RNA id: XR_005037327.1


Basic Information

Item Value
RNA id XR_005037327.1
length 548
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC118941045
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19203536 ~ 19205195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagggtgttctgtctgtctggggaatggactcaggaggagagtggagggtgttctgtctgtctggggaatgGACTCAGAAGGAGAGTGgagggtgttctgtctgtctggggaatgGACtcaagaggagagtggagggtgttctgtctgtctggggaatgGACtcaagaggagagtggagggtgttctgtctgtctggggaatgGACTCatgaggagagtggagggggcagagagaatGACATCACTCAACGGACAGGGGAACAGAATATGACGGACCGAAGGTGGCCTTCTATGCGGCTTTGACTGATTCAGGAGCAGTAGGACCCTTCAGTTCTGAAACCAATCTGATCTACATCAAAGTCTTCACCAATATAGGCAATGCCTTACCGCCAACATACAGGTGCCTTCACAGCACCGGGGAGAGGAGTCTACTACTTCAGCTACACTGCCTCTGATCATCGAAATAactttttttaattacattttttcagtcggataaacactccaaacagcctacccgaccgctctGAGGCgcccgcatggtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744490 lncRNA upstream 1348 19201102 ~ 19202188 (+) True G1523542
TU1744488 lncRNA upstream 1447 19201102 ~ 19202089 (+) False G1523542
TU1744468 lncRNA upstream 61361 19101756 ~ 19142175 (+) False G1523526
TU1744462 lncRNA upstream 61871 19100769 ~ 19141665 (+) True G1523525
TU1744463 lncRNA upstream 75061 19102579 ~ 19128475 (+) False G1523526
TU1744522 lncRNA downstream 30491 19235686 ~ 19235905 (+) True G1523570
TU1744523 lncRNA downstream 31859 19237054 ~ 19265291 (+) True G1523571
TU1744529 lncRNA downstream 45740 19250935 ~ 19255872 (+) True G1523575
TU1744545 lncRNA downstream 82202 19287397 ~ 19287613 (+) True G1523590
TU1744546 lncRNA downstream 83285 19288480 ~ 19288702 (+) True G1523591
LOC110497082 mRNA upstream 17342 19184295 ~ 19186194 (+) True LOC110497082
XR_005037404.1 mRNA upstream 19280 19182418 ~ 19184256 (+) True LOC118936408
XM_036952179.1 mRNA upstream 25717 19168683 ~ 19177819 (+) False LOC118941116
XM_036952180.1 mRNA upstream 25717 19169449 ~ 19177819 (+) False LOC118941116
XM_036952181.1 mRNA upstream 25717 19171080 ~ 19177819 (+) False LOC118941116
XM_021570527.2 mRNA downstream 969 19206164 ~ 19211574 (+) False otomp
NM_001124192.1 mRNA downstream 1047 19206242 ~ 19210668 (+) False otomp
XM_021571152.2 mRNA downstream 57971 19263166 ~ 19286263 (+) True LOC110495749
XM_036952184.1 mRNA downstream 90324 19295519 ~ 19321171 (+) False LOC110495750
XM_036952185.1 mRNA downstream 90324 19295519 ~ 19321171 (+) True LOC110495750
TU1744489 other upstream 1447 19201027 ~ 19202089 (+) False G1523542
TU1744438 other upstream 26574 19175863 ~ 19176962 (+) True LOC118941116
TU1744469 other upstream 72751 19126264 ~ 19130785 (+) True G1523526
TU1744431 other upstream 181141 19022005 ~ 19022395 (+) True G1523506
TU1744394 other upstream 229532 18959444 ~ 18974004 (+) True LOC110495746
TU1744498 other downstream 1037 19206232 ~ 19207234 (+) False otomp
TU1744499 other downstream 1037 19206232 ~ 19207234 (+) True otomp
TU1744577 other downstream 171872 19377067 ~ 19378472 (+) True G1523614
TU1744614 other downstream 236850 19442045 ~ 19444309 (+) True LOC110495755
TU1744679 other downstream 301197 19506392 ~ 19507256 (+) True G1523703

Expression Profile