RNA id: LOC110495770


Basic Information

Item Value
RNA id LOC110495770
length 3957
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC110495770
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19832923 ~ 19836879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACCATGCCAGGAAAACAAAGTGGGTCTACATTCTCTCAGCTGAGACTCGATCTTTGTTTCCTGATGTATTGCTGGGTTCTTGCTGATCCAGTATGTGGGTACTTCCTGAAAAACTGCACAATCCGGGGTAATCTCAGTGACCCCTCTAACATGAAAGTACTCTGTTATAACAGGAATCTTGAAGTCATACCTTTAGATATTCCGCGGAAAGTAAGCAATTTAGACTTGGCCATGAATAAGATTTCCAAGATCGAAAAGTTGGATTTTACAGACCTATCAAACCTCAAAATTCTAAACATGTCCAAAAACCAGATCTCTCAAGTGGATGATGAGGCTCTTGGACACCTAGATGCTCTTCAGGAGCTGGGTCTGTCTCATAACAGACTCACAACCCTGTCAGACCATTTGTTTCAGGGCCTGGCCAACCTCTCCCTGCTACATCTGGACAACAACCTCATTGCAACCATCAGCTCCTCATCATTTCAGCCTCTCTCCAGTTTGAAGACAGTGAATTTAACCAAGAACAACCTTTATAATATGAAGGAAGTTCAGGCCATTGTACAATTACCACACTTACAGGAGTTGTACATTGGGAGCAACATATTCACATCTTTCCAGTCACAGGAAATATCAAACACTTCTTTAAAGCTGAGAGTGTTGGATTTATCCTGGAATCCATTGGAAATCTTCAGAGTCACGGCAGATGTTTTTCCTTACCTTGAGGTGTTAGACATCGCCTACTGTGGCCAACTTGGACGCATGGAATGGGATGTGCTGAACAGGTCTTTTCTGAGCAACGTCAAACGTCTCAACTTGAGTGGCATTGAGATGTCTTTCGAGAGGATGGGTATGGTACTGCAGACTGTCAACTCCTCATTAGTCCATCTGAGATTGCAAGACCTTGTAAACGGCTCAAGGCTAAAGGTCAAGGCTCTCACTGATATTGCCTGCCATATACCTACACTCAATGTGCTAAGACTAGAATATAACAACATAGGTAATCTCTCTGAGGAATTTGTGCAGTCATGTAAGCACATGATAGAAGTGGACATATCAAATACTAATCTTTTTCAGCTGTCTGACTTTTCATTCAGACCGTTAGAGCAGATAAGGACTTTGAAAATGGGCCACAACAGGCTTTCTTCCGTGCCAAAGGCCACAAGAGATGTACCTACACTGAAGGTCTTGGATCTCAGCTTCAATATCATCAATAAACTGGGCTGCTCAGATTTCTCCAATCTTACAGGACTCACACAACTCATTATTTTCCACAATCAAATCTCCAACCTTCCAGGATGTGTTTTCCAGGATTTGAAAGAATTAAGGATCCTTAAACTGGGATCAAACAAAATCCTGACCTTGAATGAAGCCTTCATGAATGGTTTGCACAAACTTGAGACTTTGTTGATGGCAGGCAATAAACTGAGCTCTATAAGAAAAGGAGAGTTTAAAAGCTTAGTATCACTCaagaatttgtttttatttgACAATCAGATTGCCAGTATGGAAGATGGAGCCTTTGAGGGATTGGTCAACCTTACAGAACTTCAACTGGACTCAAATAAGATCACTCAAACAGACATAAGAAATACTGTGCTCACGGGACTTCCACTCTTAAGAACTCTTGATATATCCTGTAATTACATCACATATGTAAATGATGATAAATTAgaccctccacccttctctcatcTGATATCTCTGGAGAACCTCAGGATATTTAGTCAGCGTCACAAGGGACTGTCTCATCTACCTATCAACTTTCTTGAAGGACTGAAATCTTTATTGTCATTCCAGGCAGGGAGTCTCAATATTAAGGACCTGCACCCAAATACATTTATTCACACACCCCGGTTGTGGTTCCTTGATGTCAGTAAGAATGAGTTCACAGCCCTCACTCCAAAGCTGTTTCACCCAACCCCAAGGCTCAACAGCCTGTACCTGTCCAAAGCCCGACTTCAGTCCTTAGATTTCCTCATAGGAGCAAACCTCAGTAGAGTCACTTTCTTGCAGGTGAGCAAGAATGACATAACAGTAGTCAATGAGACAGTGTTGCAGTCTCTCCCTGCCTTGACATACCTGGACATGCAAGATAATGCTTTCACCTGTGGCTGCAGTGATGCTTGGTTTGTCCAGTGGATGGAGAGCAACAACCAAACACAAGTTGTTGGTGCAGGAGAATTTACCTGCAACTATCCTGCCGATCTAAAGGACACCAAGCTGTTGGATGTTGAGCTTCAGTTCTGTAGAGTGGACTTAGGACTTTACTGCTACATCTCTACCACTTGTCTGGTCCTCCTCACCCTGGTAGCATCCTTTGCCTACCACTTCCTGAAATGGCAGGTCATTTACGGCTATTACCTCTTCCTGGCTTTCCTCTATGACACTAAGCAAAGGAAAAAGCACACGCCTCATGGCTGTCAGTACGATGCCTTCATTTCCTACAATGCCCACGATGAGCCCTGGGTCCTGAGGGAGCTTCTGCCAGAGCTGGAGGGACAGCAGGGCTGGAAGCTGTGTCTCCACCACCGGGACTTCCAGCCAGGCAAACCCATCATAGACAACATTATGGACGGCATCTACGGAAGCCGCAAGACCATCTGTGTCATCAGCCACCGCTACCTGGAGAGTGAGTGGTGCTCCCGGGAGATCCAGGTGGCCAGCTTCCGGCTCTTTGATGAGCAGAAGGACGTCCTGATTCTGGTGTTCCTAGAGGAGATCCCTACCCACCAGCTGTCACCCTACCACCGGATGAGGAAGCTAGTGAAGAGACGCACGTACTTGAGCTGGCCCAGGAATGGGGAGCACATTGTGCTCTTCTGGCAGCAACTACGGCTGGCTTTAGAGACCAAGGACGGCCCTGCTGAGGAAAATCCCATCCTCTCTGGTGTGCAGGCTCTGTGATAGTGACACGTTGATAGTGACACCTCACTCTGAACCTTTTCTGTATATTTACATGAGAATATTGAAGATGCACTCTCACACTTTTGtctaatttcagccagtagttttgaaagtggtgctcacGAGCCAGAAGTGGTCCCAGTTTTCTGTGTATCACGTCACCTAAAGTGTTTTTTGCCTATTAGTATTATATGTCATGAATTAATTTCatactatacagtatgttatgatTTTATTGTGCTTATCATCATGGAGTGCATCTTTAAGAAGTTCCTAAGAGTATTGATGTGCCCATgggtcaatctaagtaacatatgaaaaaaatccccatcaaagttagtttaagctagagatatcagtttcTTTGCATGGGTCTCAGAGCAATTTATATTATTCTGTACATTTATCTTCAAGGCCAAATGTAGTTTGATATGTTATGTTTTTTATGGTATTTTTTATGGTATTAATGCAAAACTTAGCTAATAAGCTAAGTAGTTACAAAGCAGCAAAAAGTTAGTAAGTAGTTGAACAGTTCCTCACTAGccaaaatgctaaagttgtccgtgatgagattcgatCTCGCAACCATATGCCCACCCATCTGTCATATGCAACTATGCCAAAACTAACATACCATACTAAATGGACTGTTTCGGATTTTcagtgcatttagaaagtaatcagaccacttgacttttcccacatttcgttacgttacagccttattctaaaatgtattaaattactaaaaaatcATCATACATCTACACACTATactccatgatgacaaagcaaaatgtgtttttttttacattgtagctagtttaataaaatgtttcaacagaaataccttttacataagtattcagaccctttgctatgagactcgaaattgagctcaggtgcatcctgtttcaattgattcttgagatgtttctacaacttaactGGAGTCTATATGTGGTAAactgaattgattggacatgattaaaaaagcacacacctgtctacataaggtccgacagttgacagtgcatgtcagcgcaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744771 lncRNA upstream 201408 19630938 ~ 19631515 (+) True G1523783
TU1744753 lncRNA upstream 232633 19596636 ~ 19600290 (+) True G1523765
TU1744750 lncRNA upstream 239032 19593341 ~ 19593891 (+) True G1523763
TU1744733 lncRNA upstream 255827 19574198 ~ 19577096 (+) False G1523753
TU1744871 lncRNA downstream 11320 19848199 ~ 19848792 (+) False G1523871
TU1744872 lncRNA downstream 11490 19848369 ~ 19848838 (+) True G1523871
TU1744895 lncRNA downstream 18847 19855726 ~ 19856055 (+) True G1523894
TU1744897 lncRNA downstream 21227 19858106 ~ 19858708 (+) True G1523896
TU1744924 lncRNA downstream 72021 19908900 ~ 19917765 (+) True LOC110495772
LOC118941119 mRNA upstream 12817 19816649 ~ 19820106 (+) True LOC118941119
LOC118941067 mRNA upstream 19918 19812002 ~ 19813005 (+) True LOC118941067
LOC118941120 mRNA upstream 24952 19804510 ~ 19807971 (+) True LOC118941120
XM_036951423.1 mRNA upstream 33359 19797356 ~ 19799564 (+) True LOC110497090
XM_036952226.1 mRNA upstream 71681 19757154 ~ 19761242 (+) False LOC110495769
NM_001124412.1 mRNA downstream 7457 19844336 ~ 19847844 (+) True tlr22
XM_021571189.2 mRNA downstream 60151 19897030 ~ 19900020 (+) False LOC110495771
XM_021571192.2 mRNA downstream 71724 19908603 ~ 19954099 (+) False LOC110495772
XM_021571190.2 mRNA downstream 71727 19908606 ~ 19954099 (+) False LOC110495772
XM_036952228.1 mRNA downstream 72144 19909023 ~ 19954099 (+) False LOC110495772
TU1744845 other upstream 4957 19775092 ~ 19827966 (+) True G1523847
TU1744790 other upstream 71903 19758315 ~ 19761020 (+) True LOC110495769
TU1744791 other upstream 78905 19750732 ~ 19754018 (+) False LOC110495769
TU1744679 other upstream 325667 19506392 ~ 19507256 (+) True G1523703
TU1744614 other upstream 388614 19442045 ~ 19444309 (+) True LOC110495755
TU1744915 other downstream 60181 19897060 ~ 19900019 (+) True LOC110495771
TU1744973 other downstream 155961 19992840 ~ 20010089 (+) False LOC110495777
TU1744968 other downstream 179069 20015948 ~ 20033645 (+) True LOC110495777
TU1744971 other downstream 229375 20066254 ~ 20076312 (+) True LOC110495776
TU1745087 other downstream 369613 20206492 ~ 20235180 (+) False LOC110495784

Expression Profile