RNA id: XM_021571091.2


Basic Information

Item Value
RNA id XM_021571091.2
length 5348
RNA type mRNA
GC content 0.44
exon number 7
gene id elavl1a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18488722 ~ 18498859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATAATCTGCAGAGGTGGGCGTGGATCTGCTTTCGTCAGCGGTCCTCTTGGTTTTGGTGCCTGCAAGAAGGAGCtgtcagctaacgttagctagctaaaaaaaaaacacgGAACGATTGACAGACAAGAACAGCGAAAGCACCAACGACAAAAAGCTGCTTTGGGAGCAGTGAGGGGTCTTCATGGCTGTTCGAAGAGGCCACATCAGGTACCTAAAAgagGTGTATGACATGTCCAACGGCTACGAGGATCACatgggaggaggagatgaggtgaCGGATGCCAAGACCAACCTGATAGTCAACTACCTTCCCCAGAGCATGAGCCAGGACGAGCTACGCAGCCTCTTCAGCAGCATTGGCGAGGTGGAGTCCGCCAAGCTCATACGGGACAAAGTGGCAGGTACGGAACACCTTGTCCCACAATGCACTACAGGCCACAGTTTAGGGTACGGATTTGTTAACTATCTTACCCCTAGCGATGCAGAAAGAGCTATCAATACTCTGAATGGACTAAGGCTACAGTCTAAAACTATCAAGGTTTCATATGCGCGGCCGAGCTCTGACACCATTAAAGACGCCAACCTGTACATCAGTGGCCTGCCCAAGACCATGACCCAGAAAGACGTGGAGGACATGTTTGCTCGCTACGGACGCATCATCAACTCCCGTGTGCTGGTCGACCAGGCCTCGGGCCTGTCTCGGGGGGTGGCGTTCATCCGGTTTGACAAGCGAGCGGAGGCCGAGGACGCCATCAAAGACCTTAACGGACAGAAACCCCCCGGATCTGCCGAGCCAATCACAGTGAAGTTTGCTGCCAGTCCCAACCAGGCCAAGAACACTCAGCTCATATCGCAGCTCTACCACAACCAGGGACGCCGCTTTGGAGGGCCAGTTCACCACCAGGCTCAGAGattcagGTTTTCTCCGATGTCTGTGGACCATATGAGCGGTATGTCTGGGGTGAGTGTGCCGGGGAACGCCACCTCTGGCTGGTGCATCTTCATCTACAACCTGGGCCAGGACGCCGATGAGGGCATCCTGTGGCAGATGTTCGGGCCCTTCGGCGCCGTCACCAACGTCAAGGTCATCCGCGACTTCAACACCAACAAGTGCAAAGGCTTCGGCTTTGTTACCATGACGAACTACGAGGAGGCCGCCATGGCGATCGGCAGCCTCAATGGTTACCGCCTCGGGGACAAGATCCTACAGGTGTCGTTCAAGACCAGCAAAGGCCACAAGTAGAGAGaaatagtggggggggggggggcctcacACCAGGCTTCTAATATGGAGGGTAAATTGCCACAGTTTGACAAAACAAACGTGTTTTTAGCGTTATCTCACTAAGCCCATTCTCACTCTGCATCTTTGTACTAGTCTAACAGAGAGTCTAGGCTGAGTGTGATACttctcgttttttttttttttttactcatgaTTTGGGATGTTCCAAACGCAGTTATCAATGTCCATCCTGATATGGTGACCAATTTCACAATTTAAGACTAGAGTGTTTTTCCTGTGAGAATTAACTAGTGTCACTATGTGCCATATGAATGGTAGGACCACGGTAGGGACTTGGAGAAGGATGTGCTACAGTCATGCGTCTAGTCCCCCACTGTAGGAGGAAGCATGCTGTCTTAGACGCTGGTTCCAGTGTAGAAATAGATGCCTTAAGTTACCACCCTGTCAAACCATCCACTGCCTCCAGCCATTCTAAAAGAAAAGCCCTTTTTAAATCCTTATTGTATAATGTCAGCCGTTTTGACGTAAACCATGCATTGGTCTTCTCTCACCTTGCAGAATCAGTTTTATACACAGCAAGTTAGGTACTGAATGGTACCATTACATAGCAGCGCGTGTGTCCCGTTTTTGGGGGTCTTTTAACAGTTGAATCTCTGAGAGGCCATGTAAAAAGGTCTGGAGATTTTAAAGTAGGAAAGTGTATAAGAAGGACCAAAGAAATGGAAGGATATGCTCTAACTGCCCCAGGGCCCGTATTCacatgctgatctaggatcagtttggccttgtcgatcctagatcagcattcagTCCTCTGAGAAGCTTTTGTGAATAGGGAAAGATGCTTACTGTTATGACTCATTTCCCCTCACCAGTAATAGTTTGGGCATCTGAACAACCGGTACGAAGGCTGAATCTAACACAGTGAAgcaacactgctctctctctcatccagttttctgtttttgtaaaaaaaaaaaaaaaaaaaaagttgtcaaTCTTTTGATGTTTTTCTTGAATTTTCTTTCTGAGAGACTAACTTTCCTTTTTTCGTCGAAGCGTAGATTACTGATCGGAGAGTTGGAAGAGTTTTTATTTAAGTTTTTATGCTCATCTCGAGCTAAAGAAGAATTTATGGCCTTTGTGATTTTATTTTTGTTGGTATAGATTTGTTTTGATTGTTTTACTTTGCAATCATTAAATGTTTATTTAGATTTGACTCAACGTTTTGGTTTTGTTTCTTTTATTTCTTCAGATTTGGTTTGGGATTTTTCGTTGGGGTTTTCTGTTTAGATTGTAGAGCTACAGACACCAGACTGCTAATATGATGATGCTACAGTATGACACTACTCACCGCACTCCCATTGAGATATTACAGGACGTTTGAATGGTCAACATAAGGTTTAGCTAGACTCCAAGATGGTCTGAAGGCCAAGAGGATGCAGTCTCCAGTATAAAACACCTCAGACGTTGGCCTTATTTTCATTCAAACTTATGTGTGAAACATGAGGCAGAGGGCTTTCAGGGTTTCAAAGATGGGAGTCCTTCATGTTAATAGGATCTAGAAGTTactgatcaaatcaaagtttttgtcacttgcgccgaatacaacaggtgtaggtagaccttacagtgaaataattacttacaggctctaaccaatggtacGGGGGGGAAAAGGCGCGTGTGTAGGTAAGTGATGAAACCCATAAGGAGTCTTCTAATACAGGTACTGCAGGAGGCAGTTTGTCACTTATGGACCTTCTTTGATCTGCCTTGCAGCCAACAAACACAGTCACCCTGAGAAACTGTGCctctttttttaatataaatgtgCAATAACCTAAAAGAGGGTAAAAAAAACAGCTAAACCCAGGCATTTTCAAGTGATGTTTTTAGACTTAAAATAAGAGGACTTTGTAATCGGGAAGAAGACTGCCGGTTGGTTTGACATCAAGCGAATATTCCTACATCTGTTTTTAACATATCTTGGTTGTGCACTTTTCATCACCAAGGCCTTTTCTATGTAGGTTTGAGAATGTAGTCTGTTGGAGAGAAAATAACTGACTACAGCAGCACCACAACACGGGATCAGACAACTGGCTTTAGTTAGTTTCCTGCTGCAGCAGATCTAGGATCCGTTTACCCTTACACAGTCCTAACCTTCACCATAATGGGTGACAATTGTTTTAGAAAATTAGGGCCTTGTCTCCTGGACTTTCAatagagattctccattgagcatgATTTTATGTCCAGGAGTAGGCTTCATCTGGGTTCTGGGAACAGCCTAGAAACCAGACTGAAACGGTACTAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGGGGTTATTCTGAACTGGAAACGTTACTAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGAGTGGTTATTCTGAACTGGAAACGTTAATAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGATAGTGGTTATTCTGAACTGGAAACGTTACTAGAGATAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGAGTGGTTATTCTGAACTGGAAACGTTAATAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGATAGTGGTTATTCTGAACTGGAAACATTACTAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGTGGTTATTCTGAACCGGAAACGTTACTAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACTAGAGAGTGGTTATTCTGAACCGGAAACGTTACTAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACTAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACTAGAGAGTGGTTATTCTGAACCGGAAACGTTACTAGAGAGTGGTTATTCTGAAACGGAAACGTTACCAGAGAGTGGTTATTCTGAACTGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACTAGAGTGGTTATTCTGAAACGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAAACGGAAACGTTACCAGAGAGTGGTTATTCTGAACTGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGTGGTTATTCTGAAACGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGTGGTTATTCTGAACTGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACTGGAAACGTTACTAGAGAGTGGTTATTCTGAAACGGAAACGTTACCAGAGAGAGTGGTTATTCTGAACCGGAAACGTTACCAGAGAGTGGTTATTCTGAACCGGAAACGGCACTGGAGGGGGAGTGGTTATTCTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743344 lncRNA upstream 4096 18483195 ~ 18484626 (+) True tspan37
TU1743446 lncRNA upstream 14723 18472780 ~ 18473999 (+) True G1522716
TU1743356 lncRNA upstream 16098 18463922 ~ 18472624 (+) True G1522637
TU1743437 lncRNA upstream 20233 18467509 ~ 18468489 (+) True G1522708
TU1743436 lncRNA upstream 29485 18458691 ~ 18459237 (+) True G1522707
TU1743465 lncRNA downstream 2866 18501725 ~ 18502232 (+) True G1522725
TU1743444 lncRNA downstream 42299 18541158 ~ 18541702 (+) True G1522714
TU1743443 lncRNA downstream 43459 18542318 ~ 18544024 (+) True LOC110495722
TU1743447 lncRNA downstream 45805 18544664 ~ 18546925 (+) True G1522717
TU1743449 lncRNA downstream 71910 18570769 ~ 18622066 (+) False LOC110495726
XM_021571100.2 mRNA upstream 4098 18480777 ~ 18484624 (+) False tspan37
XM_021571101.2 mRNA upstream 4098 18480777 ~ 18484624 (+) False tspan37
XM_021571102.2 mRNA upstream 4098 18480777 ~ 18484624 (+) False tspan37
XM_021571103.2 mRNA upstream 4098 18480777 ~ 18484624 (+) False tspan37
XM_021571104.2 mRNA upstream 4098 18480777 ~ 18484624 (+) False tspan37
XR_002469465.2 mRNA downstream 43039 18541898 ~ 18544024 (+) False LOC110495722
XM_021571114.2 mRNA downstream 51181 18550040 ~ 18554461 (+) False LOC110495724
XM_021571113.2 mRNA downstream 51266 18550125 ~ 18554461 (+) True LOC110495724
XM_036952132.1 mRNA downstream 56696 18555555 ~ 18564107 (+) True diras1b
XM_036952137.1 mRNA downstream 71892 18570751 ~ 18579405 (+) False LOC110495726
TU1743410 other upstream 108464 18379087 ~ 18380258 (+) True G1522684
TU1743080 other upstream 628108 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 644708 17839669 ~ 17844014 (+) False G1522437
TU1743460 other downstream 95475 18594334 ~ 18595600 (+) True LOC110495728
TU1744253 other downstream 217003 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 460585 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 523146 19022005 ~ 19022395 (+) True G1523506
TU1744469 other downstream 627405 19126264 ~ 19130785 (+) True G1523526

Expression Profile