal-cag-20
trnal-cag-19 mRNA downstream 2783 18036366 ~ 18036448 (-) True trnal-cag-19
trnal-cag-18 mRNA downstream 6088 18033061 ~ 18033143 (-) True trnal-cag-18
trnal-cag-24 mRNA upstream 490 18039803 ~ 18039885 (-) True trnal-cag-24
trnal-cag-25 mRNA upstream 1258 18040571 ~ 18040653 (-) True trnal-cag-25
trnal-cag-26 mRNA upstream 2104 18041417 ~ 18041499 (-) True trnal-cag-26
XR_005037392.1 mRNA upstream 12992 18052305 ~ 18054354 (-) False LOC118941107
XM_021571086.2 mRNA upstream 121642 18160955 ~ 18167361 (-) False LOC110495700
TU1743613 other downstream 294333 17741967 ~ 17744898 (-) True LOC110510546
TU1743609 other downstream 336478 17687930 ~ 17702753 (-) True LOC118941106
TU1743656 other downstream 369272 17642418 ~ 17669959 (-) False LOC110528763
TU1743542 other downstream 589053 17441659 ~ 17450178 (-) True G1522794
TU1742514 other downstream 1027853 17009382 ~ 17011378 (-) True LOC118941063
TU1743823 other upstream 12667 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other upstream 12667 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other upstream 12667 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other upstream 12667 18051980 ~ 18053825 (-) True LOC118941107
TU1743984 other upstream 392780 18432093 ~ 18436052 (-) False G1523149