RNA id: XM_036952178.1


Basic Information

Item Value
RNA id XM_036952178.1
length 3796
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118941115
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19153954 ~ 19163071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGTTATTTGAACCCATAACGTTACACCACACACGATCTCTAGCCAGCTGACGGTCAGTTGGACGTGCACCCCATACTGAGCTGTCAAAAGCCACCCACACTCGTTTTCCggatgagcgcacacacacagcattgctagctcattaataatatatatactCACATGTTCAGGGTTTCTGGTTTTCTTTTATATTCCAGTATTGCGTGACTGTCCTGGTCAGGAAAGTTAAAATCTCAAATTGTATCCATCACCTTTGTTGGTGGAATATGTAATTAGTACAACAAGCTTTGACATACCAAACGTGTGCTCAATGTGTCTGCTTCAGTGCCATCATTACATGAATGCGGAAAAAACTGTTTTGCATGACTTCCACCAATTCCCGTGGTCTACATGATTAGTATCTATGCGGAACAAAGTTGCCATGTGAGGGTGTATTAGGACAGTCCAACCACGTCAACACTAGATCTTATTCCTGTCAATGTCCAACCATgcaatttttttgtatttgtaagGAAAAATGAAAATGTAAGAGCCTTTTTGGGAGCAGGTATGAAATTAATAGATGAACTGAGTTATGACAGTGAAAATGATTATGATAATGTTTGCACAAGATAAAATCAACATTGATTATATCCTATATTATAGAATAACTGAAAAGGATTATGATCAtatgtttgaaaatgtcagtattaATTATTATCATCCATGACAGAATAGAATCATTAGGATGCAGGTCCCTGATTATTTGCTCTGTTTATttcagttgagtttgagggccacATTCCAACAAAGATTCCTGATCTACCCCCTTTAACTGAAGTCACAGTGTCAACACTACTTGAAGAAATAGAGAACCAGTGGGTGGTCTCTGACAGACTTATTGTTAGCTAGGAGGAAGACATGGAGGGTTCAACGCTGACACAGAGGAGGGCTGAGTGTCAGTTGAAGGATAGGGAGATCCAGACAGACTACATGATGGAGCTGGGAGCCAGGTTGGTTCTGGTGAGACAGatccagagggagcaggagaaggagatgaagaggaTTTGGTTTGAGACGAGGAAAATGCCAAGCCTGATTGAGGAGAATGTGAGAGATGTGACCAAACGTCCACTCACTGAGTTCATGGCTCCCTGTATTGACTCCCTCCCACCACTGGCTTTCACCAATCGGAGGCCAATACCAACCATGTTGCATCCCCCCTCTCCATTGGTCATACGCACTCAGGATGCACAGCGATTCATTGTATTTTCCTACTTTGTCCCTGCTGAGTGCCCAGTTTCCACAGAGGCCACAGCAGATGTATCTGCTGGTAGAAGAGAGGACTTGTCGACAGATACACATCTTTCCTCAATGCTGCATCGATACCTGCCACACTTCTTTAACAATGACTCCATTCCACCACAGCAGACAGTAGAGGGAACCACTGAGGACTCAGATTCTCCAGTGGCAATATCTAATATCAAGGAAGAGGACAGATTctatcctttctccctcccaccaCTGGCTCAGCGGTTCATTGGCAATTCATTCAAAGTCCCGGAAACCTCCCAGCCTGCTGTTTCAGCCACGGAGTGCCGAGTTGCCACAGTGGACACTGCAGATACAGCCACTGTCAAGAGAGAGAACCGATGGGCAGCTACAATTCTTCCTTCAGTGCTGCCTCCATGCCTGCCACCAGTCGTTGACGATGACTTAATGCCTCCAGAGCACACAGTAGAGGAATCCTATGTGGTCTCATTTGCTACAGAGGCCACTTCAGGCACAGCTACTGTTGATGGAATGGACAGATCAGCAGCTAAATGCCCTGTCCCAATGCTGCCTCCAAGTCTGCCACGTGTCTTTGACGACAAACTGCCAGGGGCGGCAGTAGAGGGAACCAACAAGTGTCCAGTTGCCAGTGAAACAACCAATGATGTGTCCACTCACCTCAAAGAGGACATGGGAGCTGATCAAAGCCCTCCTGACCCTGCAGCACTGCCTCCAAGCTCGCCATGTATCTGTGACTCTGACCACAAACTGACCAAGGAGGAAAAAGAGGATGTACCCGAGTCCTCCCTTGCCACAGAGATCGCTGTAGGCACATCCATTGTCCAGGGAGAGGACCTGGATAAAAGCCCTGCTCCAAGGCTGCCTCCAAGCTTGTCACACGTTttggacaatgaccataagcagcCAGAGGAGACGATAGAGGAAGCCACTGAGTGCTCAGTCGCCGCAGAGGCATCAGTTGCTAATAGAGAGGATCCATCAGCAGCCACAGGTCTTCCCTTAGTGCTGCCTTCAAGCCTGCAACTTGTCTTTGACAATGACTACAAACTACCAGAGGAGGCAGTAGAGGGCACCAGCAAGTGTCCAGTTGCCCGTGAAGCAGTCGCTTCCGTGTCCACTGTCCTCCAAGAGGAGTTTTTGGCTGAAAAAAGTCCTCCTGCACCCACAGCACTGTCTCTAAGGCTGCCCTGCACCCACAACATTGACCACAAACAGCCAGAGGAGACCGTTGAGAACACCACAGAGTGCTCAGTTGACATAGAGGAAAGTGCAGTTGCATCCACTGTCAAGAGAGAGGAAATGATGGGTGATAAAAGCCCTGTCCATGCACTTCCTCCAAGCCTGGCATGCATCCATGACAAGGACCACAAGCAGCCAGATCAGAAAGGAAGGGGCACTACTGTGGAGGTGGATATCTGCCCTCACGCTCAACAGCTGGTCTCAGATGCTAACTTAACTCTGGCAACCCGCAATGATGAGCTGCCCAACCCTCTGATCTGCGTAGTCACTAAGATGCCTGTTAGAGTTGGAGCATCCATATGCAGGTCAGAGGATGAGGAACCCAGGCCCTGGACCCTGGAAGAGGCAAAGGATCATTGGATAGGCATTGAAAttgagagtgaagagaggagcgTCACTGAGGAGGTGAGCCCGAGGGAGGGATTGAAGAGTGAGGCGGATTGTGCCCATTCCAAGTGCTCTATTGGGAAGGTTTCAACAGAGAGAGCAGAAACCATCCTGGGAAGAGTGGGCTTTCTGCTCATGAACCAAATGCAGAAAATCCCATTTTTGAAGATGGAGGAAAAAGAGAAAAATAAGAAACTGAATAAGAAGTTGaaagatgaagagaaagagagaaaggagataaaACACAAGGAGGAGGAgcaaaaaaagagggagaagaaagagatgaaggagagagagaaagagcagaagaaAGTCATGAAGGctgagaagaagagggagaagttagaacagaaaaagagagagaaggaaagaaaagagaaggaaaaggCAGAGAAAAATAGGTTAGAGGGGCTGATGAAGATACATAATGACATGATGAAAGACAGAATTAAGAAAGAGAAGAAGTGTTCTGAGGagctgaaaaagagagagaaagctcaaGCTGCATtcttggagatggagagaaagattcaagaaaaggaggagaagaagagagaaaagatgaggagagaggagaggaagagaggagaggagaagaaaaagaGGGAACCAGCTGGAGGTGGAACTGAGAGGGTGATAGAAGAGCAGGGAAGGGATGAAAGCTTGAAGATGGATGAGTAGACTGGGTAAtagagagtagggagggagggatatggtATTTTTGCATGCAATGAAAGAACGaagcatttaaaaataaaataaaaaatgtttactcTGTTTGATTTTTGTTAAGGCATACTGTACAACACTGTATAAACACAAAATGTTGACTTTTCACACATCTGGGGAGTGTTTAATGATGAGGAGTTGAGGAAGAACAGGGGGGGGAGTTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744468 lncRNA upstream 12531 19101756 ~ 19142175 (+) False G1523526
TU1744462 lncRNA upstream 13041 19100769 ~ 19141665 (+) True G1523525
TU1744463 lncRNA upstream 26231 19102579 ~ 19128475 (+) False G1523526
TU1744452 lncRNA upstream 102670 19051566 ~ 19052036 (+) True G1523517
TU1744420 lncRNA upstream 163121 18991315 ~ 18991585 (+) True G1523498
TU1744488 lncRNA downstream 38031 19201102 ~ 19202089 (+) False G1523542
TU1744490 lncRNA downstream 38031 19201102 ~ 19202188 (+) True G1523542
TU1744522 lncRNA downstream 72615 19235686 ~ 19235905 (+) True G1523570
TU1744523 lncRNA downstream 73983 19237054 ~ 19265291 (+) True G1523571
TU1744529 lncRNA downstream 87864 19250935 ~ 19255872 (+) True G1523575
XM_036952175.1 mRNA upstream 6139 19139399 ~ 19148567 (+) False LOC118941114
XM_036952174.1 mRNA upstream 6139 19141855 ~ 19148567 (+) True LOC118941114
XM_036951420.1 mRNA upstream 21033 19128009 ~ 19133673 (+) True LOC118941066
XM_036951418.1 mRNA upstream 35944 19113019 ~ 19118762 (+) True LOC118941065
XR_005037403.1 mRNA upstream 49352 19101854 ~ 19105354 (+) True LOC118941113
XM_036952179.1 mRNA downstream 5612 19168683 ~ 19177819 (+) False LOC118941116
XM_036952180.1 mRNA downstream 6378 19169449 ~ 19177819 (+) False LOC118941116
XM_036952181.1 mRNA downstream 8009 19171080 ~ 19177819 (+) False LOC118941116
XR_005037404.1 mRNA downstream 19347 19182418 ~ 19184256 (+) True LOC118936408
LOC110497082 mRNA downstream 21224 19184295 ~ 19186194 (+) True LOC110497082
TU1744469 other upstream 23921 19126264 ~ 19130785 (+) True G1523526
TU1744431 other upstream 132311 19022005 ~ 19022395 (+) True G1523506
TU1744394 other upstream 180702 18959444 ~ 18974004 (+) True LOC110495746
TU1744253 other upstream 436061 18715862 ~ 18718645 (+) True LOC118936474
TU1743460 other upstream 559106 18594334 ~ 18595600 (+) True LOC110495728
TU1744438 other downstream 12792 19175863 ~ 19176962 (+) True LOC118941116
TU1744489 other downstream 37956 19201027 ~ 19202089 (+) False G1523542
TU1744498 other downstream 43161 19206232 ~ 19207234 (+) False otomp
TU1744499 other downstream 43161 19206232 ~ 19207234 (+) True otomp
TU1744577 other downstream 213996 19377067 ~ 19378472 (+) True G1523614

Expression Profile