RNA id: XM_036952130.1


Basic Information

Item Value
RNA id XM_036952130.1
length 4421
RNA type mRNA
GC content 0.50
exon number 26
gene id LOC110497071
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18448434 ~ 18480492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAGGAATTGTTTCCACAGTACATTCGTTCACATACACTCTGTTATACAAGAGGAACGGTACACTGAGTGTGTATagggtgtgtagagtgtgtgtatgtttgtagtgtgtgcacatgtgtgtgttttgtctacTCAGTAGTCTAGAAGAGGGACAAATCAAAATGAGGACAGGAGCAGgTGTGCCCTGTTCTGACGGCTGAGAGCTAGGCATGCTGGataaagaccccccccccaccaccagcaGCCTTCAACTGACGACCTCTGACCCCTCTGACATTGCTGTGGAACCCGGTGACATCACAGACGGCCTCGGCATCAGCAGGAAGATGTCGGACGTAGTTGAGAGTTTGGACACCAGAGAGTTGGAcatgggagatggagaggagactgACAATGACCCTACCACcatagGGGACAGTCGTATAGGGTTCAGTGCTGTGTATCACACCGTGGGTTTTAAGGAGTCTGAAGCCAGGGTCTATCTCCCTACTGTCCCCATCACTGCTAAGATACTGGAGGTGGAGAGGTTCAACACAGCCCAGGACAGGTTCAACATCACGGCACAGAGGAGTGTCAACaagAGTCAGCCTGCAGTGTTTAAGATTGAGCTGAGACATGGAGAGTTCAGCTGGGTGGTCAAGAGAAAGGAGAAACACTTCATGGACCTCCACAGAGAACTGGTCCGATACAAGATGTTCATGAGGGTGCCGCTACCCTCCCGCagccacacaACGAGGAGGAGGACAATGAAGAAGAGTGAAGCCAGACATATGCCGGAGCTACCGCGTGGCGGAGATGAGTTGGCACAAGACGAACAGGTCTACAGCAGAAGGAAACAGCTGGAAGATTATCTGAACAAGCTTCTAAGGATGGCCATGTACAGGAAATACTACCACACTatggAGTTTATAGACGTCAGCCAGATGTCCTTCATCCATGACCTGGGACCTAAAGGACTGGAGGGGATGATACACAAGCGTTCCGGAGGTCATCGTATCCCAGGCTTGAACTGCTGTGGTCACAGTGAAGTCTGCTACCGCTGGTCTAAACGctggttGGTGATGAAGGATTCGTTCCTCTTCTACATGAAGCCAGACTCAGGAGCCATTTCCTTTGTTCTCCTGTTGGACAAAGAGTTCAGCGTCAAAATGGACTCCAAAGACACAGAGACCAAATACGGAGTACGCATCGACAGCCTCTCCAGGTGCCTTGTACTGAAGTTGAACAGCTACAGACATGCTCGGTGGTGGGGCCAGGCGATAGAAGACTTTGTCCGTAAACACGGGAGGGCGTTTCTACGAGACCATCGATTTGGTTCCTTTGCCCAGGAGGAGCAGAACATCCCTGCCAAATGgtatgtgAATGGGAAGACCTACATGGAGGACGTAGCCGATGCTCTGGAAGAAGCTAAAGAAGAGATCTTCATCACTGACTGGTGgttgagTCCAGAGATCTTCCTGAAGAGGCCAGTTGTGGAGGGAAACAAATGGAGACTGGACTGCATCCTCAAACGCAAAGCGcaacAGGGGGTTCATATCTTTGTGATGCTGTATAAGGAGGTGGAGCTAGCTCTGGGCATCAACAGTGAATACAGCAAGAGAACACTAATGCACCTGCACCCCAACATCAAGGTGATGCGCCACCCGGACCATGTGTCGTCGTCTGTCTACCTGTGGGCGCATCACGAGAAGATCATCATCATCGACCAATCGGTGGCCTTCGTTGGCGGGATCGACCTGGCATATGGTCGCTGGGACGACCGAGAGCATCGCCTGACAGATGTGGGGAGTGTGACACGCTCTGTTGCCCTGGAGATGGagcagTCTCAGAGCTCTGCCCACCATCCCTCCAGTAGGGGAGTGTCCTCTACTGATGGTGCTGCCAATAGCAACGGAGGCAACCAATCACTGCCTGGCAACCCAGGGGTGGAGCTTCCGCGGCTGAAGGGGATTGGTCGAACCAGGAGGATGCACTTCTCCCTAGTCAAACACCTCCACAAACACACTCTGCAGCATGCAGACAGCATCAGCTCCTTGGACAGCGctggcagtGGTTCAGTGCGGAGCCTCCAGACAGGTGTAGGAGAGCTGAGGGGTAACACCAGGTTTTGGCATGGAAAAGACTACTGCAACTTTGTCTACAAGGACTGGATACAGCTGGAGAAACCCTTCGatgacttcATTGACAGGTACACCACTCCCAGGATGCCGTGGCATGACATCTCCTCTGTGGTCCATGGGAAAGCTGCCAGGGACGTGGCCAGACACTTCATACAGCGCTGGAACTTCTGTAAGatAATGAAGCCTAAGTATCATTCTCTCTCCTACCCGTACCTCCTGCCCAAGTCTCACAGCAGTGCCAGTGAGCTGAGGTACCAGGTGCCCGACTGTGTTCCCACTAGAGTacagGTGTTGCGGTCAGCAGCTGACTGGTCAGCAGGTATTAAGTATCATGAGGAGTCCATCCACAACGCCTACCTCCAGACTATCGCCAGGAGCAAGCACTTCATCTACATAGAGaaCCAGTTTTTCATCAGTTGTTCTGACAACAAGATGGTCTATAACAAGATCGGAGAAGCGCTCATCGAGAGGATCCTCAGAGCTcataaGGAGGGCAAGAAGTTCCGGGTGTACGTGGTGACTCCACTACTTCCTGGGTTTGAAGGTGACATCACAACAGGGGGAGGAAACGCCCTCCAGGCCGTCATGCACTTCAACtacagGACCATGATCAGAGGTGAATACTCCATCATCTCCCAGCTGAAGAAAGAAAtggaTGAACTACAGTGGATGAACTACATCTCGTTCTGTGGTCTGAGGACCCACGCTGAGCTGGAGGGACGCCTGGTCACAGAGCTCATCTACGTCCACAGCAAGATGCTCATCGCAGACGACAACACCGTCATCATCGgttCGGCCAACATCAACGACCGCAGCATGTTGGGGAAGCGTGACAGCGAGGTGGCGGTGATCATTGAGGACTCTGAGACCGTTACCGCGGTGATGGACGGACATGAGTACCAGGCTGGACGCTACGCACTGGCGCTTCGTCTAGAGTgcttcagGACTGTCCTTGGAGCCCATATGGACACGACCATAGATGTGTCTGACCCTATCTCTGACCACTTCTACAAGGATGTCTGGATGACCACCGCTGGACGCAACGCAACCATCtatgagaaggtgttcCGATGCCTGCCGTCCTCCCTGGTTCGTAACATGTCTGAGTTAGAGAGTTACCAGACGAACCCAGGCCTGGCTCAGTCTGACCCAGGTAAAGCCCAGGAGGAGCTAAGGAGGATCAGAGGGTTCCTGGTTCAATTCCCTCTGGACTTCCTCTCAGAACAGAACCTAATGCCTTCTGTTGGGACCAAGGAGGGCATGGTGCCTACTGAGATCTGGACCTAGAGgactagatacacacacacacacatgactagacacacacacacacacaggactagacacacacacacacactcaggactagacacacacacacacacacaggacaagacacacacacacacagaccactgcATTGAAGTGTGGATCTTTAGACTGATCTCTGGACCTCCAGCTGATAGCTGACAACTTAAACCACAAACATGGAGGACCATGATGCCGCTTGGCCTGTCACATCCACAACTCAGCCAATGAGACTGATTGCCACGCGGACTAATGAGGAAGTAATCAGGAGGACACAACGCTACAGGATATTCAGATAGAAATATATTGTGTAGAGCAGATCATCACTTCTCATCATGTAGGATAGGGACCTGGTTAGCTCCACATgaatacatttctatctgcaaatGTATAGGTTTAGAATGTTTCACCTGACTGAATACACCTGAAAATGGGTGAAGAAAATGAGCACTTCAGTTCAAGTAGAACCTCCTTCATTTCTAAATGTTTTGTCCTGTTTTGTGCCTTCTGAAGGCGACCCTGGACACTCTCCTATGCCTGTCACCTACTCTGTTTGTTATGCATGTTCGTATGGTCGTAGCACTACGTAAGCTCACATACTGTCTTTAGCTGTAGGGCCTAAAGTTctgttattttctttattttctagaATAGAGGTTGCCTTTGAGAAGAAGACATGTAAATGTTTACAATCTAAGTATGGAACTGTTCTGTAAAATCGTAATTGTAAAACGAGGCTTTTAACGCTCGCCACGAATGTTATGTTAAGTGAAGCACAAAATGTCACTATAAACACTCACTGAATTTCAGCATGAATCACAACTACCTACAGCCTTCTGCCTTTAATACACCTGCTGTTCCATCACGCCTTGTAAGTATTTGTATTGCCTGATGTATACATAATGTATCATATTGCCTATTATATAATTAAATCATCAATCCCATcatttcaaaatacattttcaatataCTTGATAATAAAATCAACTTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007154 cell communication biological_process
GO:0035091 phosphatidylinositol binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01115 PLD1_2; phospholipase D1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743351 lncRNA upstream 45931 18392984 ~ 18411251 (+) True G1522632
TU1743411 lncRNA upstream 75288 18380682 ~ 18381894 (+) True G1522685
TU1743342 lncRNA upstream 158266 18296019 ~ 18298916 (+) True LOC110497069
TU1743360 lncRNA upstream 195126 18261812 ~ 18262056 (+) True G1522641
TU1743359 lncRNA upstream 195686 18261212 ~ 18261496 (+) True G1522640
TU1743344 lncRNA downstream 2703 18483195 ~ 18484626 (+) True tspan37
TU1743465 lncRNA downstream 21233 18501725 ~ 18502232 (+) True G1522725
TU1743444 lncRNA downstream 60666 18541158 ~ 18541702 (+) True G1522714
TU1743443 lncRNA downstream 61826 18542318 ~ 18544024 (+) True LOC110495722
TU1743447 lncRNA downstream 64172 18544664 ~ 18546925 (+) True G1522717
XM_036952127.1 mRNA upstream 24666 18309981 ~ 18432516 (+) False LOC110495706
XM_036952128.1 mRNA upstream 24666 18309987 ~ 18432516 (+) False LOC110495706
XM_036952129.1 mRNA upstream 24666 18310161 ~ 18432516 (+) True LOC110495706
XM_036952125.1 mRNA upstream 151945 18296423 ~ 18305237 (+) False LOC110497069
XM_021571100.2 mRNA downstream 285 18480777 ~ 18484624 (+) False tspan37
XM_021571101.2 mRNA downstream 285 18480777 ~ 18484624 (+) False tspan37
XM_021571102.2 mRNA downstream 285 18480777 ~ 18484624 (+) False tspan37
XM_021571103.2 mRNA downstream 285 18480777 ~ 18484624 (+) False tspan37
XM_021571104.2 mRNA downstream 285 18480777 ~ 18484624 (+) False tspan37
TU1743410 other upstream 76924 18379087 ~ 18380258 (+) True G1522684
TU1743080 other upstream 596568 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 613168 17839669 ~ 17844014 (+) False G1522437
TU1743460 other downstream 113842 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 235370 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 478952 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 541513 19022005 ~ 19022395 (+) True G1523506
TU1744469 other downstream 645772 19126264 ~ 19130785 (+) True G1523526

Expression Profile