RNA id: TU1745684


Basic Information

Item Value
RNA id TU1745684
length 2142
RNA type TUCP
GC content 0.44
exon number 4
gene id LOC110495764
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19573628 ~ 19577133 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGTGTTTGCGGAGGAGAAGAGCATATAGCTTAAAGAGGTGCAAACGAAAACACAGTCAAAATTACATTTTAACCCGCAAATCCTTTAAAGAAAACCCACCAAAATGTCGGAGGAGAAACCAAAGgagGGCGTGAAGACTGAGAACGACCACATTAACTTAAAGGTAGCCGGTCAGGACGGCTCTGTGGTTCAGTTCAAAATCAAGAGACACACTCCGCTCAGCAAACTGATGAAGGCCTACTGCGAACGTCAGGGGCTCTCGATAAGGCAGATCAGGTTCAGGTTTGACGGACAGCCAATCAACGAGACAGACACACCTTCACAGCTGGAGATGGAGGATGAAGACACCATAGATGTTTTCCAACAGCAGACAGGTGGTCTCTGCTAAGCCCCTCCTGTTACAGTGATTGACATACCCAAACCACGCCcactgctcctctcctccagtcactTCAGCTTCTGTGTTCCtttgttgttttaaaaaaaaatgtttgtctcAGTTTTGTCCTGGGGTGTAGGATTGGGATGAATTTGCCCCCTAGACACTGATTTAAGGTCAGTTATTAGTTTACCCCATATTGGATGAGGTTAGGTTTAGGACACgatgagctgatcctagatctgtggtaagGGGCAACTTCTATTTTGAGGCTTCCCCATCGTCTGTTTCCTTGATCTTATTTTAAAAGATGTCTGGTGCGTTTTTGGATGGGGTGGGGGGAGGGCTCCCTTCAAATGTCTGTCTTAGTCAACATTGAACTCTTGAACTGTCTTGGACAGCTTCTGGGTCTTTCCAATGTTAAGAATCATGAGTTTTGATCTAGAAACAACCCCCTACACCTAAGCCACGTGTAGTGTTTTGTATTTATCCAACACCTTAAATCTACACGAAGTGCCTAGGTGTTAGGGGGTGGCTTCTGGACCCTTCCAATGGTTTGACATGGGGGACGCCCTGGTTTTTCCAAGGGTGCATCTCAAGTCTTATGTTCCCTCTCCTTAATTTGGCACCGATCTGAACATTCAGGCTAAGGTGGATGCTGACCATGGAATATGCTTTCACATGTCCAGTTCTTTAGTGTCAGTTTTACGAGGAGAACCCTTGTCTCAAGGAAGCTACTTATACTGTTGAGATGCACCCCTAGTTTTTTAGGGCAGTCAAACGGGAATATTCCCTGATACCATATGGGgccatttctttcttttttcagTGGTCAGTTCATACAGCAGCCCTGTCAGTGACTCTGCTTTCGGTGTTTGGGTGGGGGTGTAAGGCAGGAGGGAGAAGTCATCCTTGAacactgatacagggtcagatcaTTTGCATCCCCGGACTGGTTAATGTTTTGGGGGTTCTGGTTttctgatcctaggtctgtggttaGGGGCTACGTCTACTTGGAGCATAAGGGGAGGGGCAGTTAAGTTCTTTACCCACATGTTTTGTCATATGGTATTTGTTTGGTTTCTCTACTGATTTGTACATTGTTTGGCGTCTTTTACTACTGTAAACAATAAATATAGTTTGGTACTCAGACTCCTTGTCACGGCTCCTCCTTTAAAAGTGTGATATAAAATGGGCTCATTCAGTGGACTGCCAGTTACACATGAGAATCATGAATTGTATGTTCAATGTATTGTTTATAGTCGTATCTACTACCAATTGTGTATGTTGGACCCTATCCAGCACTATTTGAAAGTACTGTAGCTGAAATGTATTCTCAGCTGCATAAAAAGACCAGCAGGGGGTGCTACTGTCTATTGGTACAGTTGTCTGTCTTCCCTTTCTATCAGCAGGTCCCAATTCAGCAGAAGTAAAGTGAGGACATTATCCCGAGTGCCTGTATTTGTGTGCTTGTATGTTTCTGTTCAAGCGTTTAACCGCTGTGATTAGATTCTAATTTGGGCCAAAGCCGTCCTTTCCTCCGGAAACCGATAAGTGGTTGAGGACTGTGTCAGTTTGTTATTAGGTGAATGGAGAAGTCTACCTCTTGTCCTTGAAGTCTTCCCATGGAGGAAGCACAAGTTCATCCTTGGGGTCTTCTCTGCCGAAATCCACTACCCTCCTTTGAATAAGCTGCTGTTTTCTTGGAGCACCTGCATGCTTACATTTAAATACTAAATACATTCAAATTAATTTTGAC

Function

GO:

id name namespace
GO:0016925 protein sumoylation biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745767 lncRNA downstream 1099 19570743 ~ 19572529 (-) True G1524679
TU1745668 lncRNA downstream 175826 19397331 ~ 19397802 (-) True G1524598
TU1745619 lncRNA downstream 195522 19376767 ~ 19378106 (-) True LOC110495751
TU1745620 lncRNA downstream 249990 19322795 ~ 19323638 (-) False LOC110495751
TU1745618 lncRNA downstream 251592 19321833 ~ 19322036 (-) True G1524548
TU1745791 lncRNA upstream 90010 19667110 ~ 19669050 (-) True G1524702
TU1745839 lncRNA upstream 130584 19707684 ~ 19708154 (-) True G1524746
TU1745868 lncRNA upstream 165689 19742789 ~ 19745279 (-) True G1524769
TU1745891 lncRNA upstream 271269 19848369 ~ 19848839 (-) True G1524791
TU1745925 lncRNA upstream 273974 19851074 ~ 19851287 (-) True G1524820
XM_036952206.1 mRNA downstream 2933 19562014 ~ 19570695 (-) True LOC110497085
XM_036952205.1 mRNA downstream 12405 19546585 ~ 19561223 (-) True LOC110495763
XM_036952194.1 mRNA downstream 33650 19503499 ~ 19539978 (-) False LOC110497083
XM_036952195.1 mRNA downstream 33650 19503499 ~ 19539978 (-) False LOC110497083
XM_036952196.1 mRNA downstream 33650 19503499 ~ 19539978 (-) False LOC110497083
XR_002469470.2 mRNA upstream 1392 19578492 ~ 19581234 (-) True LOC110495765
XM_036952207.1 mRNA upstream 7734 19584834 ~ 19648750 (-) False LOC110497086
XM_036952208.1 mRNA upstream 7734 19584834 ~ 19648751 (-) True LOC110497086
trnan-guu-14 mRNA upstream 99559 19676659 ~ 19676732 (-) True trnan-guu-14
XM_021571185.2 mRNA upstream 185374 19762474 ~ 19772478 (-) False LOC110495768
TU1745534 other downstream 409502 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 824233 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 1006381 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 1031917 18541145 ~ 18541711 (-) True G1523234
TU1744124 other downstream 1127067 18445587 ~ 18446561 (-) True ghs-r
TU1745849 other upstream 145645 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 146334 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 993996 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2684956 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 3294945 22872045 ~ 22885833 (-) True G1528018

Expression Profile