RNA id: XR_005037399.1


Basic Information

Item Value
RNA id XR_005037399.1
length 1680
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC110495699
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18224782 ~ 18231424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCCCCACCCACTTATACGTCAGTCAGACAACAATGGCGGCCTTCGCTGTAGCACGGAGCCGCTGCGTTCTGCTTTCCGGACTAAAAGCTTCTTTTAAAACATTCGGACAGGTAAAACATGGCGCGGCTTCGGCAGCCGTTGCACAGTCCGAGCTGCAGCAACAGTCGCGGCGGTGGTATTCCGTTAGTCATCTCTCCGTTCAGGAGAggatagacagaaagaggaatGCTGCGCTGATCGGAGGAGGTCAGAAGAGAATTGACGCGCAACACAAAAGGGGGAAGctgacagccagagagagagttgAGCTCCTGTTGGATAAAGACTCGTTTGTAGAGTGTGACATGTTTGTGGAACATCGCTGCTCTGACTTCGGCATGGAAGAGGACCACAACAAGttCGCAGGGGACAGTGTGGTGACTGGACAGGGGAGGATCAACGGAAGGCTGGTGTATGTCTTcagtcagGACTTCACAGTATTTGGAGGCAGTCTGTCTGGGGCTCACGCACAGAAGATCTGTAAGATCATGGACCAGGCCATGATGGTGGGTGCTCCAGTCATTGGTCTAAACGACTCTGGCGGAGCCAGGATCCAGGAGGGGGTGGAGTCACTGGCTGGATACGCTGACATCTTCCTGAGGAATGTGATGGCTTCAGGTGTGGTTCCTCAGATCTCTCTGATCATGGGTCCCTGTGCTGGAGGAGCTGTCTACTCTCCTGCCCTGACCGACTTCACCTTTATGGTCAAGgacacCTCATACCTGTTCATCACAGGTCCTGACGTAGTGAAGTCTGTCACCAATGAAGACGTCACTCAGGAGGAACTGGGAGGAGCTAAAACACACACCGCCGTGTCAGGCGTCGCTCACCGTGCGTTTGAGAACGACATCGATGCTCTGCTCAACCTCCGAAACTTCTTCAACTTCCTTCCCCTTAGCAACCAGGACCCCGCCCCCGTTACTGAGTGCCACGACCCCAGtGATAGACTGGTTCCTGGTCTGGACACCATTGTTCCCTTTGAGACCACTAAAGCCTACGACATGCTGGACATCATCCAGGGGATTACGGACGAGAGGGAGTTCTTTGAGATCATGCCTAACTACGCTAAAAACATCGTAGTGGGATTCGCTCGCATGAACGGACGAACTGTTGGAATTGTAGGGAATCAACCTAAAGTAGCATCTGgttgTCTGGACATTAACTCATCAGTGAAGGGAGCTCGCTTCGTTCGTTTCTGTGACGCTTTCAACATCCCCATCCTCACCTTCGTGGACGTGCCTGGTTTCCTGCCAGGTACGTCTCAGGAGTATGGCGGTATCATCCGACACGGGGCCAAGCTACTGTTTGCCTTTGCTGAGGCCACCGTCCCCAAGATCACCATCATCACTAGGAAGGCCTACGGAGGAGCGTATGACGTCATGAGTTCCAAGCACCTGAGAGGAGATGTGAACTACGCCTGGCCGTCTGCAGAGGTGGCCGTGATGGGAGCCaaggtaacacaacacacacctgaGAGGAGATGTGAACTACGCCTGGCCGTCTGCAGAGGTGGCCGTGATGGGAGCCaaggtaacacaacacacacctgaGAGGAGATGTGAACTACGCCTGGCCGTCTGCAGAGGTGGCCGTGATGGGAGCCaagGTAACACAACACACCTTCTACACAAGACCAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743871 lncRNA downstream 24710 18201251 ~ 18202588 (-) True G1523073
TU1743884 lncRNA downstream 63333 18163214 ~ 18163965 (-) True G1523081
TU1743861 lncRNA downstream 113116 18113471 ~ 18114182 (-) True G1523063
TU1743854 lncRNA downstream 122286 18104619 ~ 18105012 (-) True G1523056
TU1743843 lncRNA downstream 139544 18084524 ~ 18087754 (-) True G1523045
TU1743930 lncRNA upstream 7094 18238518 ~ 18238736 (-) True G1523114
TU1743931 lncRNA upstream 7726 18239150 ~ 18239685 (-) True G1523115
TU1743932 lncRNA upstream 8497 18239921 ~ 18240135 (-) True G1523116
TU1743938 lncRNA upstream 21273 18252697 ~ 18253031 (-) True G1523122
TU1743918 lncRNA upstream 21791 18253215 ~ 18258328 (-) True G1523102
XM_036952113.1 mRNA downstream 59935 18160955 ~ 18167363 (-) True LOC110495700
XM_021571086.2 mRNA downstream 59937 18160955 ~ 18167361 (-) False LOC110495700
XM_036952114.1 mRNA downstream 59937 18160955 ~ 18167361 (-) False LOC110495700
XR_005037392.1 mRNA downstream 172944 18052305 ~ 18054354 (-) False LOC118941107
trnal-cag-26 mRNA downstream 185799 18041417 ~ 18041499 (-) True trnal-cag-26
XM_036952123.1 mRNA upstream 465 18231889 ~ 18237893 (-) True LOC110497068
NM_001124594.1 mRNA upstream 213659 18445083 ~ 18447303 (-) False ghs-r
XM_036951415.1 mRNA upstream 268402 18499826 ~ 18513863 (-) True LOC110497072
XM_036952138.1 mRNA upstream 364360 18595784 ~ 18603170 (-) True LOC118941108
XM_036952139.1 mRNA upstream 373173 18604597 ~ 18617046 (-) True LOC110495729
TU1743823 other downstream 173473 18051980 ~ 18053825 (-) False LOC118941107
TU1743824 other downstream 173473 18051980 ~ 18053825 (-) False LOC118941107
TU1743827 other downstream 173473 18051980 ~ 18053825 (-) False LOC118941107
TU1743828 other downstream 173473 18051980 ~ 18053825 (-) True LOC118941107
TU1743613 other downstream 482400 17741967 ~ 17744898 (-) True LOC110510546
TU1743984 other upstream 200669 18432093 ~ 18436052 (-) False G1523149
TU1743986 other upstream 200669 18432093 ~ 18436052 (-) False G1523149
TU1743987 other upstream 200669 18432093 ~ 18436052 (-) True G1523149
TU1744124 other upstream 214163 18445587 ~ 18446561 (-) True ghs-r
TU1744079 other upstream 309721 18541145 ~ 18541711 (-) True G1523234

Expression Profile