RNA id: TU1743344


Basic Information

Item Value
RNA id TU1743344
length 1282
lncRNA type sense_over
GC content 0.38
exon number 2
gene id tspan37
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18480777 ~ 18484626 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgtgtcctctccctcaGGGCTGCCAGGTGAAGCTGGAGGAGGCCTTGCTTTTTGTTCTGCATCTCATCGTCTGGTCATCTCTGGCAGTGGCGCTAGTGGAGactGTAGGGTTTGTGAGTGTGGCTCAGCTGATGAGGGACCAGCCTCTGTTGGAGTATGGAATACTGGACAGGGAGTATGGAATACTGGACAGGGAGTGGGCCTGAACCAGAGTCTCAGTCCAGAATACTTTCTGCCAATCTACTTTAGATATACTATGTCCTGGACCTTGGTAAAGTTAATGATGCTGTGgaccttaaaggcccagtgcagtcaaaaatgtgttggtttttttttgtgtgtttttttttttttctccagtgttttatatcatatttccacactgaggttggaagaatactatgaaattgtgaaaatgctgataatgcccttttagtgtaagcgCTGTTTGAAGACTGCTCTCTAGTGGTTGGTTCTAGTTGTCTGTGCAGCTCCAGGGCCCCTAGGGTACCATTACAGGTAATTGACGTAATCATCCCCGATCTTGTTGGTGAAGCTACTTTAAAAGAGTGATTATCTTGCTTTCACTAAACTAATGTATACACATCTGTGAAGGAAGATGTACTCTAAAAGTGTCCTACACTTCTGCATACACTTCCTTCGTTTCAAAAGGATCAACTGGAATATGTAATGGCcacaatgtttttgtttttgttcacTGATGTAGATGCATGCTTGTTAAAGAAACCACTCCATCAAAAACAATTGTCAACATGTCACATGTCCTGCAGATGACATATGAATGATTAATTTTTACACTGCCCTGCATGGCTTTTGAGTAATTAACTTGTTGAAACTATGTTGTGTGGCTATTGTTTGATTGTAGTTTACCCCTATGTAGCTGGGTGATTCTGCAATTTAGGGCACTTTGGCCCTGCAAGCTTTCAGAAATGAAAAGTTATTGAAACACCATTTTTACCAGTATTATAATTCTTTGATTTGTCTAGAAAATATCTGATAATGGCTGCTATCGTCCTATTCAGGAATGTAGATATTTTtctcagacagccatagacacaTTTTATTTCCATCATGTCATTAAACATCAATTTTTGTTAAAAATGAAGTAATTAATTTAACACATTTCTTATACATTTGTGTATTGAGTATTTTAAGAGATTTAAGGTTTTCCTAATATGAATAATTCAACACGACGCCTGAATTTATAGACTTGCCTTTGTGACAGCTGAAAAAGATAATAAAAATAAGATGTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743446 lncRNA upstream 9196 18472780 ~ 18473999 (+) True G1522716
TU1743356 lncRNA upstream 10571 18463922 ~ 18472624 (+) True G1522637
TU1743437 lncRNA upstream 14706 18467509 ~ 18468489 (+) True G1522708
TU1743436 lncRNA upstream 23958 18458691 ~ 18459237 (+) True G1522707
TU1743351 lncRNA upstream 71944 18392984 ~ 18411251 (+) True G1522632
TU1743465 lncRNA downstream 17099 18501725 ~ 18502232 (+) True G1522725
TU1743444 lncRNA downstream 56532 18541158 ~ 18541702 (+) True G1522714
TU1743443 lncRNA downstream 57692 18542318 ~ 18544024 (+) True LOC110495722
TU1743447 lncRNA downstream 60038 18544664 ~ 18546925 (+) True G1522717
TU1743449 lncRNA downstream 86143 18570769 ~ 18622066 (+) False LOC110495726
XM_036952131.1 mRNA upstream 2703 18448434 ~ 18480492 (+) False LOC110497071
XM_036952130.1 mRNA upstream 2703 18457182 ~ 18480492 (+) True LOC110497071
XR_005037400.1 mRNA upstream 4094 18457182 ~ 18479101 (+) False LOC110497071
XM_036952127.1 mRNA upstream 50679 18309981 ~ 18432516 (+) False LOC110495706
XM_036952128.1 mRNA upstream 50679 18309987 ~ 18432516 (+) False LOC110495706
XM_021571091.2 mRNA downstream 4096 18488722 ~ 18498859 (+) False elavl1a
XM_021571094.2 mRNA downstream 4097 18488723 ~ 18496849 (+) False elavl1a
XM_021571093.2 mRNA downstream 4098 18488724 ~ 18496849 (+) False elavl1a
XM_021571095.2 mRNA downstream 4101 18488727 ~ 18496849 (+) True elavl1a
XR_002469465.2 mRNA downstream 57272 18541898 ~ 18544024 (+) False LOC110495722
TU1743410 other upstream 102937 18379087 ~ 18380258 (+) True G1522684
TU1743080 other upstream 622581 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 639181 17839669 ~ 17844014 (+) False G1522437
TU1743460 other downstream 109708 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 231236 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 474818 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 537379 19022005 ~ 19022395 (+) True G1523506
TU1744469 other downstream 641638 19126264 ~ 19130785 (+) True G1523526

Expression Profile