RNA id: TCONS_00047815



Basic Information


Item Value
RNA id TCONS_00047815
length 533
lncRNA type lincRNA
GC content 0.33
exon number 3
gene id XLOC_024101
representative True

Chromosome Information


Item Value
chromosome id NC_007136.7
NCBI id CM002909.2
chromosome length 37502051
location 23140524 ~ 23146581 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATTTACAGTGTCTGAACAATATTTCTACAATGTTTACcatatttttaatgcattaaatatttCAGCATCTCATCCCAGTACAAGCTCTTCTACAACTGAGTCTCAAACAGCAGAACCTACAATTTCTGCTACAACAAACTCTCCATCAACTGTGTCTCCAACATCAGCTcctttaaCACCCCCTGCCAGTACAAGCTCCTCTACAACTGAATCTCAAACAGCAGAACCTACAAGTAAGTATTGCATATGTGCAGTTgtcaaaaaaagatttattttatctttgccattatgacagtaaataatatttgactagatatttttcgagacacttctatacaacttaaagtgacattcaaaggcttaactaggttaattagtttaactaggcaggttagggtaattagacaagttattgtgtaatgatggtttgtctgtagactatcgagaaaaaaatatagcttaaagttgctaataattttgtccctgaaatagttttaaaaatttttttatccTATTCTTTTATtcgagccaaa

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194432

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00047813 lncRNA upstream 200 23140524 ~ 23145469 (+) False XLOC_024101
TCONS_00047811 lncRNA upstream 14530 23128698 ~ 23131139 (+) False XLOC_024100
TCONS_00047812 lncRNA upstream 14530 23130580 ~ 23131139 (+) True XLOC_024100
TCONS_00049238 lncRNA upstream 33165 23064654 ~ 23112504 (+) False XLOC_024099
TCONS_00047816 lncRNA downstream 1021 23147602 ~ 23151051 (+) False XLOC_024102
TCONS_00047817 lncRNA downstream 4213 23150794 ~ 23151051 (+) True XLOC_024102
TCONS_00047818 lncRNA downstream 11041 23157622 ~ 23158887 (+) False XLOC_024103
TCONS_00047819 lncRNA downstream 11555 23158136 ~ 23158887 (+) True XLOC_024103
TCONS_00047820 lncRNA downstream 13495 23160076 ~ 23162216 (+) False XLOC_024104
TCONS_00047808 mRNA upstream 290806 22853718 ~ 22854863 (+) True XLOC_024097
TCONS_00047804 mRNA upstream 296509 22719852 ~ 22849160 (+) False XLOC_024096
TCONS_00047806 mRNA upstream 296509 22730490 ~ 22849160 (+) False XLOC_024096
TCONS_00047807 mRNA upstream 305854 22821376 ~ 22839815 (+) True XLOC_024096
TCONS_00047803 mRNA upstream 441436 22683640 ~ 22704233 (+) True XLOC_024095
TCONS_00047837 mRNA downstream 133639 23280220 ~ 23296524 (+) True XLOC_024114
TCONS_00047838 mRNA downstream 189729 23336310 ~ 23347677 (+) True XLOC_024115
TCONS_00047839 mRNA downstream 212343 23358924 ~ 23450962 (+) True XLOC_024116
TCONS_00047840 mRNA downstream 343398 23489979 ~ 23495448 (+) True XLOC_024117
TCONS_00047841 mRNA downstream 367132 23513713 ~ 23544998 (+) True XLOC_024118
TCONS_00047805 other upstream 296483 22730407 ~ 22849186 (+) False XLOC_024096
TCONS_00047798 other upstream 550888 22587296 ~ 22594781 (+) False XLOC_024094
TCONS_00047785 other upstream 906677 22225802 ~ 22238992 (+) True XLOC_024087
TCONS_00047756 other upstream 2541657 20603896 ~ 20604012 (+) True XLOC_024067
TCONS_00047755 other upstream 2553072 20592483 ~ 20592597 (+) True XLOC_024066
TCONS_00047842 other downstream 399998 23546579 ~ 23546696 (+) True XLOC_024119
TCONS_00047848 other downstream 904467 24051048 ~ 24052227 (+) True XLOC_024124
TCONS_00047852 other downstream 1221395 24367976 ~ 24368090 (+) True XLOC_024129
TCONS_00047853 other downstream 1452195 24598776 ~ 24608014 (+) True XLOC_024128
TCONS_00047862 other downstream 2060044 25206625 ~ 25206753 (+) True XLOC_024136

Expression Profile


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