RNA id: XM_036952191.1


Basic Information

Item Value
RNA id XM_036952191.1
length 4954
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110495761
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19489061 ~ 19495122 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTGCACAAAAATTGGACCATCGAAACAGACCGACTTCTACGCAATATTACTTTCAAGAGTTATCTTACttaaagtagtttgaaatgtaaTGTATTTGCCTTAATCTATGTTTGATATACCTGACAAAGGGCCGTCATTTTATATGACCGTATTTGTGTGATCTCCAGTGCAAAATCGTTGTTCTGTGGTAGTGTAGTTTGTTTGCAATATTTGGCATGTAGCTGGCGGGAAGTGAAAATGTTATCATATTTATCCCTTTACGATATTTTCATCAATTTGCCAATGGAAGGTGTCTTTTTAACCAGGGCGTGCCCCGCTTAATGTTTTTGAAAATCACGGTCGATTAATGTGAGAAAAGTACTTACACCGGGGCTTTTTCTGGATGGTAGCGTCCCACTGGAAGGATCCGCTCCATCAGCCCCTTTTTGTCCCTTTTCTTTTAAAGCACTCTGACATTTCCACCACAATGTCTCAGTCAGAGACGTGTTGCATTTGTGGGGTGAGGTTTGTGAGGGGGCCCAAGGGTTACAACAGGAGGAAAGTCACCACGCTGACCAGCCCCAAGACCTTCCAGCTAGTCTTTGACATCACTCCTGATGACTCATCCTTCCTCTGCTGGGTCTGTCTGGGTGTGCTCAGAAGGAAAACCAAGCAGGATGGGAAGCTTTGGacttggtcagatttgccaacaAAAGTTGGCAGACATCGAAAGCCCCGTGCCGAAATACCAAGCTCATCCACAACATTATCCAATCAAACTCCAATTATAACCAACCCATCCTCGTTATCCATAGAGGAGTGCATTGCTTCTAAAAAAAACAAACGGAGGCCAGTTCGTCAGTGGGACGGAGAGAAATGGACCACCTTGACTTCTCGTTCCCCAGAATCCCATTCAACGGCCATCAGACGACCTCAAACGCACATAGCCCCAACCACACACTCCTCTTCAACACCATCAAATCAAGTAAATTCCTCCACATTATCAAGTCAAACTTCAAATCAGATCAGTTCTCTGTTCTCCTTTGGAGAGAGGACAACAAAAAGACGTCCGAAGGCACCCCAACCTACAACACACTCCACACTCCTGTCTCCGTTCCCCGTTGACGAAGGTATAAGGCCCAAGAAGAAGAAGCTCCCTTTCTCCAAGACTAAGCAGAGCTATGGGTTTGGCCCTCATGCCAAGGCCCTGCATTACATGCACAGCCACCAGCACCTGAAGGCCTTCAGGTCCCTGATGAAGACCAAAGCTAGAGAAGCCATGACCATTTTCCTCGCCGAGGTCATCGCCCAGGAGAGTAAGGTATTGATGAAGGACCAACGTGGGCCATTGCGTCAGCCGCTGACTGAGGCGAGTGTGAGTGGATTTTCCTGGGACGCGGTTCTAGTGTGGGGGGAAGAAAAGGCCCCTATGACCCTGGCCTGTCTTAGGGCCATGTTCCCCAAACCCAACCCCATCAGGACGCAGGTTATGATGGGAGCAAGGGAAATTAAACGCCCGAGGACAGAAGAGGCAGCAGGTGATATGGTCAGCCAGAGGGCGGGGCTTATCCTGGCCATCGTCCTCTACACCTCCATGCagaagtgcaacttcatccagGCCTCTCTGGGGGTCGAGTTCTGGaaacagggctgtcctctcagcgTGTTGAAAGCCCTCAGTGCCCTGGGGGTGTGTCCCGGTGCTGCCTCTACCAGGAGACACGCAGAGAGGCTGACAACCGGCTTTGATCCACCTCAGCAGGACCggacagagggggtggaggaacctGGGGACTCCTTTTGTAGATCTGAGGATGAGAGTCGGACTCTGAGTTGTTCTGAAGAGTATCCCAGTTCCTCTCCGACACACTCTCTGAACCCGTTCTCAGACCAATCCCACTCCAGAGACGGGTCCTCGTCCGATCGGAGTTCCAGACCTGACTCCAGATCTTGCTCCAGGAGCGACGACTACCAAGGCCCTACTCAGAGGCCTGACTCCCGGGAGTACCAGAATCTGATCAAAGAACATGGTTACCACAAAGTCCAGAAACCTACTTTGAGTCGATGGACGAAGAACAGTGAGGACAAAAGGGAGGCAAAGGAAAAACCTGTTCAAAATCTCAAGAGAAGGAAGATGACGAAAAAGAAACCTGCTCAATCGCCTCCAGTAGTAAACGCAACTGGCGCGCACCGTTCAGACATGGAGACTTCTCATATAATTAAGGTAAACATGGAACCCGTTCAAACGTCTCAAATAGACAACACACACGTGGAACTCGTTCAAATGTCTCAAGTAGACAACACACACGTGGAACCCGTTCAAACGTCTCAAATAGACAACACACACGTGGAACCCGTTCAAACGTCTCAAGTAGACAACACACACGTGGAACCCGTTCAAACGTCTCAAGTAGACAACACACACGTGGAACCCGTTCAAACGTCTCAAGTAGACAACACACACGTGGAACCCGTTCAAACGTCTCAAGTAGACAACACACACGTGGAACCCGTTCAAACGTCTCAAGTAGACAACACACACGTGGAACCCGTTCAATTGAGCGATACAAACAAGAAACCTGCTCATATAAGTGAGACAAATGTACAACCTGCTCAAATGTCTGTAATGGGCGAGACAATCATGGAACAAATTAAAATGCCCAAAAGAGGCAGGCCAGGGAAGGAACTTGCTCAAATGTCTGTAATAAGCAGGACATGCATGGAACAAATGAAGATTCCTAAAAGAGGCAGGCCAAGGAAGGAACTTGCTCAAATGTCTATAATGAGCGAGACAAACATGGAACAAATTATAATGCCCAAAAGAGGCAGGCCAAGGAAGGAACTTGCTCAAGtaagtaaaacaaacatagaacaCACTCAAACTCCACAAATAACCGACACACACTTGGAACCTGCTCACAAGCTCAGAAGTCCAAGGAAGAAACCTGTCCAAACGCCCCAGGTAactgacacacaaaacaaacccATTCAAGTAAGCAATCCAGACATTAAACTTGCTGAGACAAACAAAGAATCAGTTGTACAGGCCAAGAATGGGAGGCCAAAGAAGGGATTTGTTCAAATTCCACTATTAACCGACACTTGCATGGAACCCATTCCGGTAAGCGAGGTAAACGCGGACACCACTTTAATGCCCAGTAGCATGAGATCAAGGAAGAGACCCAGACAAGTTCCCCAAGTATACGGCACAAACCAAGAACTAACTCAAATGCCCAGAATAACCCAAACCAACAAGGAACCCTCCGAAATGCTTCAGAAAATGGACACACGCATGGCACCTGCTGTAACATCTAAAAGAGGGCGGACAAGGAAGGGACCAATTGAAATGTCCCAAGAAACCGACTTACACACAGAAGCCGGTCTAATGCCTCAAGTTGGTGAAATGAATCGGCAACGTATCGAAGGACGGGAAACAAATAAAGGACCCGCTGAACCCCAAAAACTCGCTGGAAAGGCTAAAGTAAATCAGACAACGAAAGTACCTGCAAAGACACCTGAAACACTAGATCAAATGAAATTTATTCCAAAGCGCAAAAGAGGCAGGCCAAGGAAAGAACTTGCTCAAGTGATCAACACAGGCAAGGAAACCCCTTCAATGCATAAAATAAGCAAAACAGGCAAAGAATCTGCTCTTACCCGGGAGATAAAAATTATTGTCAATAGGATGGAAAGCTGTAGTGCTGCTGAAATGCCCCAAATACGTGAGATGAACAATGAACCTGTTCAAGTAAGTGCGGAAAACTTTGAACCTGTTCAAAGACTGAGTGGGGGGTCAATGGAGGGGCTCGTTCAAATGCCCCAAGTAAGCTGCACGGACATGGAACCTGGTAAGTTAGGCAGGACCATCATGGAAACCACTTCAACGGCAGAGAGGACTGACAAAGAACCTGTTCGAAGGCCTCAAGCAAACGAAACAAAAGCAGAACTTGCTCAAACGTCTCAGATAATGGAAACGATAAAGGAACACATTCAAGTAACCAACACAGACAAGGAAACCGCTTCCGCGCCCAAAAGATGCTGCACAGACATGGAACTTGCTAAAAGGTACAAAATGAGTGACTTTCAGACCCGGGTAATAAGAATAGTTGACACTAGAATGAGGGCAAACAAATCTGTTTCAATGCTTCAAGTACACGACACAAACCAGGACCCTGAACCTGCTGCAACACCTGAAATaggcaacacaaacaaacaacccaCACGAGTGATCAGAATAGTTGTTAACAGGAGGATACCGGCAGACATATGTAGTCACACCCGGAAAAGCCTGGAGTGCCTGGCTGAGGTAGCGGCCAAATGTGCTCCATTAGATGTTAAATCTGCCGAAGAGGATGGATAGGTAGGTAGACGCATGTTACTTTTTTTGTGAAAGGTTATAACCCTAACTTAATGGGTGGGGAATAGTCTGCCTCGTCTTCTGTATTCGTTTTACTGTAATTGTACATACCAGGCTTTTGTCTTAGCAATTGTCTTCTCCACCTTGTTCATTTGATATGTACATAATCCCAGCAACCTTCTTGTGTTTGTCATTGTGTCCACTGTGGATTTAGTGTATTTGTTAGTCTTATCTCATTTTATATTTAGTTGTTCTGGTTGTACTTCTGTGGTTGTTGACAATGTaataaaaatgtatgtgttttgtACAAAGGTTATTCCTGCAGTCATAGTATCCATGCTAATTTCAGGGTATTTGTTTTCATTACACTCACAAATGTAATTTAACTAAAAGCAAAGACTGAACCAAAACAGATTTGCCCACTAATCTTTAAACTAGAAAAGAAATCGTTAGAAAACAACCACAGCGTTTATTTTGACTCGAGGCTTTTCCTTTCATACTGTTCTTGATGTATACATTCTTGCAATAATATTGCGTGGTAATACTTGTGATAATTTTGTGTATATTACTGTTGTCTCGTGTAAAAATGACACTCACAGAATAAACAGTACAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745668 lncRNA downstream 91259 19397331 ~ 19397802 (-) True G1524598
TU1745619 lncRNA downstream 110955 19376767 ~ 19378106 (-) True LOC110495751
TU1745620 lncRNA downstream 165423 19322795 ~ 19323638 (-) False LOC110495751
TU1745618 lncRNA downstream 167025 19321833 ~ 19322036 (-) True G1524548
TU1745614 lncRNA downstream 172555 19315112 ~ 19316506 (-) True G1524545
TU1745767 lncRNA upstream 75621 19570743 ~ 19572529 (-) True G1524679
TU1745791 lncRNA upstream 171988 19667110 ~ 19669050 (-) True G1524702
TU1745839 lncRNA upstream 212562 19707684 ~ 19708154 (-) True G1524746
TU1745868 lncRNA upstream 247667 19742789 ~ 19745279 (-) True G1524769
TU1745891 lncRNA upstream 353247 19848369 ~ 19848839 (-) True G1524791
XM_036952190.1 mRNA downstream 13194 19474309 ~ 19475867 (-) True LOC110495759
XM_021571155.2 mRNA downstream 104560 19322656 ~ 19384501 (-) False LOC110495751
XM_036952193.1 mRNA upstream 204 19495326 ~ 19500762 (-) False LOC110495762
XM_021571177.2 mRNA upstream 204 19495326 ~ 19501108 (-) False LOC110495762
XM_021571176.2 mRNA upstream 204 19495326 ~ 19501645 (-) False LOC110495762
XM_021571175.2 mRNA upstream 204 19495326 ~ 19501646 (-) False LOC110495762
XM_021571174.2 mRNA upstream 204 19495326 ~ 19501647 (-) False LOC110495762
TU1745534 other downstream 324935 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 739666 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 921814 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 947350 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 1042500 18445587 ~ 18446561 (-) True ghs-r
TU1745684 other upstream 78506 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 227623 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 228312 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1075974 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2766934 22262056 ~ 22262462 (-) True G1527230

Expression Profile