RNA id: TU1744791



Basic Information


Item Value
RNA id TU1744791
length 1299
RNA type TUCP
GC content 0.45
exon number 2
gene id LOC110495769
representative False

Chromosome Information


Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19748427 ~ 19761242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGCAGGTACTCTGCGTGTGTGGGGAATCTGAGACTCTGTCGTTGGTGCCTGACCTCCAGAGACTGAGTCGGTGAGGGTGGTGAAAGGGAAAGAGACTTCAGAGGACAGTgtcacagccacggcaggaccaggtgtcacccttgttgccagcagcactaTACAGTTACCTCCGTGATGGGACAAAACCATATCAGCCACACAAACAATTTGTAAAACCACAAACTCTTGCCAACAGAGTGTTGACGTTTCAAGAGAGATGCTTTCACGATTTCCCCTGGCTACATTATAATCCATCAGTAAAAGGAGTGTTGTGTTTTCAGTGTAGCCAAGGGTTTTCAAGCCAGCCATCTTTTGGCCAAAGAGCAGATGCTGCCTTCATTAGTGCAGGATTTAGGAACTGGAGAAAAGCTATTGAAAAATTCACAGCACATCAAAACTGCCAAACCCACCGCCACTGTGTAACTGTCGCAGCACACCAGCTAAATCCAATCAGTTCCCAGTTATCCAGCACATGGGGTAAACAGCAGAAATGACGAAAGCTACCTTGCACTGTATGAGAAAGCAACAACATGGATTGAATCACACTCAAGACGTTTTGCTGGCAAAGCAGTGGATCACTATATGGCAGAATTGTTGGATGGTGTGGAGGTTGTTTGGTGACCGTTTTTACCAGGAAAGTCTAAACGTCCTGCAAAAGTTGGAAAGAGCGCTTCTCACAGGGGAGTTAGATGAGTCTTTAGATCAGTACTCTGAGCTGAACATAGATTCTCTTTCAGTGCAGATCCCTCTCTTTTGCAACAAATACACCTGTAGCAGCAGAGGTCCTCAGAAGGCTTCCAGTGGAGGTGCAAGGGGTTGTTTGACCAAATGGAGGTGCTGATCAGAATTTTGTTTGTGGAGCCAATGTCTTCATGTGAGGCTGAGAGGAGTTTCAATGCACTCCGCATGTTAAAGACTTGGCTACGGGCTTGCGTGGGCCAAGAGAGACTGAACGCCGTAGTTATCTGTAAAGTAAATCATGACAGGCTGGATTGTCTTGAGGGAAAATATCTGCCAGCAATTTGTTGGATCCATTGAAACCTGCAAACATATGTTCAGTTATTTTGTTCAGTAGTGTGtatagcagtggttctcaaccttttTTGAATCCTTGTGCTAAATACTTTCATTACACTTTTTTATTTCACTGACCCCTTGCAATTACACCAGAGGGAACACTAGGGGACACACACACCTTGTTTATAGTATGATATTTGTTCTTTTGTATGGTAGTTTTCAGTTTTTAGTACATGACAGTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1744771 lncRNA upstream 119217 19630938 ~ 19631515 (+) True G1523783
TU1744753 lncRNA upstream 150442 19596636 ~ 19600290 (+) True G1523765
TU1744750 lncRNA upstream 156841 19593341 ~ 19593891 (+) True G1523763
TU1744733 lncRNA upstream 173636 19574198 ~ 19577096 (+) False G1523753
TU1744734 lncRNA upstream 173636 19574198 ~ 19577096 (+) True G1523753
TU1744871 lncRNA downstream 94181 19848199 ~ 19848792 (+) False G1523871
TU1744872 lncRNA downstream 94351 19848369 ~ 19848838 (+) True G1523871
TU1744895 lncRNA downstream 101708 19855726 ~ 19856055 (+) True G1523894
TU1744897 lncRNA downstream 104088 19858106 ~ 19858708 (+) True G1523896
TU1744924 lncRNA downstream 154882 19908900 ~ 19917765 (+) True LOC110495772
XM_036952223.1 mRNA upstream 5446 19694069 ~ 19745286 (+) False LOC110495767
XM_036952215.1 mRNA upstream 5446 19694070 ~ 19745286 (+) False LOC110495767
XM_036952217.1 mRNA upstream 5446 19694070 ~ 19745286 (+) False LOC110495767
XM_036952216.1 mRNA upstream 5446 19694071 ~ 19745286 (+) False LOC110495767
XM_036952218.1 mRNA upstream 5446 19694071 ~ 19745286 (+) False LOC110495767
XM_036952226.1 mRNA downstream 3136 19757154 ~ 19761242 (+) False LOC110495769
XM_036952227.1 mRNA downstream 3154 19757172 ~ 19761242 (+) False LOC110495769
XM_036951423.1 mRNA downstream 43338 19797356 ~ 19799564 (+) True LOC110497090
LOC118941120 mRNA downstream 50492 19804510 ~ 19807971 (+) True LOC118941120
LOC118941067 mRNA downstream 57984 19812002 ~ 19813005 (+) True LOC118941067
TU1744679 other upstream 243476 19506392 ~ 19507256 (+) True G1523703
TU1744614 other upstream 306423 19442045 ~ 19444309 (+) True LOC110495755
TU1744577 other upstream 372260 19377067 ~ 19378472 (+) True G1523614
TU1744498 other upstream 543498 19206232 ~ 19207234 (+) False otomp
TU1744499 other upstream 543498 19206232 ~ 19207234 (+) True otomp
TU1744790 other downstream 4297 19758315 ~ 19761020 (+) True LOC110495769
TU1744845 other downstream 21074 19775092 ~ 19827966 (+) True G1523847
TU1744915 other downstream 143042 19897060 ~ 19900019 (+) True LOC110495771
TU1744973 other downstream 238822 19992840 ~ 20010089 (+) False LOC110495777
TU1744968 other downstream 261930 20015948 ~ 20033645 (+) True LOC110495777

Expression Profile