RNA id: XM_036952159.1


Basic Information

Item Value
RNA id XM_036952159.1
length 1881
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC110495739
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18891721 ~ 18896278 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAGTCCAAATTAGGGCTAACTGTAGGGGTGCTCATGTTCCTGGGGATCAGAAGTGTCCAGAGGCAGGTTGAAGTTGCCATGATCAGAGTTGTACAGAaggtgtcatatgctgaggcagtgaagaaagtagaggaagatgtgTCAAGGGTAAGGGATCTAAGAGGCTCCAGACCCATGGCAAAGTGGTTAAAGGACTACCTGAACTTCGGCAGCCGTCGTGACGCCCCCCAGCTTCCGCATCCTGACAACACAGAGAGTGAGATCCTGAGGGCCTACAGAGCCCAGAAAGACCTGGACTTTGAAGACCCATACCAGAGCGCAGAGAAATCACAAAATGGCTGCTACGGTGGCTGTAGGGGGACAGTAAGCCTGCATGCGTTTCCCGCCTTGGCTTCTgtccttcccaacgatgcagaggtgaaggtGGTGTCTCCCAAACACAGGCTGATCAAGGTGGACTCTCAGGAATTCCGTCGCAGTAAGGTCCCCGTCAGCCCCGTCACCATCCACCAAGAACCGGTGCTTCCCTCTGCTCCTACAGTAGTAGGGGACTCCGACACCGACTACTCAGACCCGTTTGATGCCAGACCAGTTCCTCGGCTTAGAACAGATTGggagcctaaccctaacccacaccTTACCTTGGACCTCAGCCCCATCACCAGTCCTACCCTGGTAGCCTTCAGCCCTAACCCTATCCTAGGTCTCAGTCTCCGTCCAGGGCACAGCAGCAGCTACATGGAACCCTTTGAAGCCCAGAGGGTCATCACAGAGCTCCAGCGGGGCCGGCCAGGAGTGGGCAATGGAAGGTCAGGGGCTGGGATCGGAGATCAACTCTATGATGACCCCTACGATGAGAGGACTCGACATCGCCACCGGGGGGCGCCACCGCAGCAGCAGGGGAGAGAGTTCCTCAGGAACGAAACGagagaggtcagagagagcaGGCTGCCCCAGGACGATGAGAGACCAGCAGAGGAGTACGACCAGCCCTGGGAATGGAAGAAGGACAACCTCTCCAAAGCTCTAGCAGTGAAGTTTGAGGGGGCAGAGTGGGAGAAGTCGTTAGCCCAGTCAGACCAGGCCAGACTACCCAGGACCAGCCCCACAGCCCCAGGGGGCGCAGCTAGCCTTCTGAGGCCTGGTGACACCACCCCTGTCCTGGGTGAGAGAGTGGACCCCTGCCTGCCCCTGGAGAGACAGGTGTGGTACCACGGTTCTGTGAGTCGTGTGGAGGCAGAGACTCTACTGACGTTGTGCAAAGAGAGTTCCTACCTGGTGAGGAAGAGCCAGGCCTGCCCACAagactactctctctccctcagGAGTTGTCAGGGCTTCATGCATATGAAGTTCACTCGGAGTTCAGAGAGTCGTTACGTCCTGGGAGAGAACAGTCCTCCATTCTCCTCTGTACCAGAGGTCATCCACTACTACACCATGCACAAACTACCTATCAGAGGAGCTGAACACCTGTCTCTGCTCTACCCTGTCATAGTACAGACCCTCTGACCCTTCTCCACTCATTATCTGCatcccaactggcaccctattccctatgtagtgcactactttagtgcactctgatcaaaagtagtgctatATATAGGCAATAGAGTGGGACATGGCTATTTATGATACTAATACAGATGGTGTTGTCGTCTGCGGAAATGCTAACATGGCTGCTGTGGAATTGTGTGATGTTATTCTTAGAGCGTCAACATGGTTCTGGCGGAAACCACAATGGTTAAActattacagttgaagttggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtagaaatgccctgtcttaggtcagttaggatcaccactt

Function

GO: NA

KEGG:

id description
K23697 SHB_D_E_F; SH2 domain-containing adapter protein B/D/E/F

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745415 lncRNA downstream 9071 18882028 ~ 18882650 (-) True G1524367
TU1745414 lncRNA downstream 10909 18880612 ~ 18880812 (-) True G1524366
TU1745412 lncRNA downstream 13475 18877865 ~ 18878246 (-) True G1524364
TU1745411 lncRNA downstream 16217 18875284 ~ 18875504 (-) True G1524363
TU1745410 lncRNA downstream 16847 18874635 ~ 18874874 (-) True G1524362
TU1745446 lncRNA upstream 49441 18945719 ~ 18948078 (-) True G1524393
TU1745449 lncRNA upstream 52839 18949117 ~ 18949348 (-) True G1524396
TU1745450 lncRNA upstream 53256 18949534 ~ 18949771 (-) True G1524397
TU1745451 lncRNA upstream 55747 18952025 ~ 18952268 (-) True G1524398
TU1745453 lncRNA upstream 57964 18954242 ~ 18954476 (-) True G1524400
XM_036952158.1 mRNA downstream 5501 18882965 ~ 18886220 (-) False LOC110495742
XM_021571142.2 mRNA downstream 5502 18882965 ~ 18886219 (-) False LOC110495742
XM_021571143.2 mRNA downstream 5502 18882965 ~ 18886219 (-) False LOC110495742
XM_021571135.2 mRNA downstream 12777 18863536 ~ 18878944 (-) False LOC110495738
XM_021571141.2 mRNA upstream 2159 18898437 ~ 18902354 (-) True LOC110495741
XM_036951416.1 mRNA upstream 9237 18905515 ~ 18907958 (-) True LOC110497081
XM_036952161.1 mRNA upstream 12728 18909006 ~ 18915687 (-) False crlf1a
XM_036952162.1 mRNA upstream 12728 18909006 ~ 18915688 (-) True crlf1a
XM_036952183.1 mRNA upstream 291129 19187407 ~ 19195604 (-) False acvr1l
TU1745358 other downstream 142326 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 324474 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 350010 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 445160 18445587 ~ 18446561 (-) True ghs-r
TU1743987 other downstream 455669 18432093 ~ 18436052 (-) True G1523149
TU1745534 other upstream 247707 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 677350 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 826467 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 827156 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1674818 20571096 ~ 20571867 (-) True LOC110497093

Expression Profile