RNA id: XM_021571163.2


Basic Information

Item Value
RNA id XM_021571163.2
length 2286
RNA type mRNA
GC content 0.45
exon number 11
gene id LOC110495754
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19424249 ~ 19434856 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTTACGTGTTAATAAGGTTTCGTCCATTGAGAATGCGGAGACACAAAACACTTCCGATATGCTGTCTCTTTTATAGGGTTTCCACTATATAGCACAGGCACAAAGTAAAAATTGGACATATCGTAAAAAAATTgtgaaaacaaaaaatatattttggattttAATTTAAGTTTATGCATAAGGTTAGTTTGAAAATTACATTTTAAGGAAATTAAATTAaatactttgtggctgtggtaactagtgacgacccctTTCTAGTTTCGCTAGCTGTGAGCAGTGTGAACAAATTCCGAACGAATCTATTTTCGTAGATAGCTGCCCAAAAAGAGACCGAAATCAAGATGCCTCCAAAGAAGGGAGAAGGACCAAAACAACCACCACTGATTGGACGTTTCGGGACTTCTTTGAAGATTGGGATTGTGGGATTGCCGAATGTTGGGAAGTCAACATTCTTCAATGTGCTGACCAAGAGCCAAGCCGCAGCAGAGAATTTTCCCTTCTGCACTATCGACCCCAACGAGAGCAGAGTACCTATCCCTGACGAACGCTATGACTACCTCTGCACCTTCCACAAGCCCCTCAGTAAAGTCCCAGCGTTTCTGAATGTGGTGGACATAGCTGGGCTGGTGAAAGGAGCTCACGCTGGACAAGGACTGGGCAATGCCTTCCTGTCTCACATTAGTGCCTGCGACGGCATCTTCCACATGACACGTGCGTTTGAGGATGAGGACATCATCCATGTGGAGGGTAATGTGGACCCAGTGAGGGACATTGAGATCATCCATGAGGAGCTACGGCTGAAGGATGAGGAGTCTCTTGGACCAATCATAGATAAGTTGGAGAAGACCGCTGTCAGAGGAGGAGACAAGAAACTCAAACCTGAATACGACATCATGTTGAAGGTAAAGAACTGGATTTCAGAGGAGAAGAAACATGTCCGCTTCTACAATGACTGGAACGAGAAGGAGATTGATGTGCTGAACAAATACCTGTTCCTCACGTCCAAGCCCATGATCTACCTGGTCAACCTCTCAGAGAAGGACTACATCAGGAAAAAGAACAAGTGGCTGATTAAGATTAAGGAGTGGGTCGATGCCCATGACCCAGGAGCTATGGTCATACCAGTGAGTGGAGGTCTTGAGGCCAAATTACAGGACATGACTGACGAGGAGAAGGACAAATACTGTGAGGAGGCAAAGACTCAGAGTGTACTGACTAAGATCATTAAGACGGGCTATGCAGCTCTGCAGTTGGAATATTTCTTTACAGCGGGACCAGACGAGGTTAGAGCGTGGACTGTCAGGAAAGGCAGCAAGGCGCCCCAGGCGGCAGGGAAGATCCACACTGACTTTGAGAAAGGTTTCATCATGGCAGAGGTCATGAAGTTCCAGGACTTCAAAGAAGAGGGCACTGAGAATGctgtcaagGCTGCTGGGAAGTACAGGCAGCTGGGCAGGAACTACATCGTGGAGGACGGAGACATTATATTTTTCAAATTCAACACACCCAATGCACCCAAGGCAGCGAAGAAGTGATGGGACCAACGCGACCAGTACATTAACACAGGGTTCTTGTGTCCCGTCTCATTTTGTCCTCGAGGGCCGCAGTGTCTGCTGATTTTCTCCCCTCTTCCTGGTATTATGAATGTGAGGGTAGAATTAGAATGATTGATTAATTCTATGTATGGTAGGATGAAAATCGAGTGCACACTGCAACCATTGAGGTCAGTACCAGGTCCTGAAGTATTTCCTGGTCAGTTTAtttggtcaggaaaaactcctggccctagtcAGGACTGATTGGAACAAGGAGggaccattattattattttaagtaAAGTAGGCATCTCTGACCGTGCCTGACCAGAAACCACCAACGTGACTTCCGTATTTGCCCCACCATACAAAATCTGCCCTGGTGCCTTTTTTTTGTTGGCATGGGACCCTGATTATTGCACCTACCCATACACTATATGAAATGTATATCTTTGCCCACCTCACACAAGACATTGCTGCAACATTGTGAATAAGAGGAAGATATAAATCAGTCTTCTGACACCCCTGGCCACGTTCATATTTGGAGGTGAATATTGCTTTAATTTGTTCTGGTTCCtgaaaggaaaacatcaactagctagctacttagctaaACAATGGAAGGTGCACAATCCATGGCTACAAAGCTAGCTGGCGAACTAGCTACCTACTCTGTAAGTTAGCTTGACATGCTAGAAATTAATAGAAGCAAGTtactaaaataaatgttttatcttCTGAATCAA

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG:

id description
K19788 OLA1; obg-like ATPase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744602 lncRNA upstream 90 19384228 ~ 19424159 (+) True G1523637
TU1744588 lncRNA upstream 62718 19359388 ~ 19361531 (+) True G1523624
TU1744556 lncRNA upstream 96973 19324064 ~ 19327276 (+) True G1523601
TU1744549 lncRNA upstream 132737 19291222 ~ 19291512 (+) True G1523594
TU1744547 lncRNA upstream 134931 19289066 ~ 19289318 (+) True G1523592
TU1744702 lncRNA downstream 95396 19530252 ~ 19530651 (+) True G1523726
TU1744705 lncRNA downstream 97059 19531915 ~ 19533004 (+) True G1523728
TU1744713 lncRNA downstream 111741 19546597 ~ 19547960 (+) True G1523734
TU1744714 lncRNA downstream 113540 19548396 ~ 19548778 (+) True G1523735
TU1744733 lncRNA downstream 139342 19574198 ~ 19577096 (+) False G1523753
XM_021571161.2 mRNA upstream 10207 19407644 ~ 19414042 (+) False LOC110495753
XM_021571162.2 mRNA upstream 10207 19407644 ~ 19414042 (+) True LOC110495753
XM_036952184.1 mRNA upstream 103078 19295519 ~ 19321171 (+) False LOC110495750
XM_036952185.1 mRNA upstream 103078 19295519 ~ 19321171 (+) True LOC110495750
XM_021571152.2 mRNA upstream 137986 19263166 ~ 19286263 (+) True LOC110495749
XM_021571165.2 mRNA downstream 1843 19436699 ~ 19444433 (+) False LOC110495755
XM_021571164.2 mRNA downstream 1845 19436701 ~ 19444433 (+) False LOC110495755
XM_036952188.1 mRNA downstream 2540 19437396 ~ 19444433 (+) False LOC110495755
XM_036952189.1 mRNA downstream 23916 19458772 ~ 19460419 (+) False LOC118941117
XR_005037405.1 mRNA downstream 23916 19458772 ~ 19460921 (+) True LOC118941117
TU1744577 other upstream 45777 19377067 ~ 19378472 (+) True G1523614
TU1744498 other upstream 217015 19206232 ~ 19207234 (+) False otomp
TU1744499 other upstream 217015 19206232 ~ 19207234 (+) True otomp
TU1744489 other upstream 222160 19201027 ~ 19202089 (+) False G1523542
TU1744438 other upstream 247287 19175863 ~ 19176962 (+) True LOC118941116
TU1744614 other downstream 7189 19442045 ~ 19444309 (+) True LOC110495755
TU1744679 other downstream 71536 19506392 ~ 19507256 (+) True G1523703
TU1744791 other downstream 315876 19750732 ~ 19754018 (+) False LOC110495769
TU1744790 other downstream 323459 19758315 ~ 19761020 (+) True LOC110495769
TU1744845 other downstream 340236 19775092 ~ 19827966 (+) True G1523847

Expression Profile