RNA id: XM_036952161.1


Basic Information

Item Value
RNA id XM_036952161.1
length 2288
RNA type mRNA
GC content 0.49
exon number 8
gene id crlf1a
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 18909006 ~ 18915688 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGAATGGATCTGACTCCTTGACGCATCACAGGccaagagatggggaggggggattGAAAAAGAGAGGAAAAGACTGGGGGGAAGAAAAAATTACTGGCGTTtgtgtgggaagagagaggaggagcttgAAAAGTATGAACTTGTGTGTGAagacgcagacagacagaagttGAAGCACTAGAATACTAAACGGAGGTTGGAAAAGCTCACGACTACCGATGGTCTCTTTAGAACCGGAGATGGTTTGCTATCAACTGATCAAATAATAGGTTCGGACGGAGCATGAAAGACTCCTCTTCTCGCATCTTCGGACTGCGGTGCTATTCAACTTGAACCCGTGCGGTCCCCTCCTAACCTGTGTAAATTATACTATATTAATATAAGCGTAAAAAGTGGAGAGTTTACCGACTGAACGAAAGAAGATAAAAGTTGCCATAAAATGTTGTCATTATTATTCTTGATTCTGTACATTCCTGCTGTTATGTCCTCATCGTCACagaTGGCTGGGATCTTCCCCCAGGACCCAGCCCTGCCCATCGGCTCCACCCTCACTGCCACATGTTCAGTCAGCCCTGATCTGGGCCTCCACGCCAGCTCTCTGTTCTGGAGCCTGAATGGCCGCCGGCTGCCCAGCTCTTCCTACAGCGTGTTGAGCCCTACGGCCCTCAGTGTCACCCTGCCGGGCCTGCCAGCCTCTAGGCAGAGGTCAGGGGACAACCTGGTGTGTCACAACCATGGAGGACATGTTCTGGCCGGGTCCTGCCTCTACATTGGGATGCCTCCAGTGAAGCCAGTCAACTTAACCTGCTGGTCCAGAAACACCAAAGACCTGACCTGTCGATGGGCAccgggaggacagggagagacctTCATCAAGACCAAATACACACTCAAATACAAACTCAGgtggtatggcagagagagagaatgtgaggagTACAATGCCGCCCAGCCGTACTCTTGCTACATACCTCGTGACCTCGCCCTCTTCACTCCCTACGAGATTTGGGTGGAAGCCACCAATCAGCTCGGCTCAGCCACCTCTGATGTCATAACCCTGGATATCCTAGACGTGGTAACGACGGACCCGCCGTCAGGTGTGAGTGTGAGTCGTGTGGGTGACCTGGAGGACCATCTGAGTGTTCGATGGGAGTCTCCCCCAGCTCTCAAAGACTTCCTGTTCCAGGCCAAGTACCAGATACGCTACCGGCTGGAGGACAACTCAGACTGGAAGGTCATGGAGGACGTTGGGAACCAGACATCATGTCGCCTGGCAGGCCTGAGACCGGGTACTGTGTATTTTGTCCAGGTGCGCTGTAACCCAGTAGGGATCTTTGGGTCTCGTAGGGCTGGTATCTGGAGTGAATGGAGCCATCCTACTGCTGCTTCTACACCTCATAGTGAGCGTGTATTATCAGGTTCGTGTGACTCCAAGTCTGGAGACTACAATTCTACGTTACGTCGAGAGCTGAAGCAGTTCTTCGGCTGGGTACGGAATCATGCGTATGGCTGCGGCGGCATGTCAATCAAACTCTACGACCAATGGAGAGTCTGGATGCAGAAGAGCCACAAAACACGCAACCAGgtcctaCAAGGGGATAAGTCATAGTACGCATCCCCCCTGCCTTTAAACAACCAGCAACAAAGTCAAGACAACGTCATGTGTGTGAAAAATGGTTTCCCCTAAATGCTGTGGTTTTGCATACACCATTCAGCGACGGAAGAAGGGGGCATAAGTACAATTTTGGGGACAGTGTCTCTACAACAGCAGCCCTAGGCTATGCTGTAATTATTTAACAAGACATGGAGGAATAAGAAGTTGAGGAATAGCGATCTTCTTCTTACTGTGGAAATACTGGCAGCTCTGAAAAGCTAGAGATCCACAGCACCCTCTAGTGGAAGCTAACATACTGGGAGGAACAGTGGAGACGGAGGACCATAGTAATGTTTCTAGTCACATCCCAGTCTTAAACCATGACGACCCAATTGGAACTGTCTGTGACCCAATATTTGGGAACCCTGTCTGGGGGGGGCACCGTTACAAGACTATAGACTGACATTGttgtctgtatcagtgtggagATCTGTCTTAATAACAAGTAGggtcaggagtttttcctgatcatAATGCTAATGTTTACCTGTGGAGGCGGTTCACCATCTATATTTTTGTACTATCGTATTTAAATACTGTCTTATTTAAACTATTATGTTTTGTTAGTAAGTTATGTTAGGTTAGTGATCATGTTATTGACTTAATTATGAATTATAGTTTTGTTTGAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745332 lncRNA downstream 4297 18882995 ~ 18904709 (-) True LOC110495742
TU1745415 lncRNA downstream 26356 18882028 ~ 18882650 (-) True G1524367
TU1745414 lncRNA downstream 28194 18880612 ~ 18880812 (-) True G1524366
TU1745412 lncRNA downstream 30760 18877865 ~ 18878246 (-) True G1524364
TU1745411 lncRNA downstream 33502 18875284 ~ 18875504 (-) True G1524363
TU1745446 lncRNA upstream 30032 18945719 ~ 18948078 (-) True G1524393
TU1745449 lncRNA upstream 33430 18949117 ~ 18949348 (-) True G1524396
TU1745450 lncRNA upstream 33847 18949534 ~ 18949771 (-) True G1524397
TU1745451 lncRNA upstream 36338 18952025 ~ 18952268 (-) True G1524398
TU1745453 lncRNA upstream 38555 18954242 ~ 18954476 (-) True G1524400
XM_036951416.1 mRNA downstream 1048 18905515 ~ 18907958 (-) True LOC110497081
XM_021571141.2 mRNA downstream 6652 18898437 ~ 18902354 (-) True LOC110495741
XM_036952159.1 mRNA downstream 12728 18891721 ~ 18896278 (-) True LOC110495739
XM_021571139.2 mRNA downstream 13261 18891721 ~ 18895745 (-) False LOC110495739
XM_036952160.1 mRNA downstream 14323 18891721 ~ 18894683 (-) False LOC110495739
XM_036952183.1 mRNA upstream 271720 19187407 ~ 19195604 (-) False acvr1l
XM_036952182.1 mRNA upstream 271720 19187407 ~ 19195633 (-) False acvr1l
XM_021571148.2 mRNA upstream 271720 19187407 ~ 19200058 (-) False acvr1l
XM_021571150.2 mRNA upstream 271720 19187407 ~ 19200059 (-) True acvr1l
XM_021571154.2 mRNA upstream 406969 19322656 ~ 19339854 (-) False LOC110495751
TU1745358 other downstream 159611 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 341759 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 367295 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 462445 18445587 ~ 18446561 (-) True ghs-r
TU1743987 other downstream 472954 18432093 ~ 18436052 (-) True G1523149
TU1745534 other upstream 228298 19143985 ~ 19164126 (-) True G1524473
TU1745684 other upstream 657941 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 807058 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 807747 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1655409 20571096 ~ 20571867 (-) True LOC110497093

Expression Profile