RNA id: XM_036952116.1


Basic Information

Item Value
RNA id XM_036952116.1
length 4211
RNA type mRNA
GC content 0.54
exon number 26
gene id LOC110517300
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18176721 ~ 18224140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGTAAGGTTGCAGTGAGAGGCTGCGCCACCAGAACAGCATTACAGCGAGGAAGGCTCCACCAGATGGCAGTTTAGGATTGTTCCTTTCTGCTCCAAGGCGCGGTTCCCGCTTCTCACGACatatttacaatattaaaatCTACACACTTTTATCAGATATATCGATTATTTTATTTCGGAAGACTGTAATCGATTGGTCAATGGCCGGTAAAGgggCTGGTGTGTTGTGAGGTGCTGTGTCCCGTCCCCAGTGTTGAGTGAATTTGGTCACCactctgtaacccccccccccacacacacacacacacacacacacacacacacggttgacCCCGTACCGAGCCACACCCCTCCCTCCAGCGgaccacacacacccactctttcctgaggacacacacccctcccctgcaGCAGTCAGGATGATCACCTCTGAGCTGCCTGTCCTACAGGACTCGTCCAATGAGAGCGGAGCGGCAGACACAGTGAgtctgagtgtgagtgtgagtgagctGGAGGACCCGACAGACACTAAAGgcaagaagaagagagggaggcctgGCAGACCACCAGCAGCCAATAAGAAGCCTCGGAAGTCCCCAGCGGAGAAGGCTACAGGCGGGGCTAAAGGGAGGAAGGCCAATGGGGTCCCTCAGACCAACGGCGAGGGAGGAGACCCCGTCACTCTGTTTGAGGTGGTCAGAATGGGAAAGAGTGCCATGCAGTCTGTGGTTGATGACTGGATCGAGTCGTACAAGCAGGACAGAGACATCGCCTTACTGGACCTCATCAACTTCTTTATCCAGTGTTCTGGCTGCAAAGGCACCGTGCGCATCGAGATGTTCCGGAACATGCAGAACGCTGAGATCATCAGGAAGATGACAGAGGAGTTTGACGAGGACAGTGGGGACTACCCTCTCACCATGCCCGGGCCGCTGTGGAAGAAGTTCCGCTACAACTTCTGTGAGTTCATCTGCGTATTGATACGTCAGTGCCAGTACAGCATCATCTACGATGAGTACCTCATGGACACGGTCATATCCCTCCTCACGGGACTATCTGACTCACAGGTCAGAGCTTTCAGACACACCAGCACACTGGCAGCGATGAAGTTGATGACAGCGTTGGTGAACGTGGCGTTGAACCTCAGTATCCACCAGGACAACACCCAGAGACAGTATGAGGCTGAGAGGAACAAGATGGCCGGAAAACGAGCCAATGAGAAGCTAGAGCTGCTGCTGCAGAAGAGGAAGGAGCTCCAGGAGAACCAGGATGAGATTGAGAACATGATGAACTCTATCTTCAAAGGCATCTTTGTCCACcgctacagGGATGCTATAGCTGAGATCAGAGCTATCTGTATTGAGGAGATTGGAGTTTGGATGAAGATGTACTCTGACGCCTTCCTCAACGACAGCTACCTGAAATATGTAGGATGGACCTTACACGACCGGCAAGGTGAGGTCCGTCTGAAGTGTCTGAAGGCTCTCCAGAACCTGTACACCAACAGAGAACTGTTTCCTAAACTGGAGCTGTTCACCAACCGCTTCAAGGACCGCATCGTGTCCATGACTCTGGATAAGGAGTATGACGTGGCTGTGGAGGCTATTAGACTGATCACTCTCATCCTGCAGGGCAGCGAGGATGCGTTGTCCAATGAGGACTGCGAGAATGTCTACCACCTGGTTTACTCCGCCCACAGACCTGTCGCCGTGGCAGCAGGAGAGTTTCTGCACAGGAAGTTGTTCAGCAGACATGACCCCCAGGCAGAGGAGGAGTTGgctaagaggagagggaggagcagcCCCAACGGGAACCTCCTCCGCATGCTGGTGCTTTTCTTCTTGGAGAGTGAGCTTCATGAACATGCAGCCTATCTGGTGGACTCTCTGTGGGAGAGTTCTCAGGAGCTGCTGAAGGACTGGGAGTGTATGACTGAGTTACTGCTGGAGGAGCCTGTacaaggagaggaggTgctgtcagacagacaggagagttCCCTGATAGAGTTGATGGTGTGTACCATCCGGCAGGCAGCAGAGGCTCACCCACCCGTCGGCAGGGGCACTGGGAAGCGTGTTCTCACGGCGAAGGAGAGGAAGACTCAGATAGACGACAAGAACAAACTGACAGAACACTTCATCATGGCCCTGCCCATGCTCCTGTCTAAGTACCAGGCTGACTCTGAGAAGGTGGCTAACCTGCTACAGATCCCTATGTTCTTTGATCTGGACGTGTACAGCGCTGGGCGTATGGAGAagcacCTAGATGCCTTACTGAAGCAGATCCGCCTGGTGGTGGAGAAACACATTGAGACAGATGTTCTGGAGGCCTGCAGTAAGACCTACAGCATCCTGTGTTCTGAGGAGTACACCATCATGAACAGAGTGGACATCGCCCGCTCGCAACTCATCGACGAGATAACGGACCGCTTCACACACTCCGTAGAAGACCTGCTGCAAGAGGCCGAGGAGGCCGACGATGACGACATCTACAACGTTCTGTCTACCCTCAAGAGACTCACGGCCTTCCACAAtgCTCATGACCTGACGCGGTGGGACCTGTTTGGTAGCTGCTacaggttgttgaaggctggTATTGAGCAGGGGGCCATGCCAGAGCAGATCGCtgtccaggccctgcagtgttcCCACTACTCCATACTGTGGCAGCTGGTGAAAATCACAGAGGGAACTCCTAGTAAGGAGGACCTGGTGGCTCTGAGGAGAGTGGTGAAGTCCTTCCTGGCTGTCTGTCAGCAGTGTCTGTCCAATGTCAACACACCTGTCAAAGAACAGGCCTTCATGTTGTTGTGTGACCTGCTGATGGTCTTCAGTCACCAGTTGGTGTCTGGGGGCAGAGAAGGACTGGAGGCCCTGGTGTTCAACCCAGACAGCACCTTACAGAACGAGCTGCTCACCTTCATCCTGGACCACGTCTTTATAGACCAGGACGATGAGAACCAGAGCAtggAAGGCGACGAGGAGGATGAAGCCAATAAGATAGAAGCCCTTCACAAGAGGAGAAACCTGCTCGCAGCCTTCAGCAAACTCATCATCTATGACATCGTGGACATGCCTGCTGCTGCAGACATCTTCAAACACTACATGAAGtATTATAATGACTATGGTGATATCATCAAGGAGACTCTCAGTAAGACCAGACAGAGTGATAAGATCCTCTGTGCCAAAACCCTCATCCTCAGTCTGCAACAGCTGTTCAACGAGcttctccaggaccagggtcCTACTCTGGACAGAACATCGTCTCACGTCAGCGGCATCAAGGAGTTGGCCCGGCGCTTCGCCCTCACCTTCGGCCTGGACCAGATCAAAACCAGAGAGGCTGTCGCTACGCTGCACAAGGATGGTATAGAGTTTGCCTTTAAGTACCAGAACCCCCATGGTGCAGAGTTCCCTCCTCCTAACCTGGCCTTCCTAGAGGTCCTCTCAGAGTTCTCCTCCAAACTGCTGCGACAGGACAAGAAGACTGTtCACTCGTATCTGGAGAAGTTTATGTCGGAGTCGATGTCGGAGCGTCGTGAGGACGTGTGGCTGCCCTTAATCTCCTACCGGAACAGTCTGCtaacaggaggagaggatggggaccGGATGTCGGTAACGTCAGGCGCCAGCAGCAAGACCAGCTCCATCCGCAGCAAGAAGGGACGGACGCCAATACACAAGAGTAAACGCATCGAGGAGGAGAGTAGTGTGGAGGCCTCCTGGCTTCGTGGTAATGACAACCTCCAGACACCGGGGGCGCTAACCACCCCTCAGCTCACCTCCACCGTCCTCAGAGAAAACCCACGGCAGGCGGCGGACACACACCTACCTGACCACGACTCTGAACCTGGCTCAGAGAACGACTATGTACacaaTCCCCAGATGCAGATGTCTTGGCTAGGCCAACAGAAGATGGAGGACAGCAGGAAGGATAGAACAGCCATGAACTACATGAAGGCCCGCAACCAGACTGTCAGACAAACTGTtcgtggtctGATGGAGGATGACGCAGAGCCAATCTTTGAGGACGTCATGATGTCATCGCGAGGTCAACTGGAGGACATGAACGAGGAGTTCGAAGACACCATGGTCATCGACCTGCCTCCCTCCAGGAACAGACGTGAGAGGGCGGAGCTCAGACCAGACTTCTTCGACTCAGCAGCCATGATCGAGGACGAGTCGggtttcaccatgccTATGTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743201 lncRNA upstream 39913 18129571 ~ 18136808 (+) True LOC110495694
TU1743240 lncRNA upstream 154440 18022058 ~ 18022281 (+) True G1522544
TU1743143 lncRNA upstream 236010 17938478 ~ 17940711 (+) True G1522487
TU1743116 lncRNA upstream 243440 17921980 ~ 17933281 (+) False G1522466
TU1743259 lncRNA downstream 2127 18224782 ~ 18231387 (+) True G1522563
TU1743312 lncRNA downstream 9235 18231890 ~ 18234662 (+) False G1522601
TU1743314 lncRNA downstream 9235 18231890 ~ 18236181 (+) False G1522601
TU1743315 lncRNA downstream 10653 18233308 ~ 18234662 (+) True G1522601
TU1743319 lncRNA downstream 17254 18239909 ~ 18241184 (+) True G1522604
XM_021571108.2 mRNA upstream 18220 18156850 ~ 18158501 (+) True LOC110495710
XM_021571099.2 mRNA upstream 31240 18143136 ~ 18145481 (+) True LOC110495707
XR_005037393.1 mRNA upstream 39782 18131106 ~ 18136939 (+) False LOC110495694
XM_036952110.1 mRNA upstream 47358 18097563 ~ 18129363 (+) False atr
XM_036952112.1 mRNA upstream 47358 18097567 ~ 18129363 (+) True atr
XM_036952124.1 mRNA downstream 29083 18251738 ~ 18305237 (+) False LOC110497069
XM_036952125.1 mRNA downstream 73768 18296423 ~ 18305237 (+) False LOC110497069
XM_036952126.1 mRNA downstream 75695 18298350 ~ 18305237 (+) False LOC110497069
XM_036952127.1 mRNA downstream 87326 18309981 ~ 18432516 (+) False LOC110495706
XM_036952128.1 mRNA downstream 87332 18309987 ~ 18432516 (+) False LOC110495706
TU1743080 other upstream 316107 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 332707 17839669 ~ 17844014 (+) False G1522437
TU1743077 other upstream 332707 17839669 ~ 17844014 (+) False G1522437
TU1743079 other upstream 332707 17839669 ~ 17844014 (+) True G1522437
TU1743047 other upstream 410027 17766219 ~ 17766694 (+) True G1522415
TU1743410 other downstream 156432 18379087 ~ 18380258 (+) True G1522684
TU1743460 other downstream 371679 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 493207 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 736789 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 799350 19022005 ~ 19022395 (+) True G1523506

Expression Profile