RNA id: XM_036952175.1


Basic Information

Item Value
RNA id XM_036952175.1
length 3426
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC118941114
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19139399 ~ 19148567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catgtgttatttcatagtgttgatgtcttccctattctGCCctcccaagcaaaaaggcagtaactgctcatttggtcaAAAATTAGTTCATGTCATTTTTGTTAGATTAAATgcatgcttaatcatgtggacaagtatcctgcctctattgtattgtgttttggagaaaatggggtTTACCTTTGTATCATATCATTTTATTCTGTGATGCAATCGAACCTGTAtgacactgacctacacacacataccttgCTAATCTAGGGATACAACTCCATGGAACAGCATTCCCGGGGGTTAAATGATGGTTGAACTTGCTCTGAAACGCCGACATCCAGACAGACACTGttgagtttgagggccacATTCCAACAAAGATTCCTGATCTACCCCCTTTAACTGAAGTCACAGTGTCAACACTACTTGAAGAAATAGAGAACCAGTGGGTGGTCTCTGACAGACTTATTGTTAGCTAGGAGGAAGACATGGAGGGTTCAACGCTGACACAGAGGAGGGCTGAGTGTCAGTTGAAGGATAGGGAGATCCAGACAGACTACATGATGGAGCTGGGAGCCAGGTTGGTTCTGGTGAGACAGatccagagggagcaggagaaggagatgaagaggaTTTGGTTTGAGACGAGGAAAATGCCAAGCCTGATTGAGGAGAATGTGAGAGATGTGACCAAACGTCCACTCACTGAGTTCATGGCTCCCTGTATTGACTCCCTCCCACCACTGGCTTTCACCAATCGGAGGCCAATACCAACCATGTTGCATCCCCCCTCTCCATTGGTCATACGCACTCAGGATGCACAGCGATTCATTGTATTTTCCTACTTTGTCCCTGCTGAGTGCCCAGTTTCCACAGAGGCCACAGCAGATGTATCTGCTGGTAGAAGAGAGGACTTGTCGACAGATACACATCTTTCCTCAATGCTGCATCGATACCTGCCACACTTCTTTAACGATGACTCCATTCCACCACAGCAGACAGTAGAGGGAACCACTGAGGACTCAGATTCTCCAGTGGCAATATCTAATATCAAGGAAGAGGACAGATTctatcctttctccctcccaccaCTGGCTCAGCGGTTCATTGGCAATTCATTCAAAGTCCCGGAAACCTCCCAGCCTGCTGTTTCAGCCACGGAGTGCCGAGTTGCCACAGTGGACACTGCAGATACAGCCACTGTCAAGAGAGAGAACCGATGGGCAGCTACAATTCTTCCTTCAGTGCTGCCTCCATGCCTGCCACCAGTCGTTGACGATGACTTCATGCCTCCAGAGCACACAGTAGAGGAATCCTATGTGGTCTCATTTGCTACAGAGGCCACTTCAGGCACAGCTACTGTTGATGGAGTGGACAGATCAGCAGCTAAATGCCCTGTCCCAATGCTGCCTCCAAGTCTGCCACGTGTCTTTGACGACAAACTGCCAGGGGCGGCAGTAGAGGGAACCAACAAGTGTCCAGTTGCCAGTGAAACAACCAATGATGTGTCCACTCACCTCAAAGAGGACATGGGAGCTGATCAAAGCCCTCCTGACCCTGCAGCACTGCCTCCAAGCTCGCCATGCATCTGTGACTCTGACCACAAACTGACCAAGGAGGAAAAAGAGGATGTACCCGAGTCCTCCCTTGCCACAGAGATCGCTGTAGGCACATCCATTGTCCAGGGAGAGGACCTGGATAAAAGCCCTGCTCCAAGGCTGCCTCCAAGCTTGTCACACGTTttggacaatgaccataagcagcCAGAGGAGACGATAGAGGAAGCCACTGAGTGCTCAGTCGCCGCAGAGGCATCAGTTGCTAATAGAGAGGATCCATCAGCAGCCACAGGTCTTCCCTTAGTGCTGCCTTCAAGCCTGCAACTTGTCTTTGACAATGACTACAAACTACCAGAGGAGGCAGTAGAGGGCACCAGCAAGTGTCCAGTTGCCCGTGAAGCAGTCGCTTCCGTGTCCACTGTCCTCCAAGAGGAGTTTTTGGCTGAAAAAAGTCCTCCTGCACCCACAGCACTGTCTCTAAGGCTGCCCTGCACCCACAACATTGACCACAAACAGCCAGAGGAGACCGTTGAGAACACCACAGAGTGCTCAGTTGACATAGAGGAAAGTGCAGTTGCATCCACTGTCAAGAGAGAGGAAATGATGGGTGATAAAAGCCCTGTCCATGCACATCCTCCAAGCCTGGCATGCATCCATGACAAGGACCCCAAGCAGCCAGATCAGAAAGGAAGGGGCACTACTGTGGAGGTGGATATCTGCCCTCACGCTCAACAGCTGGTCTCAGATGCTAACTTAACTCTGGCAACCCGCAATGATGAGCTGCCCAACCCTCTGATCTGCGTAGTCACTAAGATGCCTGTTAGAGTTGGAGCATCCATATGCAGGACAGAGGATGAGGAACCCAGGCCCTGGACCCTGGAAGAGGTAAAGGATCATTGGATAGGCATTGAAAttgagagtgaagagaggagcgTCACTGAGGAGGTGAGCCCGAGGGAGGGATTGAAGAGTGAGGCGGATTGTGCCCATTCCAAGTGCTCTATTGGGAAGGTTTCAACAGAGAGAGCAGAAACCATCCTGGGAAGAGTGGGCTTTCTGCTCATGAACCAAATGCAGAAAATCCCATTTTTGAAGATGGAGGAAAAAGAGAAAAATAAGAAACTGAATAAGAAGTTGaaagatgaagagaaagagagaaaggagataaaACACAAGGAGGAGGAgcaaaaaaagagggagaagaaagagatgaaggagagagagaaagagcagaagaaAGTCATGAAGGctgagaagaagagggagaagttagaacagaaaaagagagagaaggaaagaaaagagaaggaaaaggCAGAGAAAAAGAGGTTAGAGGGGCTGATGAAGATACATAATGACATGATGAAAGACAGAATTAAGAAAGAGAAGAAGTGTTCTGAGGagctgaaaaagagagagaaagctcaaGCTGCATtcttggagatggagagaaagattcaagaaaaggaggagaagaagagagaaaagatgaggagagaggagaggaagagactggaGGAGAAGAAAAAGAGGGAGCCAGCTGGAGGTGGAACTGAGACGGTGATAGAAGAGCAGGGAAGGGATGAAAGCTTGAAGATGGATGAGTAGACTGGGTAAtagagagtagggagggagggatatggtATTTTTGCATGCAATGAAAGAACTaagcatttaaaaataaaataaaaaatgtttactcTGTTTGATTTTTGTTAAGCCATACTGTACAACACTGTATAAACACAAAATGTTGACTTTTCACACATCTGGGGAGTGTTTAATGATGAGGAGTTGAGGAAGAACAGGGGGGGAGTTGGAGGGTGGAGAGGAATATGATACAGAGGAATTTGATAGAAGGAAtatgatattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744463 lncRNA upstream 10924 19102579 ~ 19128475 (+) False G1523526
TU1744452 lncRNA upstream 87363 19051566 ~ 19052036 (+) True G1523517
TU1744420 lncRNA upstream 147814 18991315 ~ 18991585 (+) True G1523498
TU1744410 lncRNA upstream 182028 18957019 ~ 18957371 (+) True G1523488
TU1744409 lncRNA upstream 183187 18955909 ~ 18956212 (+) True G1523487
TU1744488 lncRNA downstream 52535 19201102 ~ 19202089 (+) False G1523542
TU1744490 lncRNA downstream 52535 19201102 ~ 19202188 (+) True G1523542
TU1744522 lncRNA downstream 87119 19235686 ~ 19235905 (+) True G1523570
TU1744523 lncRNA downstream 88487 19237054 ~ 19265291 (+) True G1523571
TU1744529 lncRNA downstream 102368 19250935 ~ 19255872 (+) True G1523575
XM_036951420.1 mRNA upstream 5726 19128009 ~ 19133673 (+) True LOC118941066
XM_036951418.1 mRNA upstream 20637 19113019 ~ 19118762 (+) True LOC118941065
XR_005037403.1 mRNA upstream 34045 19101854 ~ 19105354 (+) True LOC118941113
XM_021572932.2 mRNA upstream 59784 19077110 ~ 19079615 (+) True LOC110496918
XM_036952173.1 mRNA upstream 74515 19055649 ~ 19064884 (+) False LOC118941112
XM_036952177.1 mRNA downstream 5387 19153954 ~ 19163071 (+) False LOC118941115
XM_036952178.1 mRNA downstream 6139 19154706 ~ 19163071 (+) False LOC118941115
XM_036952176.1 mRNA downstream 7843 19156410 ~ 19163071 (+) True LOC118941115
XM_036952179.1 mRNA downstream 20116 19168683 ~ 19177819 (+) False LOC118941116
XM_036952180.1 mRNA downstream 20882 19169449 ~ 19177819 (+) False LOC118941116
TU1744469 other upstream 8614 19126264 ~ 19130785 (+) True G1523526
TU1744431 other upstream 117004 19022005 ~ 19022395 (+) True G1523506
TU1744394 other upstream 165395 18959444 ~ 18974004 (+) True LOC110495746
TU1744253 other upstream 420754 18715862 ~ 18718645 (+) True LOC118936474
TU1743460 other upstream 543799 18594334 ~ 18595600 (+) True LOC110495728
TU1744438 other downstream 27296 19175863 ~ 19176962 (+) True LOC118941116
TU1744489 other downstream 52460 19201027 ~ 19202089 (+) False G1523542
TU1744498 other downstream 57665 19206232 ~ 19207234 (+) False otomp
TU1744499 other downstream 57665 19206232 ~ 19207234 (+) True otomp
TU1744577 other downstream 228500 19377067 ~ 19378472 (+) True G1523614

Expression Profile