RNA id: XM_021571177.2


Basic Information

Item Value
RNA id XM_021571177.2
length 3149
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110495762
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19495326 ~ 19502053 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACGCGTTAGTAAGCTAGCTGGCAAACGCTAGCCAGTCAACTTGCTAACCGCTAACATGTCACCCAAGTTCgctaacctagctagctaattattAGCAACAATTGTCATTCATTCCAGTTGGTGTTAGCTGCTTGCTTCAAAAATAAACAAGGCGAGCTAACGCTTTCCTCGCGCCACTTACTAGACATTAGTTAAATATTTCCTAACGTACCAAATAACAAGCGTTCATGTTTCAGGAAATGTTAGCCAAAGTGAACCAGTGGCGATCAAGAGACGGAGAAAAGACATCATTAGTTTTGTGAAGAAGACTGTAGCAGGGGTGGCTGGGCTGCTGAGACTGAGGGACCCACTGTCTCCTGCCAGTGAGAGAAACAGAAGGTACACAGCAAGCCAGGGCCCCGTGGGCCTGATGGGAATAGATGAACTTCACACCTCATGGATGAGCAGCTCTGACTGGAAAATGGAGAAACCAACAGTAGGAGGACAGAGGGAGCGGGGGGGGCTGGGCCTCCTCCAGGGAGCCTCTCCCCCTCTGAGAAAACACAGTGGCTCAGTGCTGGGTCCAGGGAacccagacagagggagagacggagacgagCCCCAGAGACGCTCCCTCCAGCTCCTGCCCAGTCGGCCTACCCTGGGGGTTGGGACAGGACCCCCCAGCTCAAACCTACCCCCGCCCACCTCTAACCGCACCCACAGACAGTGCTTGGCAGTGGAGGAGGCTCTGAAGGAGAGTGATAAGGAGCACTACAGACGGCTTCTGGAGATGGTGTCCGATAAATACAGCAAGAGCCAACCGCTGCCCTTCACCCGCACCAAACCCCAGGGGGCAACATTTACACAGGATGGACATAGAATGGCCATTTTGGGAAGAACCTATGAGTCTGTGACCCCAAAGACAGGACCCCTCAGAGCCAACCCCAGTGTGTATATGTGGAGAGATACATCCTCAGCCAAACAAACCAGAGACATGAGAGGAGAGTTGTGGCTCAGTAAGCCTCTCAGCGCAGCTGTGGATACACAACCTGCCAGTAATGCAACGcagaAGCAGCCAGAGCTGGATCTCTCTGCAGAGGTGGCAGCAAGACTCAACCTGGTTGACAGAGAGAAgccaacacacactgacacactcaacaGTGCTGAGGAGCTCCCCAGGTTCAGCAAGGAGATGGCTGTGGAGGTTAGTCGTGCCCTGTCCCAGAGGGATCCTAACCTGGTCCTGAGCTCAGCCTTCAAGCTATGCATCACACAGAGAGACTTGGCCTCTCTACAGGAAGGGAGCTGGCTCAACGATGAGgtgatTAACTTCTACCTGTCCCTAGTAATGATTCATAGCAGTAGTGCGGGGCAAGGGCTGAAGGTCTACTCCTTCAGTACATTCTTCTTCCCCAAACTTCATGGAGGGGGGCACTCCGCTGTGAAGCGATGGACCAAAGCTGTGGACCTCTTCCAGTATGACATCATCCTGGTTCCGCTGCACCTGGGAGTCCACTGGTCACTGGCTGTGATAAACTTTAACTCCAGGACCGTGAGGTCCTATGACTCTATGGGACAGAGACATGATGACATCTGCAACCTCTTACTGCTGTATCTGAGAGAGGAGCACAAGGCCAGGAAGGACCGAGATCTGGACGCGTGGACAGTGGGCAGCTTGAGGCCCAGTgagatcCCCCAACAGAAGAATGGCAGTGATTGTGGAGTGTTTGCCTGTAAATATGCTGACTATATCGCCCAGGGGCGGCCTCTCAACTTCCGACAGTGTCACATGCCCCTGTTCAGGAAGCTGATGATCTGGGAGATTCTCAACCAGAGGCTTCTGTAGGACTACATAAAAAGACATTTCAGCTGCAGAACATCCATTACAACAGAAATGCTAACAAACAATTACATCAGGCATGACTACTACACAGACTCCAAACTACAACAGGAAGGACAACTAAGAAGCACAAAAGCAATAAATGAAAAAGACTTAAAGGACCAAAGCTATGGACCACAGTATGACCTCTTACCCTCTATCAGTGGGTAGAAGTGCAGTCCTGGTAGTGAAGACAGGGTGGGTGCTCTCTGAAGAATAGAGGTTACAAAGGAACGGTTTGGAATTGATTGTGTGTTCAGATACATCCTGAAGTGCCTTGGACTCCAGAGAGGGTCTCTGTCATACTTCTAGAAAACACTAAATGAGGAAGCAGTTGCACGCTTGAAGATCCCTGCTGTTGTAGATGCTATCTTAAACTTGGAACAAGCTTTCTGTGTGAAACCagagtgttttgtgtgtgtatatatgtttatattaGGTACTTTATTTTTATGACTAGTAGAAAGTGGAGTGACAACTGAGGCATATGTTATGAGTGTTATTGAATGTCTTAATTTATGGTTGAATCATCAACGAAGGCAGACACAAGAAGGCTGCATGTGTGCGTTTATTTATGTAAATATTTTTGGACATGTTTTGGTGCGCGTAGCTGAGTTTAGCTGCTTTAATTTTGTCTGGACTGGAAGAGAGACCGGAGTGTGAGGTGTGCCATCTCTAGCAGAGCAGGACCCCATCTTAATCCCTCACCACCACTAACAGATGGGGACAAATCATTTAAATCCTAAATGTGTAACAATAGTTTATTTATTTGATGCGGAAGGCTTTTCTTTTATGGCATGTATATAATTTAATCCAGCAGTAACAGCATCCGTGTAGACGTTTTTGCCATGAACTTTATAGCAGTTCTATTGGATTGTATGAGTTTTCATTAAAGGCATGTAGAGAAGAATTTCTAATGAGTCTGTACTGCTTTAGCTTGGGTCTGCCTCTGAAATTGATCCCTATGACTCAAAGTGGTGCAtttatatagggttccatttccaATAGGCCCTTGGCAAAAAATCTGTATGTGCTTTAGCTTACTCCCCTGTGGTGTTCAGTGTGATGGTAACCCTGTAGCTAACATGTCTGGGACGGCAAAGGAAGCTGAGTTGGCTAAAGCGcgtacagatctgggaccaggctagtactgCTTATGCACTGGTCATTACACTGCGTATTACATTGTGTGTATTTCTGCTGCTATTATTCCTGCGTGCATAGAGCCGTGCTGACAACCTCAGTCATGTTTTTGTATGTAATAAAGATCAGAAGGAAAGAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745668 lncRNA downstream 97524 19397331 ~ 19397802 (-) True G1524598
TU1745619 lncRNA downstream 117220 19376767 ~ 19378106 (-) True LOC110495751
TU1745620 lncRNA downstream 171688 19322795 ~ 19323638 (-) False LOC110495751
TU1745618 lncRNA downstream 173290 19321833 ~ 19322036 (-) True G1524548
TU1745614 lncRNA downstream 178820 19315112 ~ 19316506 (-) True G1524545
TU1745767 lncRNA upstream 69635 19570743 ~ 19572529 (-) True G1524679
TU1745791 lncRNA upstream 166002 19667110 ~ 19669050 (-) True G1524702
TU1745839 lncRNA upstream 206576 19707684 ~ 19708154 (-) True G1524746
TU1745868 lncRNA upstream 241681 19742789 ~ 19745279 (-) True G1524769
TU1745891 lncRNA upstream 347261 19848369 ~ 19848839 (-) True G1524791
XM_021571172.2 mRNA downstream 204 19489061 ~ 19495122 (-) False LOC110495761
XM_021571173.2 mRNA downstream 204 19489061 ~ 19495122 (-) False LOC110495761
XM_036952191.1 mRNA downstream 204 19489061 ~ 19495122 (-) True LOC110495761
XM_036952190.1 mRNA downstream 19459 19474309 ~ 19475867 (-) True LOC110495759
XM_021571159.2 mRNA downstream 110825 19376675 ~ 19384501 (-) False LOC110495751
XM_036952194.1 mRNA upstream 2391 19503499 ~ 19539978 (-) False LOC110497083
XM_036952195.1 mRNA upstream 2391 19503499 ~ 19539978 (-) False LOC110497083
XM_036952196.1 mRNA upstream 2391 19503499 ~ 19539978 (-) False LOC110497083
XM_036952197.1 mRNA upstream 2391 19503499 ~ 19539978 (-) False LOC110497083
XM_036952198.1 mRNA upstream 2391 19503499 ~ 19539978 (-) False LOC110497083
TU1745534 other downstream 331200 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 745931 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 928079 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 953615 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 1048765 18445587 ~ 18446561 (-) True ghs-r
TU1745684 other upstream 72520 19573628 ~ 19577100 (-) True LOC110495764
TU1745849 other upstream 221637 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 222326 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 1069988 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2760948 22262056 ~ 22262462 (-) True G1527230

Expression Profile