RNA id: TU1743451


Basic Information

Item Value
RNA id TU1743451
length 4390
lncRNA type read_through
GC content 0.42
exon number 9
gene id LOC110495726
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18570751 ~ 18622066 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACAGAGGGGGTGGCGTTTGATTCGGTAAAAACCGAGATTGAACGAACGGACTGTGTAACCGACGAAACTGCCCCTTTAAATCAGGAATACAGCGCATTCGGAGGAGGTGAAGGTTTACAGCTGACCATCTGACCTGAGGTCACAACCACTCCTGTCCATCTGACCTGAGGTCACAACCACTTCTGTCCAGCTGAGTGACCCAACTCACCTCATCAGTCCTTTCCCTGCACACACACCTGCCCTACCTGGTACACCTGGCTACCAACCCAACACACACCTGTCTGGCCCTTGGTGCAGACTGGCCCTCCGATCTGCACACCATCCgctagtGGGggagtgtgtattgatggatcaGGATGTCAACCAATAACAACATCGCGCAGGCCAGGAAACTGGTGGAACAACTGAGGATCGAGGCAGGGATCGAACGTATTAAGgtGTCTAAGGCAGCGGCAGACCTGATGAGTTACTGTGAGCAGCACGCCCGTAACGACCCGCTCCTCGTTGGCATCCCAACGTCAGAAAACCCTTTCAAAGACAAGAAACCCTGCATCATCCTATAGCTGCACACTCATCTCTgcacatcagacacacacacacacctctgcccacacacacactcccactggCTGACTCTGCAACAGCCAACAAGGCCCAGCTCTGTCAAGCtatacatacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaaacgaaATAGCCACTCTGGAAAAGCGCCATACTCAATAGCCACAGCTAGGGGGCGGTGTCTGTGTTTACAGACCACATTGCCACATTAGTGATATTAGCCCTGAGTTGTGTCTCTGTGGTGCTGAGGGTAAGCCTGCACTAACATGCAGCCCTAACTGATACTGGTTACTGACTCACCCACAGAGATAGTGACACTCAAGTGGAGATGACAGATTTACTTCAAAAAGGGATTAGGACAATTATCTTAATAGGAATCCACAGTCGCCTACATGAAGTTATAGGCTGATGTATAGCATGTATTTTAGTGAAtcaatgatttatttattcattGATTAATCGATTGATTGATAGCAGTATCTGGTGAGGTGGGGGTTTATGTGTGACCAATCTGGTGTAAAACCTGGGTCGTTTGTGTGATACAAGCTGTGTTAGCCCTCTCAGCTAAAGCCTAGCCATTAGCCATGGAAGTTAATataagtcttcaggtctcaggcatgGTTACCCATCACTAAACCACCGTGGCTATACACGGTGTGTTTGTTAGCCATATAGTGGCTGACTTGCCACTGACTTGCTAAGTATCACAATGGGGATGGCCCCTTCCTGAAACCTTGGGTCAACGGTAATGTCAGTGTTTCCACAAGACATTGTGTTTTTGTGAACATGGCATTGTAAACACTGAGCAGGTTGGTACATGCTGCATATGTACCCACTGTGTTTAAACCCGGATCATCTGCAAtgccacaagactgtgttagcccactgagctaaagcatAGGCTACATACACTCCCACTCTAGCGACGGTTATCGATCAACAGTGTTACTGCTTTGGTTTTGATTTCTTGGTCAGTGGGTTTTCTATAGGCCAAAACTCCAGCTGTGTCGACTTGTGGAGTAAGTTGCCCCTATatactgatctaagatcagtctTGTGTTTTCCCTCTAATGGTAAAGGTTAGGATTTAGAGAGGGTCATCTGATGCTAGATCTGTCTAAAAGGctgagtttacacaggcagcctaattcAGATCTTtgtccactaattggtcttttggccaatcagatcagctctttttcccaataattgggcaaaagattAGAATTTTGCTGCCCGTGTAAACACAGCCTAATGAAACTTCTATCTTGAGTACTGACGAGTACTGAGAGGCTAACTGTTCAAGTTTTTAACCCCAGaagtatatatatagtacatatatatatatatataatatatgtttttttaattaCTTATCGTTTCAATATTTTGTCAATTTATTGCCATATAGTTAGCAGATACTGTAGGTTTCCATTCACTCCTTAACTTACACTTGAGTCAAAAGTTTaccttaaccacagatctaggatcagattatcaTCCCCAATCTTAACTTGAATCATAAGGGGGGTGTACAAATATCTGATCCTATATCAGTGGTTAGATACGTCACTAGTTCTGACAATGAGAGCAAGCATCAATTCTTGGGCTTTGCTTATTGGCTCATCGTGTGTTCTATTGAGGAACAAGAGCGAATTACAAAGTGGTGTCCCGTGTCCCCACCTCCACAGTCCTATTCCTCTACTCCCAAACCAAACTTgattgtaaaaaatgtaaaagacactagagaaaataaaaacaaaagtgTATAAACTTTCTTTAAGCCATGTGCAGAAGTGATATGTTTTGAGAGTAGCTGTTTTGGGTTTGGTTTGAGTTTCTTTCTAAATGGAAGCAGGTCGGTCGAGTATTATTATCGAACTGTACAGTGTTTGTAAGATAAAACCTAGGCCAGAAATCAATCAAAGTGCATTAAACTTTTTCCACCCCAAAAAAACAAAATGCGCTTTAATTGAATGTCAGCCTGTTGCAGAATCTTTTCTGTGGATGTTCAATTTTTGCGTAAATGTTTCCCTTCTGTCAGAATTTTGTCTGTTTCCTCATTCAGCTTGAGGCaggttctctcacacacacacacacacacacacacacacacaatcccctaGTGACTAAATGGGGAGCCAACCACATCTACAAAGCAGTGAAGTGGCCGTACTCATAGCATAGCTTCTTATACACAGGCACAGCACTGTGAGAAACAAACTTGAACCATTaaatcactgtctctctctcacacgcacacagacagacacacacacagtttcctaATGTCTTTTAAAAGTGATTATCTGAGGGAGATTATTGTTATTCCTTAATTCATTCATTCCACGGACGGTTattttgattgattggttgattgatggtTTGccttgttgtggtgtattgtgttgtatgCTGGTTAGGACCAGGAGTTTTACCTGGTCAAGTCACATGGTCAGGAACAACATTCTAGCCCTAGACTTAAGAATAGTTGAGAGTATTTGAGTGAACAGTCTTAAAAGAGGACACAACGCTCTAGAATGGAAGTCTTGTGGTGCTCCCATTCCCACATCATTCACTATAGCTGATCTAGGTCAGTTTCAAGTTTTCTCCCCCTAAAGATTATGTCAGGATTTGGGGAATGGAATCTGATCATAGGTCTTACCCAGAGCAGAACGCTAGAACCCTAAAACAAATTTCTGTCCCTAAGACACTGATCTCAGGTCAGTTTTACCTGGACTCATCATTGTGTTTTTCTCTCCTgtgtatacatatacagtatgtatctctgGTAACGCTTTGTTTTTACAGTCTCCTTTAACTTGGTATTTGCTTATAAATAACATGGTAAAAACATGTGTTTCGTTGCAAGCGAGGACTATTTGGTCCCAGGTTGAAAGTCCCCATTGTTACCACAATGTGTTCCTTCCGGCTGGGACAGGGACTGTAAAGTCAAGCGAGGACTATTTGGTCCCAGGTTGAAAGTCCCCATTGTTACCACAATGTGTTCCTTCCGGCTGGGACAGGGACTGTAAAGTCAAGCGTTACCGTATCTTTCTGCCTTGATTAATTGTGAATGATCAGTTATTGATTATGAAGGAAATATAATATCTATTTTTTTGTATCTGGTCGCTCTGATGTGCCATAACTCATGTTTTCTTGCACACTGTTCATATTTTACAGTTAAATACTTTACTGTTCATATTTTACAGTTAAATACTTTACTGTTCATATTTTACAGTTAAATACTTTACTGTTCATATTTTACAGTTAAATACTTTACTGTTAAGACTTTACTGTTAATATTTTTTGTGGATATTGCTGTTAAAAAAAAGATGATATTGAAAAAGTAGACAACatgaataaaaatataataacGCCCTTgtgaaaaaaaaaaaaagatgacctggagccagtgggtctggcgacgaatatgtagcgagggccagccgactagagcatacaggttgcagtggtgggtggtataaggttatttggtaacaaaacggatggcactgtgatagactgcatccagtttgctgagtagagtgttggaagctattttgtagatgacatcgccgaagtcgaggatcgataagatagtcagttttacaagggtacgtttggcggcgtgagtgaaggaggctttgtgaaatagaaagccgattgtagatttgattttggattggagatgtttaatatgagtctggaaggagagtttacagtctagccagacacctaggtatttatagttgtccacatattctaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1743447 lncRNA upstream 23844 18544664 ~ 18546925 (+) True G1522717
TU1743443 lncRNA upstream 26745 18542318 ~ 18544024 (+) True LOC110495722
TU1743444 lncRNA upstream 29067 18541158 ~ 18541702 (+) True G1522714
TU1743465 lncRNA upstream 68537 18501725 ~ 18502232 (+) True G1522725
TU1743344 lncRNA upstream 86143 18483195 ~ 18484626 (+) True tspan37
TU1743504 lncRNA downstream 3243 18625309 ~ 18625721 (+) True G1522763
TU1743505 lncRNA downstream 4088 18626154 ~ 18626430 (+) True G1522764
TU1743506 lncRNA downstream 4527 18626593 ~ 18626838 (+) True G1522765
TU1743528 lncRNA downstream 29281 18651347 ~ 18672714 (+) True LOC110495730
TU1744241 lncRNA downstream 54190 18676256 ~ 18676471 (+) True G1523367
XM_036952132.1 mRNA upstream 6662 18555555 ~ 18564107 (+) True diras1b
XM_021571114.2 mRNA upstream 16308 18550040 ~ 18554461 (+) False LOC110495724
XM_021571113.2 mRNA upstream 16308 18550125 ~ 18554461 (+) True LOC110495724
XR_002469465.2 mRNA upstream 26745 18541898 ~ 18544024 (+) False LOC110495722
XM_021571095.2 mRNA upstream 73920 18488727 ~ 18496849 (+) True elavl1a
XM_036952141.1 mRNA downstream 34448 18656514 ~ 18672724 (+) False LOC110495730
XM_036952144.1 mRNA downstream 55059 18677125 ~ 18683024 (+) False LOC110495731
XM_036952143.1 mRNA downstream 55060 18677126 ~ 18682574 (+) False LOC110495731
XM_036952142.1 mRNA downstream 55060 18677126 ~ 18683346 (+) False LOC110495731
XM_021571123.2 mRNA downstream 55065 18677131 ~ 18683346 (+) False LOC110495731
TU1743410 other upstream 190511 18379087 ~ 18380258 (+) True G1522684
TU1743080 other upstream 710155 17856141 ~ 17860614 (+) True G1522438
TU1743076 other upstream 726755 17839669 ~ 17844014 (+) False G1522437
TU1744253 other downstream 93796 18715862 ~ 18718645 (+) True LOC118936474
TU1744394 other downstream 337378 18959444 ~ 18974004 (+) True LOC110495746
TU1744431 other downstream 399939 19022005 ~ 19022395 (+) True G1523506
TU1744469 other downstream 504198 19126264 ~ 19130785 (+) True G1523526
TU1744438 other downstream 553797 19175863 ~ 19176962 (+) True LOC118941116

Expression Profile