RNA id: NM_001124192.1


Basic Information

Item Value
RNA id NM_001124192.1
length 1460
RNA type mRNA
GC content 0.52
exon number 11
gene id otomp
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19206164 ~ 19211574 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCTCCACTGTAGCATTCAGTTGGAGTGTGTCTCGTGTGAGAGGGGAGATTTTGTCTTcacagtgtgtgtttgagagagaggagatttCGTCTTcacagtgtgtgtttgagaggaGATTTCGTCTTCACAGTGTGCgtttgagagagaggagATTTCGTCTTcacagtgtgtgtttgagagagagaagatTTCTCCGATTTTGTCAGTCAACATGGATCGTCTGGATAGAAGGCTGGCCAtgactcttctcctcttctcattcATCTCGTTCTCCACTCAGAAAACCTCAATCTCCTGGTGTGTAGTGTCGGAGGCAGAGGAGCAGAAGTGTCTGGATCTGGCTGGGAGTGCTACAGCCCGGAATATCAGAGGAACGCTGCTGTGCGTCCGTGGCCAGAGTCCCACAGACTGCATGGAGAAGATCAAGAATGGTACAGCGGATGCAGCAGCCATGTTTGCTGATGATATCTACACAGCTGGCTGGTGCTTTGGACTAGAACTGGCTGCTGGAGAGTCTTACAATGGAGTGGATGGTATCAGCTACTATGTTGTAGCTCTGGCTCGTCGCTCCTCCAGTGACCTGTCCCTGTTGGAGATGCATGAACGCAGCTCCTGTCACCCAGGGATCCGTACCACGGTGGGCTGGACTGTTCCTATTGGCTTCCTGGTCAACACCTCACAGATCAGTGTCGATGAACAATGCAACTTTCCTAAAGCGGTGGGGGACTTCTTTGGCTACAGCTGTGTACCAGGAGTAAAGGACAGAGAACACGACCCCAGAGGAAGCAACCCTAAGAACCTGTGTGAAGCCTGCATAGGAGACGACAACGAGAGACATATATGTGTTAACAATCACCGAGAGAGACACTATGGAGAGGCTGGGGCActgagGTGTGTGGCTGAGAATTTGGGCGATGTGGCATTTGTCAAACACACCACCATTTTTGACAACATGGATGGCAACAATATGGAATCATGGGCCATGGACCTGGAACTGGAGGACCTGAAGCTGCTGTGCCCGGATGGCAGCGAGGCCGGGCCGTTTGACCATGAGACGTGTCACCTGGCTGTGGTACCAGCTAACGCTGTGGTGGTACGCCCAGAGGACAAGTGTAGAGTCTGGAAATACCTGGAACGCTTAcagaATGCGTTTGGGAACACCACCATGTTCAGCTCAGTGGGCTACACCCAATCAGATCTCCTGTTTTCTGACTCCACCCACCACCTGCTCAGGGTTGTGGGTAGTTACACTTCCTGGTTGGGTCCCTCATACACCACGGTCCTGCAGGCCTTCGAGTGTGAAAGTTTGTGCTGATCCTTCTAGAAAGAAATCAACCAgcatcctctccatctctaccctcactatctctccacctctttctttcCCTACCTCCATATCGTATCCTCCCTCCCGCCATACCcacctcccttccttcctccatcctcccctccctccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744490 lncRNA upstream 4054 19201102 ~ 19202188 (+) True G1523542
TU1744488 lncRNA upstream 4153 19201102 ~ 19202089 (+) False G1523542
TU1744468 lncRNA upstream 64067 19101756 ~ 19142175 (+) False G1523526
TU1744462 lncRNA upstream 64577 19100769 ~ 19141665 (+) True G1523525
TU1744522 lncRNA downstream 25018 19235686 ~ 19235905 (+) True G1523570
TU1744523 lncRNA downstream 26386 19237054 ~ 19265291 (+) True G1523571
TU1744529 lncRNA downstream 40267 19250935 ~ 19255872 (+) True G1523575
TU1744545 lncRNA downstream 76729 19287397 ~ 19287613 (+) True G1523590
TU1744546 lncRNA downstream 77812 19288480 ~ 19288702 (+) True G1523591
XR_005037327.1 mRNA upstream 1047 19203536 ~ 19205195 (+) True LOC118941045
LOC110497082 mRNA upstream 20048 19184295 ~ 19186194 (+) True LOC110497082
XR_005037404.1 mRNA upstream 21986 19182418 ~ 19184256 (+) True LOC118936408
XM_036952180.1 mRNA upstream 28423 19169449 ~ 19177819 (+) False LOC118941116
XM_021571152.2 mRNA downstream 52498 19263166 ~ 19286263 (+) True LOC110495749
XM_036952184.1 mRNA downstream 84851 19295519 ~ 19321171 (+) False LOC110495750
XM_036952185.1 mRNA downstream 84851 19295519 ~ 19321171 (+) True LOC110495750
XM_021571161.2 mRNA downstream 196976 19407644 ~ 19414042 (+) False LOC110495753
XM_021571162.2 mRNA downstream 196976 19407644 ~ 19414042 (+) True LOC110495753
TU1744489 other upstream 4153 19201027 ~ 19202089 (+) False G1523542
TU1744438 other upstream 29280 19175863 ~ 19176962 (+) True LOC118941116
TU1744469 other upstream 75457 19126264 ~ 19130785 (+) True G1523526
TU1744431 other upstream 183847 19022005 ~ 19022395 (+) True G1523506
TU1744394 other upstream 232238 18959444 ~ 18974004 (+) True LOC110495746
TU1744577 other downstream 166399 19377067 ~ 19378472 (+) True G1523614
TU1744614 other downstream 231377 19442045 ~ 19444309 (+) True LOC110495755
TU1744679 other downstream 295724 19506392 ~ 19507256 (+) True G1523703
TU1744791 other downstream 540064 19750732 ~ 19754018 (+) False LOC110495769
TU1744790 other downstream 547647 19758315 ~ 19761020 (+) True LOC110495769

Expression Profile