RNA id: XM_021571189.2


Basic Information

Item Value
RNA id XM_021571189.2
length 2250
RNA type mRNA
GC content 0.39
exon number 2
gene id LOC110495771
representative False

Chromosome Information

Item Value
chromosome id NC_048582.1
NCBI id CM023236.2
chromosome length 74657750
location 19897030 ~ 19900020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCCGTTTCTCAAGTAAGCCTTTATTAGTTGGGATCGTTTGGATCTTATCTCTCATATAAGCCGCGTGCTGGACCCGAGAACGTTCGGAAAACACAGAAGTGGAAAGGAAGGGATTATCTTTCGGCTTTTCAATGCACTGACTGTTGGCACACGGTGCACAAGGGCCTTTCTTATCACGGTCATCTCCATCAAGAAGAACGGACAAATATCTGCACTTTCAGCGAGATCTTATCGACACAACAATCTATTGTTTCCAGCTGGGTGTTCACAAGGCACAAGATTTTTATCTTCAGAAATATTTACCACATAATCGTTAACTATACTATCAACTATACCATCATCTTCCCAACGAAGTGATATACCACAACTTGAAATTAGATGGTTCTGAGATAAACAACATTTTATGTTTGATTCGACTGTTAAAAATCTCAAAAAGTAAAAAGCAATTAATTGCATAAGGCTGTCAACAGTAGGCTATAATTCCTGTCATGAATTGGACTAAATAAGATGGTTTGTGAAAAaaaacaaagggaagcacagagtTAATTTGGAGTTGGAGTTTACTCCAACAGCTATCAAGAATCATCAGACAGTTGTGTCTCTCAACTGTTTGTCAAGctcttttTGGATACGAACTGAAAAACATATGAAAAGACTGAAAATGATGCTGAGTCCAGACCAAGCTGATTCCGACCTCGGATGGGGACAATCCGACGCAGAGTCGGTGCTCAACGACCTCAAGGTCGGGTGCCTGTCCGACGAACcgatggagggggaggggaagacgAGGTCGCTGGCCCAACCGACCCTCagcagggaggagaagagacggAGGAGACGTGCGACGGCCAAGTACCGCTCGGCCCACGCCACGCGCGAGAGGATCCGCGTGGAAGCGTTCAATGTGGCCTTCGCTGAACTGAGAAAGTTGCTGCCAACCCTTCCCCCTGACAAGAAACTCTCCAAGATCGAGATCCTCAGACTTGCAATATGCTATATCTCCTATCTCAATCACGTTCTGGATGTCTAGTTGAAATTAGTGAGTTACATTTTCAAATGGGAGAATTGGACAAGGAGAATGGAGGGACCAGAAAGAAATATGGGTGACATGTCACTTATGAAATCGGGGATACATGAAAGTTGCCAGAAAGTACaaaaaaagagaggggaggaagggggggggggggggggggggagtctgcagcctacagcctacttaTCCATGATTTTGAAGAAAATGCCTGTTTGATATTGCGTTTTGGTGAGGCTGGGTAACCCAGATGAACGAAAGGATGGATGTAAACGGAATGATATAGCTGCTTTATAGACATAGCATAGTTGATGTTTCCATAAAGGAGAACAAGTTCAAATGCATTAATGCATTAGTGCCACTTATGACGCGTACAATTGTGACCTTCATCATTGTTATTTAAGTTTAtggaattatttatttaaatgtgttaatattGAAGGTTCTCTTATTTATGTTTATAATAGACAAACGTATTTTATATACATGTCCATTGTTTGTATCATTGTATACATGTATATTTTAGGCTGTGATGATGAACTTCGAAAATGATGTTGTTGCTCTTCAAATGGCACTTTCTGTTTTTGTATTATacggtttttattttattgaattaGTACGTTAAGTGTAATATACTTTTATTCATGTCATGTCTATTGTCTATCAGGCAACGATAAGCACTTAATCATGTTGGGTTAAGTAAACTCATAAAACGTCAAACTTCGTTTAGTTCCCTTAAGTGTAAAGGGGAAGGAAGTTAATCAAAACTGAACAATACACCGAAAACGAATTAGCCTACTAaagaaaaacatccacacaatTTGAATTCGACTAACCGGATATAAAAAGCAAAAATCTAATTGAATGACATCGTTTGTGTTGATATCACTTTACAATTCAGAGGCAAACCTCTTTTGCTGTGACCAAAAAATCATTTCAAAATATTCTGATTTctattaaatgtttttatttcctTAAAAGCTAGAGGtgtttatttatatatctgtCTCTGCTTTGTATCTCAAAAAACATAATAAGTAATTTTATAGCGAAGAAAAACATATCTTCTATCCAAAGATTTTTTGTCTCTTCAGGGTTGTGTACTTGTTGCTTTATGCAGATATTTTGTAGTAGAGTTATTGTGACAGCTGGTTTTTAAGGAAcgcattttttatattttccggTGGTGTTTTTTGATTAAAAAAGGGAAAGAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1744897 lncRNA upstream 38322 19858106 ~ 19858708 (+) True G1523896
TU1744895 lncRNA upstream 40975 19855726 ~ 19856055 (+) True G1523894
TU1744872 lncRNA upstream 48192 19848369 ~ 19848838 (+) True G1523871
TU1744871 lncRNA upstream 48238 19848199 ~ 19848792 (+) False G1523871
TU1744771 lncRNA upstream 265515 19630938 ~ 19631515 (+) True G1523783
TU1744924 lncRNA downstream 8880 19908900 ~ 19917765 (+) True LOC110495772
TU1744961 lncRNA downstream 83205 19983225 ~ 19983481 (+) True G1523959
TU1744964 lncRNA downstream 85702 19985722 ~ 19986153 (+) True G1523962
TU1744996 lncRNA downstream 149882 20049902 ~ 20104851 (+) True G1523994
TU1745000 lncRNA downstream 152749 20052769 ~ 20118213 (+) True G1523997
NM_001124412.1 mRNA upstream 49186 19844336 ~ 19847844 (+) True tlr22
LOC110495770 mRNA upstream 60151 19832923 ~ 19836879 (+) True LOC110495770
LOC118941119 mRNA upstream 76924 19816649 ~ 19820106 (+) True LOC118941119
LOC118941067 mRNA upstream 84025 19812002 ~ 19813005 (+) True LOC118941067
LOC118941120 mRNA upstream 89059 19804510 ~ 19807971 (+) True LOC118941120
XM_021571192.2 mRNA downstream 8583 19908603 ~ 19954099 (+) False LOC110495772
XM_021571190.2 mRNA downstream 8586 19908606 ~ 19954099 (+) False LOC110495772
XM_036952228.1 mRNA downstream 9003 19909023 ~ 19954099 (+) False LOC110495772
XM_021571191.2 mRNA downstream 12465 19912485 ~ 19954099 (+) False LOC110495772
XM_021571195.2 mRNA downstream 69488 19969508 ~ 19975011 (+) True poglut1
TU1744845 other upstream 69064 19775092 ~ 19827966 (+) True G1523847
TU1744790 other upstream 136010 19758315 ~ 19761020 (+) True LOC110495769
TU1744791 other upstream 143012 19750732 ~ 19754018 (+) False LOC110495769
TU1744679 other upstream 389774 19506392 ~ 19507256 (+) True G1523703
TU1744614 other upstream 452721 19442045 ~ 19444309 (+) True LOC110495755
TU1744973 other downstream 92820 19992840 ~ 20010089 (+) False LOC110495777
TU1744968 other downstream 115928 20015948 ~ 20033645 (+) True LOC110495777
TU1744971 other downstream 166234 20066254 ~ 20076312 (+) True LOC110495776
TU1745087 other downstream 306472 20206492 ~ 20235180 (+) False LOC110495784
TU1745162 other downstream 405685 20305705 ~ 20306904 (+) True G1524124

Expression Profile