RNA id: XM_036951422.1


Basic Information

Item Value
RNA id XM_036951422.1
length 4912
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110497087
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19683836 ~ 19693492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCACCTAGTTCACAGTACAATTAGGTTAACGGTGACCGTCTACCTTTGCAATTTATGGGTgttattttattgatttattttgcgTTGATTCATTTGAAGCCCAAAATGCATTTAGAATGGCTCTCCAATCGCGCGTAATTTAATTCAGGAGGTTATACAAACTTTCAGTGTAGCAGGTTTCATAAAAAGCAACCAGTGATTTTGGACGAAGTCAATTCTCGGTCTGTCTCTATTCACCAatccatttattttatttgaatgcacacatttgttttacatAGATGTTATAGACTTCACTGATATGGATGTTCGTTTGGAAAACCACTTGGATTATTTTATCCACGACAATACTGCTGCTGCGGGCTTGAGTCCAGAAATGCTGGCAGTTGCACGGGAAGCCTTCCGTGCTGGGGACTTCAACCTTCTTGCTGAGATATACGGCTCCCAGCTGGCGGACCTCCGACACCCGGACCGGAGCCTCTGCCTTCTGAATGCGGATGCTCTCAGCCGTGCAGGGCGGATAGCGGAGGCTCTGGATTCATACTGCACCGCCGCCAACTTGGACAGGTTACGACCAAACGAACTAGGGTCTCTCGTTGACTGTATTGCGCACACTTTGCGCGTAAAAGAATGCCTAAAAGAATGCACAGACTCCAATGGGGTTTCCGAGGATGAGCATTCGTTGGACCTGTTCTCATGTCGGCTTTGCAAGGGCTTGTTAATCGAGCCAACAACTTTGGAATGCGGCCATACATTCTGCAAACCATGCATTGAGGATGACGGTGTCAAAGAATGTGAATTCTGTCGTTACAAACTGAACAAAACAAATAGAGAATTAAAGCCAATCGGGTTTAAAGTGAATGTAGTACTCAGTGGGCTGTTGAGTAAATGGTTTTGTGCAGAGAGTGAAGCAAGACGATGCTGGCTTGAAGGGGATAGAATGCGGAACGAACAGGGCTTTATCAACGCACTTGAAAAATACAACTACGCTCTTGaaaaagCCCCCTTTATGTGTGGGCTGCTGGCCCGACGGGCAGAGCTGCATATGGCGATGAACAACTTCAGACAGGCCCTACAGGATGGAGACGCCATGTGTCGACTGACGCCCCTCTCTCCCAAGGCTCACTACGTGAAGGCCCTGGCTCTGAACAAAGCCGGTTATAATGAAGAGGCTCTGCAAGAATACCTCTACTGTCTGGCTCTGAAGCCAGACTGGACCTCAGTCAAGCTGGAAACGCAAAAGTTAAGCGACTCCACTGTGTTTCTAATGCTGAGTGAGATGTTCTCCACGTTCAAGACAGACGGTCTCCCCACGTCATCACTTCGCCTCCACCCAACAGGCCCCGCCTCCCACCTCAAACCAGCCTCCCATCTCCTCGACTCCCTCCATTCCACCCCTCGTAGATGGAGCCATACCCCTACTGGCCGTAGAGACAGTTTGTCTGACACTGGAGCAGAGACCAAGTCCTCATGTGAGGTTTCCAAGACCCTGGCTTCTGTTGTGGCTGCCTTACCTCTCCCCCCTGGCCTAAAGAGGAAGTTCTCAGACGAACCCATAGGCTCTGCACCCCCCAACAAGCTGCCCAGAAAAGTCTTGTGTTCCGATGAGTCAAGCTCATCCCAGGTGCCTGCTGCTTGTtgcagtgagaggagagaggtgccCCCTCAGCTCCTGGATAGCTCTGACATGGACTGCTCTGTTTGTATGAGGCTGTTCTACGAGCCAGTCACCACCCCCTGTGGACACACCTTCTGCATGAAGTGTCTTGAGCGCTGTCTGGACCACAACCCCAACTGCCCCCTGTGTAAAGAGAACATTACAGAGTACCTGGCCACTAGAGGGTACCATAAGACCCTGCTGATGGAGGAGGTGCTGCAGCGCTACCTGTCTGAGGAGCTGGCTGAGAGGAGCAAGGTGTACCAGGAAGAAATGGCAGAGCTCTCAAACTTGGCCCAGGAAGTTCCCATCTTCATCTGCACCATGGCATTTCCCACAATTCCCTGTCCCCTGCAAGTCTTCGAGCCGTGTTATAGGCTGATGATCCGACGCTCTATGGAGACGGGAACCAAGCAGTTTGGAATGTGCATCGCTGACGACATCAAAGGCTTCGCAGACTACGGCTGCATGTTGGAGGTGAAAGACGTGAAGTTCCAACCAGACGGGCGCTCGGTGGTCGACACGGTCGGAGTGTCCCGCTTCAGAGTGCTGAGCCACGGCCACCGCGACGGCTACAACACAGCCAAGATAGAGCACCTGGAGGACcagaaggtggagggagaggagctggCGGAGCTGCAGAAGCTGCATGACTGTGTGTACGAGCAGGCCAGCACCTGGTTCACCTCCCTCAAAGACAACATGAAGAACCAGATCGTCAGCCACTTTGGACAGCTGCCTGAAAAAGACCCTGACATTCAGGGGGGTGCCAGtggtcctgcatggtgttggtgGCTGCTGGCTGTACTGCCCCTGGAGAAGAGAGCCCAGCTAAGCATCCTGGCCATGACCACCCTCCGAGAGCGCCTCAGCACTACCCGCCGCGTGCTCAGCCTCGTCACACGCAAACACCCTCCACCGCGGCGACCATCTTCAGCAgcggcatcatcatcatcactgtagTGGCCCCCCGAGAGGTGATCAGTTTAGAATAATCTGGGCCCAGTTAGGAGAAATCCAGATTGTCAAAAGTTACCTATCGGCTCtgattaaatgcatagaaatataatgaatagaacgggAGTCCCCGTTGAAGTCGGTTATTTTtctgttctattcattatatttctatgcatttaatcctatcTGATAGATGACATCCGGATAGATAATCTTTGGAAAACTGGGCCctggagaagaagggagaggatactCCATTTTCCTCTGAAGCTCTAGCCTCAGATAAAGAGTTTCAACAGTGGGAATGATTCAGCAGTGTTGTTCATGATCTCAGGAATGGGTTGTACTTGAGTCTTACAAAAAGGATCGATGGACTAGCCCTACCCAACCAAAACACATAAATGTGTGTCAGGTTTGCGCACATATCTTTGGGTCAATTTCATTAAGTCCAGATTTGTCATGTGTGGTACATTCGTTTATTTTGTTCTTATTTTATTGTTGGCCTTTGTACAAATGAGGCCTTAATTTATttttgcaatatgttttttttctacTATTTGTCATGTGAAGCCAATTTTCATGTACAGAAATGTAGCGTTTTTCTATGGGACATAATGAATAGAATGCACACCATCACTTACTGGAACAatatgttctactgtatgttggtAATCATGTCAGGAGGGAGCGCTTGATGCAAGCAAGTGAAAAATAGCAGCACAGACATTGTAGTAGCACCAAACATCCACAGGGTGGCAGTAAGTGTGAGCAAAGACGATCAGTGCAGACAACCCTACATTTGAACAGGTGTTTTTTGCGGAGGACAGATCCACCCCTTTCCTCTCTGTCACAAAGACAATGGACAGTAGGACAACACTCCTGTCATTCAACAGCCTAGTTTAGTTAAATGAATCAAAGCTTGATTAAATATAGTAAGCCTAAATCATGTCTTTATAAGTGGCTTCATAGCTCGTCAACCATCTTGATTAATTAACCAATGATTTTCAGCTTGCTCAATTGCACATCGGAACCAATGTTTTCAGCCTCTCCATGGTGTGTTTTCCCAGCAACACTGCTGTGTTCTGATCTAGACAGACTGGTCCCAGGTTGAAGTCCCTTAAGGGAATGTTCATCACTGGATGCTGTACAGCAGGGGTGTcgaactcattccacagagggccaagtgattgcatttttttatttcaattaagacctacccaaccaggtgaggggagctccttgctaattagtgaccttaattcatcaatcaagtacaagggtggagcgaaACGCTTCAGGCACTCCGCGGAATGAGTTTGATGTGCTGTACAgtaacatttttgttttttacagtaACAATGAGGCCAATTGGTGTTTTTTCCCAATGTGCTGTTGTGAGGCATGCATAGACACTCGCCTTCATAGTTATCTACATGAGTCTATTCCAAAATCACACAGTGGGTCTCTTTCCCCCCCCCACAAACAGAGGTTGTCAAGAGGCCTGGGCAAAGGCACAACATATTCCATATTCCAAATTGTAAGGACTGGTGTACTGTGTGGTCACCACATTAAAAGCTTCTGTGACATGGCATATCTCACCCACACAGTCAGATCTTGGAGAAGCAGCCAGGTGAGTAATTTGGGTTACTTAGAAGTCAGAACCGAAGACGACATGTCATATTTGTAGACAATGAGTCACCTTCGTGCTCCGTCATCACCATGTTGGAAGGATCTGGATTCTCCCGAATTGATTCATTTCCAAACCCTCTTGATAAACACACACGCCATCATTCTCccagaccagtggaggctgctgagaggaggacggctcctAATAATGGCTGGATCGGCGCGAATGGAATGGCTGCAaaccatgtttgatgtatttgataccattccaccgatTCCGTTCCATCCATTACCATCAGCCCGTCCTCCCCAgtaaaggtgccaccaacctcctgtgtgcCAGACACATTTGCAGAAATTGCTCGTCACTACATTTTTGGTAACACAAATGTGAAAATTGCATTCAATGAATCTTAACTTATACATAAATGTATGATTTTGCTACTTGTGTGTTCATTAGGCCCAAAACGTGTATTATTCAAACCATTCGATATAGTTATACGTTTACCATCAATGTCACCCTCAAAAGTCAGGCCACGGTTTGTGTCTTGAAAGGGGGTCTATTTGAACAGTGGGAAAATAATGATCTGCAGATCTTTTTGGCATGGTCTCTTTGAACCATCTGTTTTATAGCCTAATAAATATTTATTGAATTCTGACCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744771 lncRNA upstream 52321 19630938 ~ 19631515 (+) True G1523783
TU1744753 lncRNA upstream 83546 19596636 ~ 19600290 (+) True G1523765
TU1744750 lncRNA upstream 89945 19593341 ~ 19593891 (+) True G1523763
TU1744733 lncRNA upstream 106740 19574198 ~ 19577096 (+) False G1523753
TU1744871 lncRNA downstream 154707 19848199 ~ 19848792 (+) False G1523871
TU1744872 lncRNA downstream 154877 19848369 ~ 19848838 (+) True G1523871
TU1744895 lncRNA downstream 162234 19855726 ~ 19856055 (+) True G1523894
TU1744897 lncRNA downstream 164614 19858106 ~ 19858708 (+) True G1523896
TU1744924 lncRNA downstream 215408 19908900 ~ 19917765 (+) True LOC110495772
trnan-guu-15 mRNA upstream 6653 19677110 ~ 19677183 (+) True trnan-guu-15
trnak-cuu-73 mRNA upstream 7483 19676281 ~ 19676353 (+) True trnak-cuu-73
trnak-uuu-125 mRNA upstream 10460 19673304 ~ 19673376 (+) True trnak-uuu-125
trnak-uuu-124 mRNA upstream 11590 19672174 ~ 19672246 (+) True trnak-uuu-124
XM_036952213.1 mRNA upstream 14689 19655216 ~ 19669147 (+) False LOC110495766
XM_036952222.1 mRNA downstream 554 19694046 ~ 19729952 (+) False LOC110495767
XM_036952223.1 mRNA downstream 577 19694069 ~ 19745286 (+) False LOC110495767
XM_036952215.1 mRNA downstream 578 19694070 ~ 19745286 (+) False LOC110495767
XM_036952217.1 mRNA downstream 578 19694070 ~ 19745286 (+) False LOC110495767
XM_036952216.1 mRNA downstream 579 19694071 ~ 19745286 (+) False LOC110495767
TU1744679 other upstream 176580 19506392 ~ 19507256 (+) True G1523703
TU1744614 other upstream 239527 19442045 ~ 19444309 (+) True LOC110495755
TU1744577 other upstream 305364 19377067 ~ 19378472 (+) True G1523614
TU1744498 other upstream 476602 19206232 ~ 19207234 (+) False otomp
TU1744791 other downstream 57240 19750732 ~ 19754018 (+) False LOC110495769
TU1744790 other downstream 64823 19758315 ~ 19761020 (+) True LOC110495769
TU1744845 other downstream 81600 19775092 ~ 19827966 (+) True G1523847
TU1744915 other downstream 203568 19897060 ~ 19900019 (+) True LOC110495771
TU1744973 other downstream 299348 19992840 ~ 20010089 (+) False LOC110495777

Expression Profile