RNA id: XM_021571086.2


Basic Information

Item Value
RNA id XM_021571086.2
length 2569
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC110495700
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18160955 ~ 18167363 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATAGATGTGGGATAGAGAAGGACCATTAGTTCCCCGCTGGGACCagatctgtctctgtgtgtgtgcgtgagtttgtgcgtgtgtggttgtccgtgcgtgcgtgcgtgcatacataaacgcgcacacacacaaacgtgacTGACAGTGGTCAGTGTTTATGATGATGATTTTTGGTCGCTATGCATGCTTAAGCATAATGACATCGttccctcttctctcactctctctctccacggtcgGGCAAGCTGAGAAGcgcagctgctgtgtgtgtgagtgagggaggACGGGTGAGGGATCGGGAGACAGAAAAGGAGGAAGGATTTTTATCACCGACACTCTCTACCCCTGTGGTCGACAACAGTGCTCTACCGGCGGTTGGAGGAGCCAGATAGACCCGTTGGGCGACTGGTAACCTTGGAGGCACGCCAAACCACCCATGAGGAGGAAAGCGGGTGGAAGGATGCCTCTTTCCCTGATCTGACAGAAGACATTTGTTCGGTGAATGAGCGGAGGGCACCGAATTGACGCAATACAGTAGgtgagTAACCATGGAATCCACACACCTCCTGGACGGCTCCAAGAAACGGGTGAAGATCCACCCTCACACCGTCACCGCCAAGTACgccccacacacaccccacacacacacacacttcccccagCCCGGAGACGAGGGGTACGATGATGCTCCCTCCTTCGAGGACTTCGGCTCCTTCCTGGAGGAGACCTCGGACAAGAAACAGCTGACAGGAACCAGGAAGTGGACAGGAAAGGCCGGTGCTCTGTTTGGAGGGAAGGACAAAAACAAAGACACACCCCCTAGACCTCCcatggggggaggggaggggggtgtggagggaggagggaagggtgcAGGAGGGGGAGTAGGGGAGCAGCTAGCGAGTTTCGGCGAGGCGTCTGTCTCTGCGTCTCGGCTCACGTGGGCCAGTGTGGTCTTGGCGGGGCTGGCtcacggctgtgtgtgtgttctgacacgCCTGGCCGCCTCACACTTTAACCTCCCACCCTTAACTCTCCTCTTGGTACGATCCATCCTCCAGCTGCTCTATGGGACTGTACCAATGAAACGGGCGGAGACGGCCTTTGGCTCAAAGGGCTATCGGCGGAAGCTGCTCCTGTACGGTCTGActcactccttctccctctgctgcGCTTACTCGTCCTTATCCTTCGTCTCCCTCGGCGACGACGAGGCCATGTTGACAACCTGGCGCCTGGCGACCACCGTCCTGTCGGCCACTCTGGCGTTGTTGCTCCTGGACGAGCGGCTGGGATTGGTGGACCTGGTCACCGTAGCGACAGGCGTGTTAGGACTGGGTCTGGCGCTCGTTCCTAACCCAACAGGGCTGGATGAGAACAACAACGGGACCGGGTCAGGGATGCCCAATGGGGGGATACCCAATGGGGGGATACCCAATGGGGCGACACCGGCACAACAATCGGCCCAGTTCTGGCGGGAAGCGTTTGGTTGGTCCCTGACTGTTCTCGCAGGACTATGGATGTCTCTGGCTCTAGTCATGTACCGCTCTCTGAAGGAGCGGGTCAGTGTCGGCACAGCTCTGTTCACTGTCAGTTGGACCGGCTGTCTGAGCACCGCAGTCTCCATGCTTCTCCTCCGACAGGGGCCAGTGTGGCCGGCCAGTCTCCAGGCTTGGTGCATCGTCCTGGGGGTAGCTGTGTGCTCTGCTGGGGGGTTCGTGGGGGTGACCCATGGCCTCACCCGACTTCACCCAGCTTTGGTGTCGGCTACACAGGGTCTGGAAGTACCGGTCGCTATGGTGCTGGAGATCGCTGTTGTGCCATTGGTTCCCTCAGTGTGTGAGGTCATAgggggtgtggtggtggtggcgagCGTGGGTTGGCTTGTTACAGTGAAGCTCCTCCCCTCTCGAGGAAgtgggaggaaacagagagaagagTACGAAGAGATTCTGGACTCGCCAATTAAatagcacacacgcacacgaaaGCACATGCACGCACAAAGATTCTGGACTTACCAATCAAATAGACCACTCCCCTTCTATCTatgtttctgtctttctctcttttcccagggggtttgctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcagtgtgtatATAAGAGGACTCTATGGTGAATGTTAATGCTTGAGCTAAAATAGCTGTCTTTAACcacagatctagaatcagatACACCAACTCCAATCCTTAACTTAACCATTAGGAGGTGTCAAaatatctgaccctgtatcagtggttaGGGAAAACATCTACCTACCCCAATGTGAATAGTAAATGTATCTATTTTGTATTGTAGTTGTTGTAATTGTTGTGAAGTAGCAATACTGTGTTGTCTTACTGGCTATTGTGATAGTGTGATGTCATATTAAAACCTCACTGTCTTACTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743861 lncRNA downstream 46773 18113471 ~ 18114182 (-) True G1523063
TU1743854 lncRNA downstream 55943 18104619 ~ 18105012 (-) True G1523056
TU1743843 lncRNA downstream 73201 18084524 ~ 18087754 (-) True G1523045
TU1743818 lncRNA downstream 138259 18022401 ~ 18022696 (-) True trnal-cag-10
TU1743780 lncRNA downstream 274200 17882977 ~ 17886755 (-) True G1522995
TU1743871 lncRNA upstream 33890 18201251 ~ 18202588 (-) True G1523073
TU1743930 lncRNA upstream 71157 18238518 ~ 18238736 (-) True G1523114
TU1743931 lncRNA upstream 71789 18239150 ~ 18239685 (-) True G1523115
TU1743932 lncRNA upstream 72560 18239921 ~ 18240135 (-) True G1523116
TU1743938 lncRNA upstream 85336 18252697 ~ 18253031 (-) True G1523122
XR_005037392.1 mRNA downstream 106601 18052305 ~ 18054354 (-) False LOC118941107
trnal-cag-26 mRNA downstream 119456 18041417 ~ 18041499 (-) True trnal-cag-26
trnal-cag-25 mRNA downstream 120302 18040571 ~ 18040653 (-) True trnal-cag-25
trnal-cag-24 mRNA downstream 121070 18039803 ~ 18039885 (-) True trnal-cag-24
trnal-cag-23 mRNA downstream 121642 18039231 ~ 18039313 (-) True trnal-cag-23
XM_036952120.1 mRNA upstream 57421 18224782 ~ 18231424 (-) False LOC110495699
XR_005037396.1 mRNA upstream 57421 18224782 ~ 18231424 (-) False LOC110495699
XR_005037398.1 mRNA upstream 57421 18224782 ~ 18231424 (-) False LOC110495699
XM_036952121.1 mRNA upstream 58346 18225707 ~ 18231424 (-) False LOC110495699
XR_005037395.1 mRNA upstream 58639 18226000 ~ 18231424 (-) False LOC110495699
TU1743823 other downstream 107130 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other downstream 107130 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other downstream 107130 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other downstream 107130 18051980 ~ 18053825 (-) True LOC118941107
TU1743613 other downstream 416057 17741967 ~ 17744898 (-) True LOC110510546
TU1743984 other upstream 264732 18432093 ~ 18436052 (-) False G1523149
TU1743986 other upstream 264732 18432093 ~ 18436052 (-) False G1523149
TU1743987 other upstream 264732 18432093 ~ 18436052 (-) True G1523149
TU1744124 other upstream 278226 18445587 ~ 18446561 (-) True ghs-r
TU1744079 other upstream 373784 18541145 ~ 18541711 (-) True G1523234

Expression Profile