RNA id: XM_036952187.1


Basic Information

Item Value
RNA id XM_036952187.1
length 6021
RNA type mRNA
GC content 0.42
exon number 2
gene id LOC110495751
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19322656 ~ 19384501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAACGTCTGCATGCCTTTTACGACATTTCGCCGTGCATGTGATTTGCATATCGGATCATGTAAAATGCCAACTCTCAAGTGCCAACGATTGCAGAAAATAGTTAGCTAGAGTCgttatcgtttttttttttttaggtgctTGTGTTTGTCTTGTTCCTTTCTAAACCTGATCACACTGCGTCTGGTGTGGAGAGAGGAATAGCAGACCGTAGACAGTGGGATAGGTGTGCAGTTGCAACAACAAGCTTTGGATCGTGtgagatgttttttttctctttatatcaaatcaaaccaaCAGCTTCAATTGCTACCTGCAGAAGCAAACAAAACTGTTGTTCATAGAATAACATAACAGACTTCGTTGGTTTGCATCCTCTGGTTTACACCGCACCCTTTCTGTTCAGATACAGTTCAGAGAAAATGGCGGAACTTGAGAAGGAAGGACTGAACCAAACAATGCATGAGAACCGAGATGAAGATGAGCCCCATTATACTGATGACTCTAAAACAAGCAAGATTCAGGACGACGCAAGTTTCGAGGAAAAGCTAATTGAAGAGGTCAGAAGGCAGAGGAGATGGACACCTCAGAAGACCTGCAAGATGACAACCTGATCGAGGGGGAACACTTCCACAGTTCTAATAATGAGCAGCAAGATGGACATTTGGCAGTTAGAAGGAATGTAATATTAGAACGAACAAAATTCAACCAAAGACAACAAGAAGCAGGAGAGACAGCTGATGATTTTATCTCTGCACTTCATTGTTTGTCAGAACATTGTGGTTATGGAGCTCTGCTCAGTGAGATGATAAGAGACAGACTAGTCGCAGGCTTACTTGACAGGAGACTGTCCAAGCAATTACAAATGGACCCAGAACTCACACTGGATAAAGCTGTCACACGCATTCGTCAAACTGAAATTGTGGAAAAGCAACAGGACCTGCAGGAGAATATCTTCAAAGCTGCCAGCAGCACGGAAAATGAAGACCGTGTGCTTTCACATAGCAAACATCAATGCCCAGCCAATGTCCAGTGCCAATCAGAGAAGAATCAAAACTCAGAAAGACCACAACAACACCAAACAATGCAGAAGAATGCAGAAGATCCCCTAGATACTGATGACACTGATGGCTTCAGTACTGGAGGAGAAAAGCCTCACTACTGCGCCTACTGCGGTAGGAGCTTTCAAAAAGTGAGGGATCTTATAAGACACCAGCGAACGCATACCGGAGAGAAGCCTCACCACTGCCCTGATTGCGACAGAAGTTTTGCTCGATTAGATAAGCTTAAATTACATCAGCGAACACATACTGGAGAGAAGCCTCACCACTGCCCTGATTGCGACAGAAGTTTTGCTCGATTAGATAAGCTAAAGATCCACCAAGAAATACATATAGGAGTGAAGCCTCACAACTGCCCTGATTGCAACAGAAGATTTGCTCGATTAGATAAGCTTAAGTCACACCAAAAAATACATGCAAAAGACAAACACATATTTCACTCCTCTGACTGTGCGAAAAGCTTTGTCTTATTGGAGAAGCTTGAAAAACACCAGCTGGACAATACCTTCAAAGCTTCCAGCAGTGCATCCAATGTAGATTGTGTGCTCACACAGCAGAGAACATTCAGCAAAGTCAGAGAGAGTAAAAGGCAGCAGAGTAAAATACGAGCTAGAGCTCCAGGAAAGAGAACACCAACACATAGCAAAAAAATgcaggagaaggaagaggagccCCTAGATACTGATGACTCTGATGAGTGGATCGAAGGTTTCAGTCCTGGAGGAGAGAAGCCTCACTACTGCTTTGACTGCGGTAAGAGCTTTAGAAAAGTGAGGGATCTTATAAGACACCAGCgaacacatacaggagagaagcctcacCACTGCCCTGTTTGTGACAGAACTTTCGCTAGATTAGACAAACTTAAATTACACCAAGAAATACATACAGGAGTGAAGCCTCACCACTGCCCTGATTGTGAGAGAAGTTTTGCTCGATTAGATAATCTTAAATTACACCAAAAAATACATATAAAAGAGGAACATAATGTTACACTGAACCATCAAACTGAAATGAATGTAGACTGTGTGCACACACAGCAGGGAACAGCCAGCAGAGGCAGGCAGAAGAGTAAAATGCGAGCTAGTGCACCAGGGGAAAAAATGGGCCAGTCACATCCAGGCAAAGACTCCCCTTACGAAAGTTCAGTTCGAAAGAATCGACACTCAGAAAAACAGCGACTACCCCAAACAACGCAGGTGAATGAAGAGGATCCTGAAGATACTTCTGATAACTGGACAGAGAGTTTCAGTACTGTAGAGAAGCCATACATCTGCTCCGACTGCGGTAAGAGCTTCAGACTAGAGAATCGTCTTATAAGACATCAGCgaacacatacaggagagaagccttacgaCTGCCCTGACTGTGACAAAAGTTTTGCACGATTAGATCATGTTAAGTCACACCAAAAAACACATATGAAGGAGGAACGTAATTTCCGCTGCTCTGACTGTGTGAAAAGCTTTGTCCGATTGGAACAGCTTGAAAAACATCAGTTAACACACAAGAAAAGTTACCGCTGTTCAAAGTGTGATGAAAGGTTTTCAGACCTGGTTGACTGGAAAGCACACTTTTTAGTACACCGAGAGATCCTCCACTGTCCTGACTGTAACAAGCAGTTCTTGTACAAGGGACTTTTTGAAAGACACAGGAGAACACatttgagaaaaagagagaaatttCTCTGCACAATATGTGGAAAGGAGATTCACAACTTTAAAATACACATGCGAgtacacacgggagagaaaccaTATCACTGCActgagtgtgggaagagttttgcatATACAAAATCGTACAAATCACATATACTAACACATACCTCTGGTGAAAGAGCAACCTTTCCTTGTTTGGAATGTGGAAAGACTTTTACTCGCAtagatggcatggtgagacacgTGAGGAGGGTTCATACTGGAGAGAGAAATCATCAGTGCGGAGACTGTGGAAAACGATTCTTTCGAAAAGAGTCACTGAAGAGACACAGTCTtgttcacactggagagaaaccataCCAATGCTCTATCTGTGGGCAACGCTTCTCCCAAGATGGCGACAGAAAACGGCACGAGAAGAGGCACTACTCTGGTGTCTCAGAGTTCCTCGATCTATAATGCAGAAGTGGTGTTTGGTATTGCAGGACCCACCCAGTCAATGTGATTTCTAACCAGGTGGACTGGAATTGCCACCACAGACTAGAAAATACACATAGACAGACTTTTGCTGATACACAAGTCTGAGTATTACTGTTTTCATTGAAGTATTTCTTTTTTTCAAAAGTCttattttaaatgtgttttaataTTTTGTTTCAACAAGTATACTATCAATAGCGGTCATTGTTAAATTATGGGCCTTCCCCATTGGAGATTTTTAGTCAGCTATATTGTATTAAAGATGCACAATGCAGAAATCTCTCCACCATTTTCCTGGTTGCTGAAATTCAAATAGTTTACCTAATTTcaatttatgtgacaaaacaagcaagtatagtgtacaATGGTACCATCTATACCgttatgaaatatattttccagaaCAAAAAATATTGTACTTTCTGCCGGTGTACAAAAGTGAAAGacagaacaggaagcatagaaatggcgcacatagaacatatctactgcttcttagacttgcttttgatgagtgacagatctataacacacatttatatgtgaatttggtcaggtcgctcaaaaagttatattgcagctttaatgttGATATTTTGTTTATCAGCTACTTTGAAAAGATGCCAATGAAAGGTTCCCAACTACAACCTTCGGGTGAATACATTTGTCTGAAATTTGCTCTTAAGCTGCAGAGGTCAAACAAATTCTCCAGCTGGCTGCCACCTATGAGGGATCAGCGACCCGGAGTTAGGACAAGGCAGGGTGGGCATCTACAGATCAGATACACCACTGAACTCTACAGACAAAGCCCAATACCTTGCCTGGCTACCCATTTACATCGATCCAGCCAACTGACGTTTCTTCTCCACAATGAGTCTGGATTTGCCTTAGAATGTGAACACATTCTGACctttctgattggtcccagaaattGATAGGTTGGGCCAGCGCCGGCCTGCATGATGACGTTATCAACTTTTATACTTTGCGTGGTTAAGATTTGTTAGACTATCCAATCACTGATGAATTAGTTTGTACAATTCTTCTAATTTTGAAGTCACACAAATAACTTCTAGGATGGCAACGCCTTCAGAaagttcataccccttgacttattccacaatctgttgttacaacctgaattctaaatagattttttttctcatccatctacacacattaccccataatgacaatgtgaaaacatgttttttgaaatgttatcaaatttacttaagtattcacactccaAATTGAGTTCATGTGCATCCGATTTCCttcgatcatccttgaggtgtcaCTGCAACTtaattggaatccacctgtggccaattaaatagtttggacatgatttagaaagaaacacacctgtctatataaggtcccacagttgacggtgcttgtcagagcagaaactatacaaTAAAGTCCAAGAaactgtctgtagatctccgAGAGAGAATTGTGATCAGGCATATATCTGGGAAAAGGTACCGTATAAAActatttctagagtgttgaaagtttaaGAGCACAGTGGTTTCCCTCATTgggaaatttaaaaaatgtggaactacccagactgccGAGAGCTGGCcatccgaccaaactgagcaaccgggcaaaaaggaccttggtcagggaggtgaccaagaacccaatgaccactctgacagaactacacaGTTCCTTGACTGAGATGGAAAAACCTGTCAGAAAGACCAACGGTCTCTACAGACTTTACCAACCTGGGATTTACgggagtggtcagacggaagccactcctgagaaaaaggcacataacagcacccctggagtttgcaaaaaagcACGTGATCGACTGAGAGAATAAGTCaaaagatgctctggtctgatgagacaattTTTACTCTTTGACCTCAAatgcaaagcgctatgtctggagaaaaccaggcacaacTCATCACCCATCTCTACCGTGAAGCAtgaatggcagcatcatgctgctgTGGGGATGCtattcagcggcagggattgggTGGCTTGAAAGGATGGGGGagcaatgaatggagccaaatacaggcaaatccttgatgagaagcTGTGCAAATAACCTTAGACTGGGGGCGAAGATTtatgttccaacaggacaatgaccccaagcatacagccaaagcaatgctggaatggcttcagaacaagactgaaagtccttgagtggcccagacttgaatcccattgaaaatctgtggaaagactttaAGATTGCTGTTCAATgccactccccatctaacttgAGGTTGAGAAagtctgcaaggaagaatgggagaaaatcacCAAATCCAGATGTGCCACGCTAATACATACATACCCAACACGACTCAAAGATGTAATCACCGccgaaggtgcttctacaaagtattaactcgggggtgtgaattattatgtaaattaggtatttcatttaatacattttctaaaaacatgttatcacttttgtcattatggtgtattttgTGTAAATGGGGgtgaattttttggggggggaattcaggctgaaacacaatGTGGTCAAAGTGgtatcaatactttctgaagccaaTGTATGTATCGATGAATAGAGCAGTGGAATTAGGTTCAGGGTGTCGTCAGGCAACCCAATACCTTCATTAGTTAGGCTTTTAAATGTCACTAGATGGGGGATAtgttcacataaaaaaaaaatgttttgtgtgtttttgctTTTAATCATGTTCATGTTATTTGTATATTGTTGTTCCCCCTGTGTTATACAATCTGCCTTGCAAACTATCATTTTTAATAAAAGATAAGTGGGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745618 lncRNA downstream 620 19321833 ~ 19322036 (-) True G1524548
TU1745614 lncRNA downstream 6150 19315112 ~ 19316506 (-) True G1524545
TU1745610 lncRNA downstream 24193 19295613 ~ 19298463 (-) True G1524541
TU1745606 lncRNA downstream 29932 19292345 ~ 19292724 (-) True G1524537
TU1745572 lncRNA downstream 36430 19281794 ~ 19286226 (-) True G1524506
TU1745619 lncRNA upstream 36913 19376767 ~ 19378106 (-) True LOC110495751
TU1745668 lncRNA upstream 57477 19397331 ~ 19397802 (-) True G1524598
TU1745767 lncRNA upstream 230889 19570743 ~ 19572529 (-) True G1524679
TU1745791 lncRNA upstream 327256 19667110 ~ 19669050 (-) True G1524702
TU1745839 lncRNA upstream 367830 19707684 ~ 19708154 (-) True G1524746
XM_021571150.2 mRNA downstream 122597 19187407 ~ 19200059 (-) True acvr1l
XM_021571148.2 mRNA downstream 122598 19187407 ~ 19200058 (-) False acvr1l
XM_036952182.1 mRNA downstream 127023 19187407 ~ 19195633 (-) False acvr1l
XM_036952183.1 mRNA downstream 127052 19187407 ~ 19195604 (-) False acvr1l
XM_036952162.1 mRNA downstream 406968 18909006 ~ 18915688 (-) True crlf1a
XM_021571158.2 mRNA upstream 14022 19353876 ~ 19373333 (-) True LOC118936284
XM_021571159.2 mRNA upstream 36821 19376675 ~ 19384501 (-) False LOC110495751
XM_036952190.1 mRNA upstream 134455 19474309 ~ 19475867 (-) True LOC110495759
XM_021571172.2 mRNA upstream 149207 19489061 ~ 19495122 (-) False LOC110495761
XM_021571173.2 mRNA upstream 149207 19489061 ~ 19495122 (-) False LOC110495761
TU1745534 other downstream 158530 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 573261 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 755409 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 780945 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 876095 18445587 ~ 18446561 (-) True ghs-r
TU1745684 other upstream 233774 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 382891 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 383580 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1231242 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2922202 22262056 ~ 22262462 (-) True G1527230

Expression Profile