RNA id: TU1745332


Basic Information

Item Value
RNA id TU1745332
length 1667
lncRNA type read_through
GC content 0.55
exon number 7
gene id LOC110495742
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18882965 ~ 18904709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCCTCTACAGTGAAGGCCTGTAGGTGGGAGGCGCTGCCCATACGGTTGACTCCTGTGATGTTGAGCGTGTAAGACGTGTAGAGCTTTAAACCCTTTAGGACACAGAGCCACCTTGCCCCTGGAGAGGAGCCATTCACCCCAGGGAGAGAGGACTCTGGGCTGGGGAGAGGATGCACGGAGGTAGGGTAGGGATGGCACTGCTGGATCTCTCCGCCTTTCATACTAGGACATACGGAGAGATTAACTGAGAAAGGGGGATGTTTTGAGCGTCTATAAGCTTCTCTCTCaaactctttctcacacacacacacacaaacaaacagtgtaCCTGTAGGTGGCGATGTACTGTATGGGAAGCTGGGTCTGTGGAGGCTCAGGCCATGAGCAGAGGGCTTTGAAGGGGTAACTGGGAGACCAGCAACGTACctctggaggggagggggggtctgCCAGTGGCATAGGATACACACACTCAGAAGTCACCCCCAAATACActcaggggagagggagagagcagtggaaggggagagagaaaatgggaaAGTAGGAaataggggtggagaggggagggggcgagacagagaaaggaaagaaACAGGGGATGTGGAGATGGAAGGAAATGAGAGAAGATAGCTATTTTTAAGTATTCCAGACAGGTCCTCATTTCTGAGAATGCAGTCTCACCcctttctgctctgttctctcctgATGGAACCGTCAGAACCGTCCCATCGCTGCTGAGTACACCGCTGAGAAGAGtcaccacagcacacacacacagccagaatagaacacacacacaatgctggaCGTACATTCCTCTTATGTTAAGAACAGACAGGCtacagtgactgactgactgactgactgactgactgactgactgactgactgattatttTCCTTCCAGACGGTCAGTCTACTGGCTAGATGAACTCCCACCTGAAAGAAATGGCTCCACCCCCACGTTTGAGTTGACTCCCCACTGGTCCCAGCTGTGTGGCAGGAAGCGGCTTAATTCTGGGTTTGAACAGAGCAGGTTATCTCCCCAATGGGAGGTCAGTGTAGCAGCTTTGAGTGCCTATCCATCCAATAGACTGTGTTCTCTGGCTTTGCCCCGCCTCCCCACCATAGGCTGGGAACCTGACCGCCCCCTACTGGCCTCCctgagcAGAGCGGTGCAGACTGCAGTAGCCAGTCCTAGGGTCTGCCAGTTGGCCTGTCCCAAGCGGAGGCATGGTCTCTATTCGCCCCATTTGTCCAAGACCTCACTGGCACCCCCCCACCCAGCTGCAACCTCCTCCCGACTACAGCTCCTTGCCCTCCCTAAGTCTGACCACCCCCAGTATGCCCAGGACCGTCCAGTCATCTGGCCAGTACCTGGGCCAGTGAGGAAGGCAGTAGCCAGTGAGAGGGTGCAGGTCCTTTCACGGCCCAACCAGCGGAAGGCGCTGTTCCAAGGCTACAACCCGTACACGGTTACCCTAGCTGCACGCTCCGCTAGCGCCTCGCCGCGCCTACAGGAGCTTTGTCTGCCCCTGCCGCGGAAATGCAAGGGCAAATAGACGAATGCATCTCATCTCACACCTCTACAGTACCTCCAGCCGCCTCTTCTTCAGATACTCTGTCTCCTGTACAGCATGTCTATGTCCCTGATCACCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745415 lncRNA downstream 345 18882028 ~ 18882650 (-) True G1524367
TU1745414 lncRNA downstream 2183 18880612 ~ 18880812 (-) True G1524366
TU1745412 lncRNA downstream 4749 18877865 ~ 18878246 (-) True G1524364
TU1745411 lncRNA downstream 7491 18875284 ~ 18875504 (-) True G1524363
TU1745410 lncRNA downstream 8121 18874635 ~ 18874874 (-) True G1524362
TU1745446 lncRNA upstream 41010 18945719 ~ 18948078 (-) True G1524393
TU1745449 lncRNA upstream 44408 18949117 ~ 18949348 (-) True G1524396
TU1745450 lncRNA upstream 44825 18949534 ~ 18949771 (-) True G1524397
TU1745451 lncRNA upstream 47316 18952025 ~ 18952268 (-) True G1524398
TU1745453 lncRNA upstream 49533 18954242 ~ 18954476 (-) True G1524400
XM_021571135.2 mRNA downstream 4051 18863536 ~ 18878944 (-) False LOC110495738
XM_021571136.2 mRNA downstream 4051 18863536 ~ 18878944 (-) True LOC110495738
XM_021571137.2 mRNA downstream 8602 18863536 ~ 18874393 (-) False LOC110495738
XM_021571128.2 mRNA downstream 118562 18750769 ~ 18764433 (-) True LOC110495732
XM_036952140.1 mRNA downstream 239508 18629091 ~ 18643487 (-) True LOC110497079
XM_036951416.1 mRNA upstream 806 18905515 ~ 18907958 (-) True LOC110497081
XM_036952161.1 mRNA upstream 4297 18909006 ~ 18915687 (-) False crlf1a
XM_036952162.1 mRNA upstream 4297 18909006 ~ 18915688 (-) True crlf1a
XM_036952183.1 mRNA upstream 282698 19187407 ~ 19195604 (-) False acvr1l
XM_036952182.1 mRNA upstream 282698 19187407 ~ 19195633 (-) False acvr1l
TU1745358 other downstream 133600 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 315748 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 341284 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 436434 18445587 ~ 18446561 (-) True ghs-r
TU1743987 other downstream 446943 18432093 ~ 18436052 (-) True G1523149
TU1745534 other upstream 239276 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 668919 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 818036 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 818725 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1666387 20571096 ~ 20571867 (-) True LOC110497093

Expression Profile