RNA id: XM_036952207.1


Basic Information

Item Value
RNA id XM_036952207.1
length 9346
RNA type mRNA
GC content 0.51
exon number 40
gene id LOC110497086
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19584834 ~ 19648751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgtgtgtgtgtcctctctctctctctctctctctctcgctctcttactctctctgtgtTCACGTTGGGTGGGAACACACATCAGGGATTGTAGCCGTCCGGATTTAAATCGGGACGTTTACAAATGACTGGAAATCACCACCGAACAGGACCACCACCCACCCCGAGCTCGCCCGATGCCCGCTGTAATTTAGCTCCCTGTTAACACCGGCACGCGTCTGCCCACCGATTGACTTCACGAGCGCCGGGCAGCAACATAAAGAAGAATGGAGGCGTTTTTCGCAGAGggggCCCGTGTGTGGGTCAAGGAGAAGGAGCAGCTGGTCCCCTCTACTGTCAGCTCCTGTGGTGACGGAACTCTGGTCCTCACTACCGACTATGGAGagGTATTGTATCTCCAGCAGGCTGAGGTGACTAGAGAGAGAGTGTACGCTATGCATCAGTCCAGTATAGATGGGGTGGAGGACATGTCCACTCTGGCAGAACTACACGAAGCTGCCATCATGCACAACCTCTACCAGCGCTACCAGAAGGACAGCATCTATACCAACATAGGCAGTATCCTGGCAGCGGTGAACCCTTATAAACAGATCCCAGGCATGTATGACCTAGATAGAGTTGAGCTGTACAGTCGACACCACATCGGAGAACTCCCGCCCCATATCTTCGCTGTAGCCAATGAGTGTTACCGCTGCATCTGGAAACGACACGACAGCCAATGCGTCCTCATCAGtggggAGTCGGGGGCTGGTAAGACAGAGAGCACCAAGCTGCTGCTCCAGTTCCTGTCTGTGATGAGCCAGAACTCTGCTGGGACGCCTCCTTCTGAGAAGACCACACCAGTGGAGCAGTCCATCGTTCagagcagTCCTATCATGGAGGCGTTTGGGAATGCCAAGACAGTGTACAACAACAATTCTAGTCGCTTTGGGAAGTTCATCCAGCTCCACTTCTCCCAGAGCGGGAACATCCATGGTGGATGTATCGTTgactATTTACTGGAGAAGAACCGCGTGGTGAGACAGAACCCTGGAGAACGGAACTACCACATCTTCTACGCCCTGCTGGCCGGAGCCAACAAGGAACACAGGGAGCTGTATTTCCTGGATGACCCTCCTGAGTCATTCCACTACCTCAGCCAATCAGGCTGTCTCAAAGACAAGAGCCTGGACGATAAACAGCTCTTCAACAGTGTcatgGAGGCGCTGAAGGTGATGGAGTTCACTGAGGAGGAGACCAGAGACGTGTTCAAACTGCTGTCTGGAGTCCTACAGCTGGGCAACATTCAGTTCATGACCGCCGGAGGAGCGCAGATCACCACCAAacaggtgctCAGTAATGTCAGTGAGCTACTTGGGCTGGACTGCTTCCAGCTGTCTGAGGTGCTGACGCAGAGATCCATGATCCTCAGAGGAGAAGAGATATGCTCTCCGCTCACCATagaacaggcgGTGGATTCCCGGGACTCTGTCTCCATGGCTCTGTATTCCCAGTGTTTTTCCTGGATCATTCTCCGGATCAACCAGAAGATCAGAGGGAAAGACAACTTCAAGTCCATCGGAATACTGGACATCTTCGGCTTCGAGAACTTCCAGGTGAATCGGTTTGAGCAGTTCAACATCAACTACGCCAACGAGAAGCTGCAGGAGTACTTCAACAAACACATCTTCTCTCTGGAACAACTGGAGtacaacagAGAGGGAGTCCAGTGGGAAGCCATAGACTGGATGGATAACGCTGAGTGTCTGGACCTCATAGAGAAGAAACTGGGGATGCTAGCATTGGTCAACGAGGAGAGTCGCTTCCCCAAAGGGACAGACTTCACACTGCTGGAGAAACTACACAGCAGGCACTCTACAAACCCTTACTATGTGAAGCCTCGACTGGCTGACCATCAGTTTGGCATCAGGCACTATGCTGGAGAGGTTCTGTATGATGTCACCGGGGTTCTGGAGAAGAACAGAGATACATTCAGAGACGACATCCTCAACATGCTGAAGGAGAGCAGACTGGACTTCATCTATGATCTGTTTGAGAGAGTGGGCAGCAGGAACAGTGAGGAGACTCTGAAGATGGGAACAGCCAGACGCAAGCCTACCGTCAGCTCACAGTTTAGggactctctccattctctcatgGGCACTCTGAGTGTGTCCAACCCCTTCTTCGTGCGCTGCATCAAACCCAACAACGAGAAGAACCCGAGTGTGTTTGACCCGGAAGTGGTTCTGAACCAGCTGAGGTATTCTGGAATGTTAGAAACCGTTAAGATCCGCCGGGCCGGCTTCCCTGTCCGCAGAACCTTCAAAGATTTCTTCAGccggtaTCAGATCATTCTGCAAGAGAAGGGGGGTGGAGCGGGGGATGATAAGAAGAGGAGTACAGACCTGCTGACCAAATACGACCGTGCCAAGAAGGAGTGGCAGCTGGGAAAGACCAAGGTGTTTATGAAGGAGTCTCTGGAACAGcgtctggagaaagagagagacgaggtTCGCCGTAAAGCAGGCATGGTCATCAGAGCCCACATCCTCACCTACACCGCCAGGAAGCACTTTAAGCGTGTGAAGGGGAGCGTCATCACCCTCCAGGGGTACCTTCGTACCCACATACAACGGAAATGGTTTCTACGGCGATGCTTGGCGACGCGGGTACTCCAAAAACACAGACGAGGACAGGTGGCCCGCGCAAGCTGCCGTCAACTCAGAgacgagaggaggaagagagaggaggaggagaggaagaagagagaacaggaggagggaaagaaggagggagaggtggaaggagagaaggggggaggagtAGAAGCAAAGGCTGCTCAGGGTTCTGAGaAAAAGGAAGGAAAGACGGAAGAAGAGGCCCGTCAGATGGAGGAGATATTGCGTATAGAGTTGGAGATCGAGCGCCTACAGAAACAAAGGGAGGATGGGGTCTCCCAGCTCTGTGAGTCCTCCAGGCAGGAGCTCCGGCTACGCCGGGACGCAGAGATCAAGAGGCTGAAGAAGGAGGCCTCTCGTAAGGCCACAGAACTAATCGACCTCCTGGACTTTGGAGGTCTGGATCCTAGTTTAGCCACCGCGGCTAGCGCTAGTGTAGAGCTGCTCCAGGAGGGCCCAGCCATGGCCACGGCCGTAacccaggaggaggaggtggacgaGGGCTTCCATGCCGAGGAGGAGTgcactgtccctctcctcccagacTTCCCTCCTCCAGCCGAGGCTGACGCTGCCGTGGACCAGGATATGTTCGCCCACCTGCCGCCCCCTCCACCTGCCTTCGCTGAGGGCTCTACTGCTacaccacctccccctctcctcgaTTCATCCTCACCCACTCCCGTCCCTCCCCCGCCTCCCCCCTTACCAGTTGAAGATGGCTCTGCCACCCCTCCCCCACCATTGCCtcctggagagggggagggaaaaggaaaagagggggagaaaaaagagggtgatggagggaggacaacGAGTATCTTGAGCCTCGGAGAAGGGGAGGAGCCGATCTACAGCATGCCGGTCGACAGCGGCGAATCAGATTACGACGAGGAGGAGGGCTCTGTCACCGCGGGAGACGATGGTTCCGCATCCGGGCAGAATAGCAACAGAGGCAGCGCGGCCATGACGGAGGAAGAAGCTCTGAGGAAGTCCACGTGCACCAACGCCAGCATAGAGTCATACAGGGGCAGCTCTGACTcaTACATAGAGAGTGATGATGAGCATGATGAGCTGTTGGACACAGATGAGGAGGTACACAACGGCAGGGTCACTCTTCTCAATGGGAACGGACCTCCGTACTTCCATAGTTACCTCTACATGAAGGCTGGTCTGATGATTCCATGGCGCAGGCGGTGGTGTGTGTTGAAGGATGAGACCTTCATGTGGTTCCGCTCCAAACAGGAGTCCCTCAAGTCTGGCTGGCTCCATAAGAAGGGAGGAGGACTGTCCACTCTGTCCCGCAGGTtgggGAACTGGAAGATGCGATGGTTTGTTCTGAGGGAACACAAACTGATGTACTTTGACAGCGACAGCGAGGAGAAACTGAAGGGAACCATCGACATCCGCGCCGCCAAAGAGATCGTGAACAACCATGAGAAAGAGAATGCGTTGAACATCGTGACAGATGAGAGGACGTACCAGGTGTTTGCTGAGTCGCCAGAAGATGCCAGtgcgtGGTATAACATCCTCAGTAAGGTCCATGTGTATACTCCCGAGCAGCTGATGGACATGTCTCATGAACAGGCCAACCCCAAGAACGCTGTGGGAACTCTGGACGTGGGGCTGATTGACTCAGTCTGTGCCTCTGACAACCCAGACAGgcccAACTCCTTTGTGATCATCACAGCGAACCGTGTGATCCACTGTAACACTGACACTCCAGAGGAGATGCACCACTGGATCAGCCTGCTGCAGAAACCTAAAGGAGACGCCAAGATAGACGGACAGGAGTTCCTGGTTAGGGGTTGGCTCCAGAAGGAGATGAAGACAGGAACTAAGAGTAATGTTCTGAAGCTGAAGAAACGCTGGTTTGTGTTAACCCATAACTCCCTGGATTACTACAAGAGCTCTGAGCGAAACTCCTCCAAGATGGGAACCCTCGTCCTCAACTCCCTCTGCTCTGTCTTTCAACCTGAGGAACGAGtgcacagagagacagGGTACTGGAACATCGTAGTGCACGGTAGGAAGCACTCGTATCGCCTCTACACGAAGATGCTGAATGAAGCTCTGAGATGGATAGCAGCCATACAGGCAGTGATAGACAGCAAGACACCCATAGAAACACCGACACTACAGCTCATCAGAGATATCAAGGACAGCAGTCTGAACCCTGAGGCAGTGGAGCAGACCTACAGGAGGAATCCCATCCTCAGATACACTCAGCACCCTCTACACTCCCCCCTACTGCCACTACCCTACGGAGAAGTCAtcCAGAGACAGCAGGGCTATGCCAGTCTTCAGGATGAAGCGATCCGAGTGTTTAACTCTCTTCAGGAGATGGAGACTCTGGCAGACCCTGTTCCTATCATACGGGGGGTACTGCAGACCTGTCAGGACCTGAGACCTCTCCGAGACGAGGTATACTGTCAGGTGATCAAGCAGACCAATCACGTACCTCAGCCCAATCAGCCCAATCAGCGGGCTCATTGGCACCTCCTCACCTGTAtgagctgtaccttcctcccaaGCCGGACCATCCTCAGATACCTGCGCTTCCACctcaaaagGGTGCGAGAGCATTTCCCCAACACAGAGATTGAGCGTTATTCTGCTTTTATCAATGAGTCTCTGAAGAAGACCAAGACCAGGGACTTTATTCCGTCTCAGGAGGAGATCGTGGCCCTACTGGTGAGGCAGGAGATGACAACTACAGTCTACTGCCATGGAGGAGGCTCCTGCAAGATCTCTATCAATTCACACACCACTGCtggagaggtggtggAGAAGTTGATCCGCGGCCTGGCCATGGAGGACAGTAGGaatctgttctctctgtttgagCACAACAAGGTGACGGACCGAGCTCTGGAGAGCAGGGTCATAGTGGCTGATGTCCTCGCCAAGTTTGAGAGGCTGTCAgggactgaggaggaggaggaggaaggacagTGGAGACTCTATTTTAAACTTTACTGTTTCCTCGACATGGAGAGCATGCCTAAGGAGGGGGTGGAATTTGCTTTCATGTTTGAGCAGGCCCATGAGTCTCTGATCAGTGGTCACTTCCCGGCCCCAGAGGAAACTTTGCAGCAGCTAGCCGCTTTACGGCTACAGTATCTCCATGGAGACGGGGCCAGCCGCGCTGGGTGGAGCCTCGGTACTGTTTACCCAATGGGGCGCCTCCGCTCGCGCATCTTCCACTCCACCAAACAGGGAGGCGTggcaggaggagaggcaggaggagggcaGGTGGGAAGTGTCAAGGGGGACGGGCAGGATAGAAGGAGAACCCCCAGCTTCCTGGATGGAAGTCTGAGGCGCAGCTTCAAGACGGGCTCGCTGAAGAAACAGAAGGAGgaagaggggcagcaggtagagATGTGGGTGAAGGAGGAGACATCGGCCACCAGAGCCCATGTTCTGGATAAATGGACCAAGTTACAGGGACTCGCCCAGCACCAGGCTCTGCTCAAATACATGTCCATCGTCAAAGAGTGGCCCGGATATGGCTCTACACTGTTCGacgtggagtGTAAGGAAGGAGGTTTTCCCCATGATCTGTGGCTGGGTGTGAGTGCTGACAACCTGTCTGTGTATAAGAGAGGGGAACCCAAACCTCTGCAGACGTTCCAGTATGAGCAGATCACCTTCTTTGGAGCTCCACAACCCTGCACCTACCAGATCACTGTCGACGGCAACGACTTGTTCTTCCACACTCCattggtgaTGGAGATTGCTAAGATCATGAAAGCCTACATCAACATGATGGTGAAGAAACGCTGCAGCATCATGTCTGCCTCCAGCGTCGCCAGCACCTTTGTCAGGTGATCAACAACCAGTTGTTGTTTTGGTGGAGTCAGCTGATCTTGGAAAGGGGTAACCACAAAACAGCGGACAGTCAAGGATCTAAAATGGCATCCGATTTCACAAAACTAAAAGGGGATGGACACTGCAGCTAACTATTCTAGACTTGGGAATTGGGTGGATTGGGTTAAATATCTGTTTGTTAACAATGAGCATGGAAAATGACCCATTTTGGGGAGGACAACTCCAGCACCTCCCAACCCCCAGTTATCCTGCATGTCACTGTCTTACAGACAGCAGGTCCAGCACATTCTAACTCAACCTTACTTCATCTAAATATCTCTATTACTCCTTTTATATCaatctctaatctctctctctcctctgtcatccctctctctgttctctctggacCAAACCCATACCAACGACAAGCACAATAGCCCAGTCAAGCCATACCACCCGCAAAGCCCCTGTCGCCCCCTTCTCAACCCAATAGCACACCCCCGGTCGCAGTCCCAACACACTGCCAGCTAGGAGAGATCAAATGAAGCCTGTTACTATTTCTATcttccttcctctgtctcttaccctctctcccccatttgatataactctctctttctctgtctgtgtgtcccccATTTTGCCTGCTTCACTCTCTTTACAGTTAAGTGTTAATTTATTCTCTGTTGCTTGCTTCctttcctctctatttctctcactcaATCTCTCGTTCATCTGTTGTTATCCGTGGTGACTGAGATAAaggactgttttgtgttttcATCTCGGGGTCGAATCAGATAATCCGGTCCCTTCCTCATCAGACTGCACAGTACTTACTTCCTGTGTCAACGGAAGTGACATCACATATGGTCAAATGAAGTGGCCTCAAACAAACCCCCTCAGAGAACCAGGGCTGGAGGCCCAACCAGGGCTGGAGGCCCAACCAGGGCCATCTCCCCGGGATCATCCTGACTCAGAGGCTCTTTCAAGGGGTAGCTGTCTGGctcggtctggggggggggggggggtctctccaTGGGAGGAGAATGAAAAATGTTGACTACAAGATCAACCAAGGGAGATTGAGAGAGCTTTCTCCTATAAAATGTCTACATACTATGAACACCACATATATTACATATTCATGTccaacctacacatacacacatacactaatCAAACACTTATCATTTTTGAATATCGCACCTCATAGGAACCCTACATAGATTTTGGTGgtctctgtactgtatgtatataaataTCATTATAAATgccatttgattaatttattGTATGTGTAAACTAAATGCGAAGGAACAGAGATATTCACTGCTGTATGTCTAATATGCCAACGCACCCTTATTCACTAGCAGTGCCATCTGACAAAATCACAGATATATAGAGGGGTTTCACTTCTTGATGTAGAATGGGTAGAGTTCAGTCGCGGCGGCCATATTGGTAAGGCGGTTTGGGATGGTTGCCTACATGCGTTTCTCTGTGCTCTAGTGAAATGTAGCCTTCGTATCATCCTTCTGGCTCACGTTTCCATATCGGtgggtacttttttttttttaaacatgaggAATCTACAATCTTGTCTTCTCTACCCATTCTGTTTCTATGCTATGTGACTGTTATCGAGTTCATGAGTGAATAGAACCTGTTTTAAGTCATGTGACTAGTGTACTGTACGTTCCCAGTGTCTCCCGTCCTGCAGTGCTGTGTTTGGAATGCTAACGTGAGCGTGTGTATCTGTGTCATAATGCAAGTGACTAACTAACTACCCCACCGGGGGGAAGAAGGGAACCATatgaagaaaagaaagaaagtgtGTTGTTGACAAATAAGAGTATTATCTATCTGGATAACCTTTATAAGAGAATGGTGTTGTGATTTTAAATGGGGAAGAGTTTGGGaatggaagaagggagggagaggggaggatggggtaTTTATTTGTTAGAATTATtgcagatggagggaggggatatGGTTACCGTATGGAATTCTGTGAAAGAAGAGAAGATCACACATTGAGGAGGTATGCATCTTGGAAATAGGAATTCAGAATTCTGGGAACATGGGAATTGTGTTTGTTTCTGACTGAGTGTCGTCACTGCTTGTGGGCCTAAGCCCACTGGAGGACCAGTCTATAGAATCAGAATGACTGGAAAAGACATTCCATCCAGTGTTCCACTGGACCATTTGGAATGACTGAAAAATCCTCTTTTTGCGGGCCAGTGTAGCCTACATGAATACATGTTTTTGGCAGACAGGCGGAATGTCAATTATCATCACATCCAGTGAAATTCGGGAACTGTGTCCTATCTAGGTATTCTCTTTCAATGGCCCTGCCTCTCACACTGCTAGTACACAAAGTAAGATGAAGTTGCCTCTTGACACTTATCTAAGGCAGTGGAGGTTGCTGAAGGGAAGAAGGCTAGTAATATTGGCTGGAACTGAGCAaaaggaatggcatcaaacacatggaaaccatgtgtttgatgtatttgataccattccattgattttgctccattaccacaagcccatcctccccacttaaggtgccaccaacctcctgtgatctaAGCTCAATTTTGCGTTTCACACCCAAATGGtaagggtaagctgatcctagatctgtgtctaTGAGCAATCTCTATACCCGGGGTCCTTTTCCAGCCGCAGGCGGCCAGAGTagggcctgactgtaatctgTCATGGTTCATATTAATTATTATCATTATATATTGAAACATTGTGATtgttttgagagaaaaaaagagaaagagagagaaaattgtTGTTCTTTTTTTTGTAACTGGCTTTACAAACTTATGATTTAATAAATTATCGGAAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745767 lncRNA downstream 12305 19570743 ~ 19572529 (-) True G1524679
TU1745668 lncRNA downstream 187032 19397331 ~ 19397802 (-) True G1524598
TU1745619 lncRNA downstream 206728 19376767 ~ 19378106 (-) True LOC110495751
TU1745620 lncRNA downstream 261196 19322795 ~ 19323638 (-) False LOC110495751
TU1745618 lncRNA downstream 262798 19321833 ~ 19322036 (-) True G1524548
TU1745791 lncRNA upstream 18360 19667110 ~ 19669050 (-) True G1524702
TU1745839 lncRNA upstream 58934 19707684 ~ 19708154 (-) True G1524746
TU1745868 lncRNA upstream 94039 19742789 ~ 19745279 (-) True G1524769
TU1745891 lncRNA upstream 199619 19848369 ~ 19848839 (-) True G1524791
TU1745925 lncRNA upstream 202324 19851074 ~ 19851287 (-) True G1524820
XR_002469470.2 mRNA downstream 3600 19578492 ~ 19581234 (-) True LOC110495765
XM_021571180.2 mRNA downstream 7701 19574235 ~ 19577133 (-) False LOC110495764
XM_036952206.1 mRNA downstream 14139 19562014 ~ 19570695 (-) True LOC110497085
XM_036952205.1 mRNA downstream 23611 19546585 ~ 19561223 (-) True LOC110495763
XM_036952203.1 mRNA downstream 44856 19503499 ~ 19539978 (-) False LOC110497083
trnan-guu-14 mRNA upstream 27909 19676659 ~ 19676732 (-) True trnan-guu-14
XM_021571185.2 mRNA upstream 113724 19762474 ~ 19772478 (-) False LOC110495768
XM_021571183.2 mRNA upstream 113724 19762474 ~ 19793454 (-) False LOC110495768
XM_021571184.2 mRNA upstream 113724 19762474 ~ 19793454 (-) True LOC110495768
XM_036951384.1 mRNA upstream 211454 19860204 ~ 19864234 (-) True LOC118941046
TU1745684 other downstream 7734 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 420708 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 835439 18749125 ~ 18749395 (-) True G1524311
TU1744093 other downstream 1017587 18561906 ~ 18567247 (-) True G1523241
TU1744079 other downstream 1043123 18541145 ~ 18541711 (-) True G1523234
TU1745849 other upstream 73995 19722745 ~ 19730068 (-) False G1524755
TU1745850 other upstream 74684 19723434 ~ 19725531 (-) True G1524755
TU1746271 other upstream 922346 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2613306 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 3223295 22872045 ~ 22885833 (-) True G1528018

Expression Profile