RNA id: XM_036951384.1


Basic Information

Item Value
RNA id XM_036951384.1
length 4031
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC118941046
representative True

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19860204 ~ 19864234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCTGAAGATTAAAACATACCAGACCAACAAAAAGATTCTCCAACTTTTCCTCCATGATGATAATGAGTTCTCACTCCGAGAGAAAAGCCTCCTTCCCTGGTCTCTCAGTCCTGATGTCACCCACCGCCCTGTCACCCACCTCCCCCATACAGCGAGACCTAAACTCCCCCAGGGGGTCCATCTTCGCACCCCTATCCCTTACCGATCCACCCAGCTGGGTGATGCTGGCCCTCTGCAATGTAGAGCAGGGCGAGAAAGAGCTGCAGAGCCTTAGAAAACGACAGACGAGTGAGGTGGAGGAAATGAACCGAGAGCTTGACAACGCCATCATTGAGGCTCAGAGACAAGAGCGCCGACTGCTGGAAAAAGTTGAGCAGGACCACCGAGAAGCCCAGCGGCACCTGGAGCAGGTGAAGAGGGAGAACGCTGCGGCAGTGCGGGTTGGACAGTCCCTGGTGGACCGGCAGCTCCGCAAACTGGGCCAACTGAAGGAGCAGGTCCAGAGATGGGGTGGAAGCAGTGGGGGACCCAATAAGAACCAGCTTCAGAGGGGTGTGGCAGAAGTTACACAGCCTTGGGAAATCTCCCTCTCCTTAAAGAGGGTCACTTTTCAGCCCGGTACGCAGCTGAAGGACGTTAGGTTAGGGGAGGTACAAGTCCAGGATCAAAATCTGAACTACCCTATTGGTGTCTGCGGTGAAACAGGGAAGAAATGTGCTCTTCACTCAGGGGAGATGAAGTTTGGAGACCGTGGATCATTTGAAGTTCGGAAGGACCTTTCATCCACATCAAATAGTGGGAGCATGCGTGTAGTCAGGAAGCTCCGCCTGTCCACCACAGACAAGGATGAGCCAAAGTCACCAGTCTCAAAGCCACCGCTCAGTCCCCGGCATCGAGGAGCATCTGAGTCATCCATGGATGAGGAGCTAGACACACATGGCCAGGACCTTTTCCTGGCTATCCCTCCAATCTCCAGCCAAGGGGAGTCGGAGGTAGAcgaaccagaatgtggacaaaCTGGAATCAAGAAAAGCTCCATCCTCAAGTGTCAGAGAAAGCAAAGGACCCTGGTTCTCATCCCCAGCGAGGAACCCTCCTGCCCTCCAGAAGGCGTCAGATCTGAACATAGTGACCAACCACAGACCTCTCCCAAGACCAGCCGTGGAGAACCCCATCCCAGGTACAGCCTCCTGGACCTATCTTCAAGATGCGCACGCTCACGTCAAAGCCTGTCACCCAGCAAATCCCCCCGTGGAACATCCACTAATGGGGGGAGTCCCCCATCCCCGGCTGGCAGTGAGGACTGCTACAACTACATCACCATCCCCTCTCCTAGTAACAATGTCTCCCTGAACCAGGAACACCGACGCGCCATGTCGATGGCGGACCTCTCCAGGAAGACCCGTCCTTTGATCAATGGGGGAAAGGGTGCTCACCTGGGATTTAAGAGAGACAACCACTCCTGTCTATCATCTGCCTCCTCAACCCTGGAGCAAGGGAATGGATCTGAGTCTGGCGGCAGAAGCCCCACAAGCTCGGATGAAAGAGAATCAAGATACCAGGGAAGGAGTGTAGGTTCTAACTGTGTGAGTCGATCTCTGTCCATGTCGGCTATTGACAACGAAAGCCACCCTACAGCCAAGGAGAAACAATCAGACAATAGAAGGAGAGACAAACCAGAGCCAATCCTGAGAGACCTGGAGGAGGAAGCAGGTTCAAGTGCCTTTGAGTCAGCAAATCTGATCAAGCAGTTTGGAAAGCAGGGCTCAGGGCGCTCCGACTTCAACCTGCCCAGCGGGCTCCACGCCACTGTCAAAGGGCAGCTTTTTGTGGTGGACTGTGGAAACGCCCGAATTCAGGTGACCGACCTTCAGAAGTATGTTGTGCAGCAGGTGTCCCCTACTGGAACTGAGAGATCTGCCCGCATCTGCAACTACTTTGATGTGGCTGTGAACAACAAGGGCCTCATTGCGCTGACCTGTGCTGCAGAGCGTGCCGTGTTGGTGTTCAGCCGTCATGGACGCCTCCTCCAGACCTTCGGGGGTAACATGATAGGATCCACCCATGAAGAGCTAGATGCACCAAGGGGAGTGACCGTCACCCGTCTGGATGAGTTCCTGGTGGCCGACATCAAGCGTGGAACTCTAACTGCCCTGATGCTGGACCCCAAGACAGGCGCCAGGCTGGAGCGCACCATAATCACAGGATTCCACAGGCCCTACCTGGTGGCTGCCTGCCTGACCTCTGGGCTGATGGCTGTGTCTGAGCGGGGCAATGAGACTGGCTGTGCGCCTTGCATCCGAGTGCTGGAACCTGGCTGGAACACCATCCGTGTCCTGGGGTTGTGCTCCGGCATGGGGCCTGTCCTGGCCTGCCCCTGGGGCCTCAGCATCGATAGTGATGGGGATGTCTTGGTGGCAGACTGGGGCAGGTTGCACCGCGTCCTGCTGTACCCTGCCAAGGGCCTAGGCTGGCCCCTTGTTACCCAGGGTCTGAGCAGCCCCCGAGGCCTGGCCCTGCTGCCAGAGGGCCAGTTAGTGGTGTCAGACAGCATGAACCACTGTATTAAGATCTACCAATACAAGTGAGACACTGGCGGGGTGAAGCTGTCAAGATGAGGGTGGAAAGATGAAGATGGTGAAGAAGTAGGCATTCTCTAGTCAACACCGATGCAGATTTCAGTAAATAACAACTACTTTGGCATAATCCTAGAGGATCCTGTTGAGAAGTTCATGTTCTTCTAGAAAAAAAGTGAATCATAAGTCACAATGTAGGGTACAAATTGCAAAAGAAGACAGACTGTATAGAGTTGTGGAGAACAGTAGAGAAGATTACATCTTTATTACCGCAGAGGACAATTTCATTTGCAGCAAACGTTTTAGCTTGTTTTTAATTTGCCCATTGTCTTAAATGTGATAATCATAGTTTGATAATGAACCAAATGAAAATGGTGAAGAATAGCTGTATATAGCAAAAATATATTTAGCAGAAGCATAGTTGTATTTTAATAGCTACTACAGTGTAGAGCAGCAGTGAATTATTTACACCATATAACACAAAATTAAGGGTCCGTGCTGTCCGGAacccttgggacatccctaccccaTAAATGTTTAAGGTAACgattaaggtcagggttaggtaagggttatggttaaggttaaggttaggtctaGGGTAAGGGTAGAGGTTAAGGAtaagcttagggttagggtttagagtAGGGATGTCCCAAGAATCCCGGATAGCACTGATCCAAAACTAAGGGTGGAACTTTGTATCTGTTATTAGACTTCTAGGTATTTCAATGAAAATTCAAGAGACATTTTAAATGGCTTGCTGTTGTTATGAGTAGTTGATTACTCACAAAATAAACTAACTGTTCGCAAAATTGGCCATTTTATATAATGTGTAACAACAGGGTATGTGATGTTGCTGTAATTTCACCTCtgcccttacaaaaaaagattgccgttttgaaactgcagtaaagtGCAGTAACTGCCGTCGGTTGTGAtattttggacgcagtaattGCAAGATTACTGCAGTAAAAAGAAAATTGTATTTTGGAcacagtatttgcagcatactggggttatactgcactctaacgaCATTTATactacagtgtactgcagttactGTACACTGCAGTCTGACTGCACATTTGTTTCATAAGGTTGAAGTCTGAAAGCTTTTGAAATGCTGTCTATCCCCAGTAGTTATGTTGTGAAACACAGTAATGTGTAATAGCCTACGCTATGGTAATGACTTGGAATTGAATACATTTATCATGAGACTGCCACCTCAAATATACTGTGGATTTAATCACATTTTATGTGTATTGATTGTCAATTACATTGTAAATATTTAATTAAACTTTGGATTGGGTTTAAATCTTTATTGCAATGCACTCGTTCTTTATTTTGACTTGTTTCTTAGAAATCCAGTGTCTAAAGTTTCAAATGATAGAACAAAGATAAGCAAGGGTCCTTCTCTCACAGACTGTTGTTTATCTCCCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1745929 lncRNA downstream 6004 19853920 ~ 19854200 (-) True G1524824
TU1745928 lncRNA downstream 6546 19853360 ~ 19853658 (-) True G1524823
TU1745925 lncRNA downstream 8917 19851074 ~ 19851287 (-) True G1524820
TU1745891 lncRNA downstream 11365 19848369 ~ 19848839 (-) True G1524791
TU1745868 lncRNA downstream 114925 19742789 ~ 19745279 (-) True G1524769
TU1745936 lncRNA upstream 1418 19865652 ~ 19865916 (-) True G1524831
TU1745949 lncRNA upstream 16380 19880614 ~ 19880863 (-) True G1524838
TU1745976 lncRNA upstream 53141 19917375 ~ 19917756 (-) True G1524860
TU1746009 lncRNA upstream 108901 19973135 ~ 19974915 (-) True G1524893
TU1746016 lncRNA upstream 119409 19983643 ~ 19984222 (-) True G1524900
XM_021571183.2 mRNA downstream 66750 19762474 ~ 19793454 (-) False LOC110495768
XM_021571184.2 mRNA downstream 66750 19762474 ~ 19793454 (-) True LOC110495768
XM_021571185.2 mRNA downstream 87726 19762474 ~ 19772478 (-) False LOC110495768
trnan-guu-14 mRNA downstream 183472 19676659 ~ 19676732 (-) True trnan-guu-14
XM_036952208.1 mRNA downstream 211453 19584834 ~ 19648751 (-) True LOC110497086
XM_021571193.2 mRNA upstream 95246 19959480 ~ 19967828 (-) True LOC110495773
LOC110497091 mRNA upstream 186206 20050440 ~ 20058151 (-) False LOC110497091
XM_021571204.2 mRNA upstream 249072 20113306 ~ 20140842 (-) True LOC110495778
XM_021571211.2 mRNA upstream 314367 20178601 ~ 20190522 (-) False LOC110495781
XM_021571209.2 mRNA upstream 314367 20178601 ~ 20190856 (-) False LOC110495781
TU1745849 other downstream 130136 19722745 ~ 19730068 (-) False G1524755
TU1745850 other downstream 134673 19723434 ~ 19725531 (-) True G1524755
TU1745684 other downstream 283104 19573628 ~ 19577100 (-) True LOC110495764
TU1745534 other downstream 696078 19143985 ~ 19164126 (-) True G1524473
TU1745358 other downstream 1110809 18749125 ~ 18749395 (-) True G1524311
TU1746271 other upstream 706862 20571096 ~ 20571867 (-) True LOC110497093
TU1748552 other upstream 2397822 22262056 ~ 22262462 (-) True G1527230
TU1749447 other upstream 3007811 22872045 ~ 22885833 (-) True G1528018
TU1750411 other upstream 3295324 23159558 ~ 23168591 (-) True LOC110495841
TU1750687 other upstream 3617306 23481540 ~ 23541256 (-) True LOC110495851

Expression Profile