RNA id: XM_021571183.2


Basic Information

Item Value
RNA id XM_021571183.2
length 5130
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110495768
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19762474 ~ 19793454 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagcagagcgcgTACCCCCACATATTAAATCAACCACGCCTGGCCTCGACTAGTCCGACGGCCATATTGAATGTCTTCACAAATCGCCTTACGGTGGATCTCAATTGCACGGTTTTCTCACTCATGTCCGTTCTAAACAGGCTTCACGAGCAAATTGGAGGTGACAAGAGTACATGAAATATATTCGTTTAGTTTACAGCGTGGATAACCTGAAAGCATTGAATTCTCCGAATTGTGTCGGTCTTTGAAGCTGTAGTTCTTCACCAGAGGTCCTGTGAAACAGGGAAGCTATCCGTCCTGTGAGTTGTCTTCTCAGCTGCCgggtgaagggaggagaggagacaaacaTGCCGAAACCGATTAATGTGCGGGTGACCACCATGGATGCAGAGCTGGAGTTTGCCATTCAGCCCAACACCACTGGCAAACAGCTCTTTGACCAGGTGGTGAAGACGGTGGGGCTTCGAGAGGTCTGGTTCTTCGGACTGCAGTACGTGGACAGCAAGGGTTACAGCACGTGGCTGAAGCTTAATAAAAAaGTGACAGCCCAGGATGTAAAGAAGGAGAACCCTCTGCAGTTTAAGTTCCGGGCCAAGTTCTTCCCCGAGGACGTGTCTGAGGAGCTGATCCAGGAGATCACACAGAGACTCTTCTTCCTGCAGGTGAAGGAGGCCATTTTGAACGATGAGAACTACTGTCCCCCGGAGACTGCCGTGCTGCTGGCATCCTACTCTGTCCAGGCCAAGTACGCCGACTACAACAAAGACAGCCACAAGCCTGGCTACCTCACCAATGACAGACTGCTGCCACAGAGAGTCCTGGAGCAGCACAAGCTCACCAAGGAGCAGTGGGAGGACCGGATTCAGACCTGGCATGAGGAGCACCGAGGCATGCTCAGAGAGGACACAATGATGGAGTACCTGAAGATAGCTCAGGACCTGGAGATGTACGGAGTCAACTACTTTGAGATCAAGAACAAGAAGGGGACAGAGCTGTGGCTGGGAGTGGACGCCCTGGGACTCAACATCTACGAACACGAAGACAAactgacACCAAAGATCGGCTTCCCTTGGAGCGAGATCCGAAACATCTCCTTCAACGACAAGAAGTTTGTCATCAAACCCATCGACAAGAAAGCTCCAGACTTTGTGTTCTACGCGCCGCGGTTGCGGATCAACAAGCGGATCCTGGCTCTGTGTATGGGGAACCACGAGCTGTACATGAGGAGGAGGAAGCCTGACACCATCGAGGTGCAGCAGATGAAGgcccaggccagagaggagaaACACCACAAACAGCAGGAGAGAGCCCAGCTGGAGAACGAGAAGAAGAAACGAGAGCAcgcagagaaagagaaggagagaatagaGCGAGAGAAGGATGAACTGATGGAGAGACTGAGACTGATCGAGGACCAGACGATGAGGGCCCAGAAAGGACTGTTCTCAGCACCAGAGTTGGAGGAGCAGACACGTAGGGCCCTGGAGCTGgagcaggagaggaagagagccAGGGAGGAGGcggagaggctggagagggagagacaggcagcGGAGGAGGCCAAGGCGGAGCTGGCCAGGCAGGCCGCTGACCAGATGAAGAACCAGGAACAACTGGCCGCTGAGCTGGGCGAGTTCACTGCCAAAATAGCCCTGCTGGAGGAAGCCAAGAGAAAAAAGGATGAGGAGGCCACTGAATGGCAGCAGAAGGCCATCTCAGCCCAGGACGACCTGGAGAAGACCAAGGAGGAGCTGAAGACGGTGATGACGATCTCGTCGACGCCAGCGGGCGGCTCCACTGAGAGCGAGCACGAGGAGCAGGACGAGAACCACGCAGAGGACGCCGCCGAGCTCTCCCTGGAGGGCGTGAGCGCCCTGGACCTGCGCAGCGAGGAGGAGCGCGTCACTGAGGCCCAGAAGAACGAGCGCCTCAAGAAACAGCTGCAGGTGTTGAGCTCAGAGCTGGCTGAAGCCATAGACGATACCATGAAGACCCAGAATGACATGCTTCATGCGGAGAACGTGAAGGCCGGGAGAGACAAGTACAAGACCCTACGTCAGATCCGCCTGGGCAACACCAAGCAGCGCATCGACGAGTTTGAGTCCATGTGATCTGGTCTGGGTTCCCCCATCCGTCCATTGGCGACTCGCTTTTCGTCAAAGCAACAGGCGCTGTCCCTCCTACACTCCCCCCTTTTCCCCGTACCCATAACCGCAAAGGTTCCAGAGGGCACGGCCGCCACCGCCTCAAACTTTGCCAAAGCTCTGCCCGCATCTCCATCAGGAATCGCCCAATCGGGCGCAAGCAACGCTTTGCACCGTTCTGAACATGCTATTCTCCTTATATTGCAAAGAATACGTCTGTGCTTTGCTTTCAAATATCTAATACGGAGACACAACAAAAACCAAAATGGCGAAGATTGGATTTTTAAGCGAACAAGGCCATCGGaagctttttttgttgtttttgccgGTAAGTTAGTATGCAATGCTTTAGTGTTACTGACTGTCTTCAGTTGAACGTATTGATGTTGTCTGGTACTTTCAAAACCGTTTTTGTTCTGATCTATGATTCTGACACGTTTTATTGAAACCCTGTTTCTTAAGTTCTCTGTGCTCATTGGTCCGAGGCTGGTAGAGAGGCTTGTGTTAGTTATGGGATCGATCCATTCAGTTATGTTGTGAACAATTTCAAAACATCAATTGTTTTAACAAATGAGCCTATGGGtaaacagggttgacgtgttatgccCGACCCACTCCGTCTCCTACcacaaaatggccaaaaagagtagaaccagctcacctgcttttacactatcatttgactattagatgttcaatttttcttttggagaaaaatatatttagaaaGGAATCTTTTCAACATATTAAAGTGAGAGTTCAGTtgtcgtaacagggttgacctttaAAATGAGAgaccaggttttttttttttttgtaaacttaaaatgaatcactaatcacatgaaataaagtCTTCAGAAATGTCTtcgtcaaagcaacaaaataactattgCTGAACAATGATGGTGAAAGCCTGGGGAAATGTTGATGTTAAGTGGGTTAAAGTCTTCCTGGAAGTCGGAGGCACGGAGAGAGAGGAATGCTGACTTTTGCCACTTTAGTaagtcttttaaaaaaaaatctgatttattgaattTACCGTGgagtctatattaaagggcacttcattgaAAAGAACAGTCTTTTTAAAATTCTATATTGATGCACCATTTCgtcttaaaatatcaaagggatgcgAAAAGGAAGTGGCTTTGGAACGGCCCTACTATCTAGACTGAGCATCAGTGCAAAGCCACTACACCAGTCTTGAGGAGAGGTGCGAGTCTTGATGAATAAGTTGTAGAATATAGCGAGATTTGATTTGGTGCTCAAGGATACATAATGTAGTAAAGCACATTTGGTCGGAGATAAGCTGATCGTATGATGAAGATAAGCTAATTGGTTAGGCGTGTGCGCGTAGGTAGGAAGAGAGTGAAAGCTGTTACTTTAGCTCCTGTGAGCTGACTCCTAGTGTTTCATGTCCAGTCACCATAGATGTTTTTTACTGTCTACCAGCTCACAAAGGCCCAGGAAAGATGGACAGAGATGCTTAAGTGCCGTGAGAGTGCCAGTACTTTTGAAGAGGTATACCATGGTCTTTCTGGCTGGAGAGCACATGAAAACGTCAGTCCTTGTCGGAGAAGAGATCTCTACCTCAATACTGTAACCACAGTGACTGACCCAATCAAACACTCAGTCTCAATCCCCTCCCACAGATTCTGAGTTATGACTGTGGCTTGGCTAGTTCAGACTAGGAGGCGATGTTGCTTTATTGGTTAACATTTCAACCAAAATAAGAATGCTATTTTTATGCCAGATGTACTTTCAAGCGGTGACTCATTCAAGTGTCACTAGTGGAGACAATTGATCAATTTTTTTACACGGTGGCCTCTTTGATACATCTACCTTTTTGTTTTGTGTTACTAAAGTTTCTCTGAACTACACCTAAATTATCCAGAAGATCAAAGGTCAAGCAATCCAGCACCGAGGACGCGGCTGTGAGTCTGTATTTTCTGTAGTGGACAGTTCTGATACTGTGCAGTAGTGAGGTTGAGGACATCAGTGACCCAGGCTGTGTAGACATGGTGTCTGTGTCCTGTGGTAGTGGAGCTGGTTTGACTGGTTATTGTTAAGAGCTGTTTGGACTCGGGACCTGCATCTGTCTGCTGACAGCCAACTGGGGCCAGAATAGGACAGTCATGTTTCTTCTCAGCTGCTGGACAGATCTGCTCACCGTTCTCTCTGCCACAGCTGTCAGCAGGATGGATGGAAACCCAATGGCAGAGTGCCACCAATttaggactgtgaagagacagacgGGTGCAGATGTCAGAGGTGAATGTGCCCCCCTATCTATTTGCTGTCATTAGTGGGACCCAACCTCTTGCCCCCTTTTTTTCAGACCTTGATCTTTTCTCACACAACCTTTTTACTCGATCCAACTCAAATTAACTCCAGTTTTGTGGATAAATGTTACTGATGCGTTTTGAATGAACCAGAGTGTTCAGTTTTTATTTGCAATCAGATGACGTGATTATTTGTTATGCTACACTAGATAGGTGGTTTAAGTTGAGATCTTTAAAGCCagagttttaataaaataaagcACTTGTTTGGATCCGGAGGACACTGAAGGGGCTTGACCCAAACCTGCCTTTTTGTTAACCCAGTGAGTGTCCAAATATAGGGGTTGTATTTGCCATAGCAGGTGAAAAAAAAACTGTGCTTCCAACTGTTATTTTTTGTAATGTGTTCCAAGATCAAACTATCTACCAGCATGCATCAGTAGCTCACTGGAGGTGAAAAGAGAACTACTCTACATGCCACCATCCCCCATATTGTTGAGTTGTGCTTTTCCCATTGGCTGAGCCTGTTAGCCTGCTTGTTTGACCTCCAATGAGAACCGTGTCAGTGATGCCTCTTTTGGAAACAGCGGTCATGTTTGCTGTTCAGTTTTTCCTTACGTTTATTAAACTAGTGTTTCTGTAAGATGGACACAGATGGACCTCAGTCCATTGGTTTCACAATAAAAGTTAAAAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745868 lncRNA downstream 17195 19742789 ~ 19745279 (-) True G1524769
TU1745839 lncRNA downstream 54320 19707684 ~ 19708154 (-) True G1524746
TU1745791 lncRNA downstream 93424 19667110 ~ 19669050 (-) True G1524702
TU1745767 lncRNA downstream 189945 19570743 ~ 19572529 (-) True G1524679
TU1745668 lncRNA downstream 364672 19397331 ~ 19397802 (-) True G1524598
TU1745891 lncRNA upstream 54915 19848369 ~ 19848839 (-) True G1524791
TU1745925 lncRNA upstream 57620 19851074 ~ 19851287 (-) True G1524820
TU1745928 lncRNA upstream 59906 19853360 ~ 19853658 (-) True G1524823
TU1745929 lncRNA upstream 60466 19853920 ~ 19854200 (-) True G1524824
TU1745936 lncRNA upstream 72198 19865652 ~ 19865916 (-) True G1524831
trnan-guu-14 mRNA downstream 85742 19676659 ~ 19676732 (-) True trnan-guu-14
XM_036952208.1 mRNA downstream 113723 19584834 ~ 19648751 (-) True LOC110497086
XM_036952207.1 mRNA downstream 113724 19584834 ~ 19648750 (-) False LOC110497086
XR_002469470.2 mRNA downstream 181240 19578492 ~ 19581234 (-) True LOC110495765
XM_021571180.2 mRNA downstream 185341 19574235 ~ 19577133 (-) False LOC110495764
XM_036951384.1 mRNA upstream 66750 19860204 ~ 19864234 (-) True LOC118941046
XM_021571193.2 mRNA upstream 166026 19959480 ~ 19967828 (-) True LOC110495773
LOC110497091 mRNA upstream 256986 20050440 ~ 20058151 (-) False LOC110497091
XM_021571204.2 mRNA upstream 319852 20113306 ~ 20140842 (-) True LOC110495778
XM_021571211.2 mRNA upstream 385147 20178601 ~ 20190522 (-) False LOC110495781
TU1745849 other downstream 32406 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 36943 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 185374 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 598348 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 1013079 18749125 ~ 18749395 (-) True G1524311
TU1746271 other upstream 777642 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2468602 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 3078591 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 3366104 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 3688086 23481540 ~ 23541256 (-) True LOC110495851

Expression Profile